BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489646
Length=2136
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28290.1 | Symbols: ATNEK3, NEK3 | NIMA-related kinase 3 | c... 3354 0.0
AT3G04810.1 | Symbols: ATNEK2, NEK2 | NIMA-related kinase 2 | c... 974 0.0
> AT5G28290.1 | Symbols: ATNEK3, NEK3 | NIMA-related kinase 3 |
chr5:10278691-10282614 REVERSE LENGTH=2149
Length=2149
Score = 3354 bits (1816), Expect = 0.0
Identities = 2041/2148 (95%), Gaps = 21/2148 (1%)
Strand=Plus/Plus
Query 1 AAACTCTGTCGTTTTCCTCAGTCagagagagacacagagagag-aa-agagaag-agaAG 57
||||||||||||||||||||||| |||||||||||||||||| || ||||||| |||||
Sbjct 1 AAACTCTGTCGTTTTCCTCAGTC--AGAGAGACACAGAGAGAGAAAGAGAGAAGAAGAAG 58
Query 58 CACCTCTCATGGCGAACCAGCTTCTTCACCATCTTCCGATTCCATTTCCTCTCCACCGTC 117
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 59 CACCTCTCATGGCGAACCAGCTTCTTCACCATCTTCCGATTCCTTTTCCTCTCCACCGTC 118
Query 118 ACTTCTACCTCCAAAACGCCACCGTTTTATAGCTTCTCCT-CGGAAAATGCCAAACCCAC 176
|||||||||||| ||||||| ||||||||||||||||||| | |||||||| ||||||||
Sbjct 119 ACTTCTACCTCCTAAACGCCGCCGTTTTATAGCTTCTCCTCCCGAAAATGCTAAACCCAC 178
Query 177 ATTCCTCAAATCTCTCACCGACGCTTTTTTAGATTCTTATAGAGGAAGATAATATTTTCT 236
|||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||| |
Sbjct 179 ATTCCTCAAATCTCTCACCGACGCTTTTTTAGATTCTTGTAGAGGAAGAGAATA-TTT-T 236
Query 237 TAAGGAGATTGTTTTCAATGGAGCATTACGAGGTTCTTGAGCAAATTGGGAAAGGTTCTT 296
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TAAGGAGGTTGTTTTCGATGGAGCATTACGAGGTTCTTGAGCAAATTGGGAAAGGTTCTT 296
Query 297 TTGGGTCAGCTCTTCTTGTGAGGCATAAGCATGAGAAGAAACTTTATGTTTTGAAGAAAA 356
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 297 TTGGGTCAGCTCTTCTTGTGAGGCATAAACATGAGAAGAAACTTTATGTTTTGAAGAAAA 356
Query 357 TTCGGTTAGCTAGGCAGACTGGTAGAACAAGAAGGTCTGCTCATCAAGAGATGGAATTGA 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TTCGGTTAGCTAGGCAGACTGGTAGAACAAGAAGGTCTGCTCATCAAGAGATGGAATTGA 416
Query 417 TCTCAAAGATACGAAATCCATTTATCGTGGAATATAAAGATTCTTGGGTTGAAAAAGGGT 476
||||||||||| | ||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 417 TCTCAAAGATAAGGAATCCATTTATTGTGGAATATAAAGATTCTTGGGTTGAGAAAGGTT 476
Query 477 GCTATGTGTGCATTATCATAGGCTATTGCAAAGGCGGTGACATGGCCGAAGCAATAAAGA 536
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 GCTATGTGTGCATTGTCATAGGCTATTGCAAAGGCGGTGACATGGCCGAAGCAATAAAGA 536
Query 537 AAGCCAACGGCGTAGAATTCTCTGAAGAGAAACTCTGCAAATGGCTGGTACAACTCTTAA 596
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 537 AAGCCAACGGCGTAGAGTTCTCTGAAGAGAAACTCTGCAAGTGGCTGGTACAACTCTTAA 596
Query 597 TGGCTCTTGAATACTTGCACGCCAGTCACATTCTCCATCGCGATGTCAAGTGTTCAAACA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TGGCTCTTGAATACTTGCACGCCAGTCACATTCTCCATCGCGATGTCAAGTGTTCAAACA 656
Query 657 TATTCTTGACGAAA-GATCAAGATATACGCCTAGGTGATTTCGGACTTGCCAAGATCTTG 715
|||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 657 TATTCTTGAC-AAAGGATCAAGATATACGCCTAGGTGATTTCGGACTTGCGAAGATCTTG 715
Query 716 ACATCAGACGACCTTGCTTCTTCAGTGGTTGGAACACCAAGCTACATGTGCCCTGAGCTT 775
||||| || |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 716 ACATCTGATGACCTTGCTTCTTCAGTGGTTGGAACGCCGAGCTACATGTGCCCTGAGCTT 775
Query 776 CTTGCTGATATTCCCTACGGATCAAAGTCGGATATTTGGTCGCTGGGGTGTTGTATGTAT 835
|||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 776 CTTGCTGATATTCCCTACGGGTCAAAGTCGGACATTTGGTCGCTGGGTTGTTGTATGTAT 835
Query 836 GAGATGACGGCTCTGAAACCGGCATTCAAAGCCTTTGACATGCAAGGGCTGATCAACAGG 895
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 836 GