BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489645
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28220.1 | Symbols: | Protein prenylyltransferase superfami... 1537 0.0
AT3G04830.1 | Symbols: | Protein prenylyltransferase superfami... 869 0.0
> AT5G28220.1 | Symbols: | Protein prenylyltransferase superfamily
protein | chr5:10190357-10193119 REVERSE LENGTH=1285
Length=1285
Score = 1537 bits (832), Expect = 0.0
Identities = 995/1071 (93%), Gaps = 22/1071 (2%)
Strand=Plus/Plus
Query 1 GGTACAGTAATAAACCGAACCAG-TCCGATGTTTGTTTTCTTCGTCGTCGTTCCATCAAC 59
|||||||| |||||||||||| | ||| | |||| ||||||||||||||| |||||
Sbjct 1 GGTACAGTCATAAACCGAACCGGCTCC-A----TGTTCTCTTCGTCGTCGTTCAATCAAA 55
Query 60 CAGATCCACATTGCTCGTAAG-TCGTAGTAAGTAGAAGCAAAATCAGA-AGAGATGGTGA 117
|||||||||| |||||||||| || || || | | ||| | | || |||||||||||
Sbjct 56 CAGATCCACAATGCTCGTAAGTTC-AAGCAA-AATCA-CAAGAGC-GAGAGAGATGGTGA 111
Query 118 CGAAAACAGAGGAGACGCAATTGAACCAGCTCGAGATTCAAGTCGATAATGGCGGAGGTG 177
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 112 CGAAAACAGAGGAGAAGCAATTGAACCAGCTAGAGATTCAAGTCGATAATGGCGGAGGCG 171
Query 178 GAGCTTGGGAGTATCTTTGTCTCGTTCGTAATCTCAAAATTCGCCGGTCGGAGAAAGTGT 237
|| | |||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 172 GAACATGGGAGTATCTTTGCCTCGTTCGTAATCTCAAAGTTCGCCGGTCGGAGAAAGTGT 231
Query 238 TAAAACACGGTTCCTCGATTTTGAATGATCCAAGAA-AAA-GATCTGCTCTTGGTCCAGA 295
||||||||||||||||||||||||||||| | |||| ||| |||||||||||||||||||
Sbjct 232 TAAAACACGGTTCCTCGATTTTGAATGAT-C-AGAAGAAACGATCTGCTCTTGGTCCAGA 289
Query 296 TGAATGGACCCTAAATGAGCAAGTGGCAATTGCAGCTATGGACTGTCAATGTCTCGGTGT 355
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 290 TGAATGGACACTAAATGAGCAGGTGGCAATTGCAGCTATGGACTGTCAATGTCTCGGTGT 349
Query 356 TGCACAGAATTGCATTAAGGCTTTGCAGA-AGAAATTTCCTGGGAGCAAAAGGGTTGGGA 414
||||||| |||||||||||||||||||| | |||||||||||||||||||| |||||||
Sbjct 350 CGCACAGAGTTGCATTAAGGCTTTGCAGACA-AAATTTCCTGGGAGCAAAAGAGTTGGGA 408
Query 415 GGCTTGAGGCGTTACTTCTTGAAGCCAAGGGATTATGGGGAGAGGCTGAGGAAGCATATT 474
|||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 409 GGCTTGAGGCATTGCTTCTTGAAGCGAAGGGATTATGGGGAGAGGCTGAGGAAGCATATG 468
Query 475 CGAGTCTTTTGGAGGATAATCCACTCGACCAAGCGATACACAAACGAAGAGTGGCTATAT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 CGAGTCTTTTGGAGGATAATCCACTCGACCAAGCGATACACAAACGAAGAGTGGCTATAT 528
Query 535 CCAAGGCACTAGGCAAACCTTCCATAGCCATTGAGCTTCTTACCAAATATCTTGAACTAT 594
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 529 CCAAGGCACTAGGCAAACCTTCCATAGCCATTGAGCTTCTTAACAAATATCTTGAACTAT 588
Query 595 TCATGGCTGATCATGATGCATGGAGAGAGCTTGCAGAACTTTATCTTTCTTTGCAAATGT 654
|||||||||||||||||||||||||||| || ||||| ||||| ||||| ||||||||||
Sbjct 589 TCATGGCTGATCATGATGCATGGAGAGAACTCGCAGAGCTTTACCTTTCCTTGCAAATGT 648
Query 655 ACAAACAAGCAGCTTTCTGCTACGAAGAGCTCATACTATCTCAGCCTACTGTTCCATTGT 714
| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 649 ATAAGCAAGCAGCTTTCTGCTATGAAGAGCTCATACTATCTCAGCCTACTGTTCCATTGT 708
Query 715 ACCACCTCGCATATGCTGACGTTCTCTATACAATCGGCGGAGTAGAAAACATTATCTCAG 774
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 709 ACCACCTCGCATATGCTGAGGTTCTCTATACAATCGGTGGAGTAGAAAACATTATCTCAG 768
Query 775 CAAGAAAATACTATGCAGCAACCATAGATTTAACAGGCGGCAAAAACACCAGAGCTCTTC 834
||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||
Sbjct 769 CAAGAAAATACTATGCAGCGACCGTAGATTTAACAGGCGGCAAAAACACTAGAGCTCTTC 828
Query 835 TCGGAATCTGCTTGTGTGCATCCGCCATTGCACAGCTCTCAAAAGGCAGGAACAAAGAGG 894
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 829 TCGGAATCTGCTTGTGTGCATCGGCCATTGCACAGCTCTCAAAAGGCAGGAACAAAGAGG 888
Query 895 ACAAAGACGCGACGGCAGCCCCAGAGCTTCATTCTCTGGCTGCAGCTGCAGTAGAGAAAG 954
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 889 ACAAAGACGCTACGGCAGCCCCAGAGCTTCATTCCCTGGCTGCAGCTGCAGTAGAGAAAG 948
Query 955 AGTACAAGCAAAAAGCTCCGGACAAACTCCAGCTCATCTCTTCCGCGTTAAGAAGCTTGA 1014
| |||||||||||||| ||||||||||| || |||||||||||||||||||||| |||||
Sbjct 949 AATACAAGCAAAAAGCCCCGGACAAACTTCAACTCATCTCTTCCGCGTTAAGAATCTTGA 1008
Query 1015 AAATTTGATCGCAAGCAAACAAACGATGTTCTGGCCCACAAGACGCAAACG 1065
| | ||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1009 AGACTTGATCGCAAGTAAAC----GATGTTCTGGCCCACAAGACGCAAACG 1055
> AT3G04830.1 | Symbols: | Protein prenylyltransferase superfamily
protein | chr3:1326227-1329364 FORWARD LENGTH=1206
Length=1206
Score = 869 bits (470), Expect = 0.0
Identities = 774/922 (84%), Gaps = 16/922 (2%)
Strand=Plus/Plus
Query 104 AGA-AGAGATGGTGACGAAAACAGAGGAGACGCAATTGAACCAGCTCGAGATTCAAGTCG 162
||| |||||||||||||||||| ||||||| || || ||||| ||||||| |||||| |
Sbjct 55 AGAGAGAGATGGTGACGAAAACGGAGGAGATACAGTTAAACCAACTCGAGAATCAAGTTG 114
Query 163 ATAATGGCGGAGGTGGAGCTTGGGAGTATCTTTGTCTCGTTCGTAATCTCAAAATTCGCC 222
| ||||| ||||| || | |||||||||||| || ||||||||||| ||||| ||||||
Sbjct 115 AGAATGGAGGAGGAGGTGTTTGGGAGTATCTGTGCCTCGTTCGTAAGCTCAAGGTTCGCC 174
Query 223 GGTCGGAGAAAGTGTTAAAACACGGTTC-CTCGATTTTGAATGATCCAAGAAAAAGATCT 281
| || |||| ||| | || || || || |||||| ||||| ||| | |||| ||||
Sbjct 175 GATCAGAGATTGTGCTCAAGCATGG-TCTCTCGATCTTGAACGATTCGGGAAAGCGATCC 233
Query 282 GCTCTTGGTCCAGATGAATGGACCCTAAATGAGCAAGTGGCAATTGCAGCTATGGACTGT 341
|||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||
Sbjct 234 GCTCTTGGTCCAGATGAATGGACCCTGTATGAGCAGGTAGCAATTGCAGCTATGGACTGT 293
Query 342 CAATGTCTCGGTGTTGCACAGAATTGCATTAAGGCTT-TGCAGAAGAAATTTCCTGG-GA 399
|||| |||||||||||||||||||||||| |||| || | ||||||||||||| || ||
Sbjct 294 CAATCTCTCGGTGTTGCACAGAATTGCATCAAGG-TTCTAAAGAAGAAATTTCC-GGAGA 351
Query 400 GCAAAAGGGTTGGGAGGCTTGAGGCGT-TACTTCTTGAAGCCAAGGGATTATGGGGAGAG 458
||||| | ||||| | ||| ||||| | | || || ||||| |||||| | |||| ||||
Sbjct 352 GCAAACGTGTTGGCAAGCTGGAGGC-TCTGCTGCTAGAAGCAAAGGGAATGTGGGAAGAG 410
Query 459 GCTGAGGAAGCATATTCGAGTCTTTTGGAGGATAATCCACTCGACCAAGCGATACACAAA 518
||||| |||||||| | || |||||||||||||||||||| || |||| || ||||||
Sbjct 411 GCTGAAAAAGCATATACAAGCCTTTTGGAGGATAATCCACTTGATCAAGTAATTCACAAA 470
Query 519 CG-AAGAGTGGCTATATCCAAGGCACTAGGCAAACCTTCCATAGCCATTGAGCTTCTTAC 577
| ||| |||||||| ||||||||| ||||||| ||||| |||||||||| | ||| |
Sbjct 471 AGAAAG-GTGGCTATGGCCAAGGCACAAGGCAAATCTTCCTTAGCCATTGAACATCTGAA 529
Query 578 CAAATATCTTGAACTATTCATGGCTGATCATGATGCATGGAGAGAGCTTGCAGAACTTTA 637
||| ||||||||| |||||||||||||||||||||| |||||||| ||||||||| ||||
Sbjct 530 CAAGTATCTTGAAGTATTCATGGCTGATCATGATGCCTGGAGAGAACTTGCAGAAATTTA 589
Query 638 TCTTTCTTTGCAAATGTACAAACAAGCAGCTTTCTGCTACGAAGAGCTCATACTATCTCA 697
| |||| |||||||||||||| |||||||||||||||||||| |||||||||||| ||||
Sbjct 590 TGTTTCCTTGCAAATGTACAAGCAAGCAGCTTTCTGCTACGAGGAGCTCATACTAACTCA 649
Query 698 GCCTACTGTTCCATTGTACCACCTCGCATATGCTGACGTTCTCTATACAATCGGCGGAGT 757
||||||| |||||||||||||| | |||||||| || |||||||| ||||| || ||| |
Sbjct 650 GCCTACTCTTCCATTGTACCACTTAGCATATGCCGATGTTCTCTACACAATAGGTGGACT 709
Query 758 AGAAAACATTATCTCAGCAAGAAAATACTATGCAGCAACCATAGATTTAACAGGCGGCAA 817
||||||| | ||| |||||||||| |||||||||||||| ||||| || ||||| || ||
Sbjct 710 AGAAAACCTCATCGCAGCAAGAAAGTACTATGCAGCAACTATAGACTTGACAGGTGGTAA 769
Query 818 AAACACCAGAGCTCTTCTCGGAATCTGCTTGTGTGCATCCGCCATTGCACAGCTCTCAAA 877
|| ||| ||||| ||||||||||| |||||||||| ||| || || |||||| |||||||
Sbjct 770 AAGCACAAGAGCACTTCTCGGAATATGCTTGTGTGGATCAGCAATCGCACAGATCTCAAA 829
Query 878 AGGCAGGAACAAAGAGGACAAAGACGCGACGGCAGCCCCAGAGCTTCATTCTCTGGCTGC 937
||||||||||||||||||||| ||| | ||| || ||||||||||| ||| |||||||
Sbjct 830 AGGCAGGAACAAAGAGGACAAGGAC---ATGGCTGCACCAGAGCTTCAGTCTTTGGCTGC 886
Query 938 AGCTGCAGTAGAGAAAGAGTACAAGCAAAAAGCTCCGGACAAA-CTCCAGCTCATCTCTT 996
| ||||| | ||| ||||||||||||||||||||| | | || ||| | ||| || |||
Sbjct 887 AACTGCATTGGAGCGAGAGTACAAGCAAAAAGCTCCCG-CTAAGCTCAACCTCCTCACTT 945
Query 997 CCGCGTTAAGAAGCTTGAAAAT 1018
| || || |||| |||||||||
Sbjct 946 CTGCCTTGAGAAACTTGAAAAT 967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52158366255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5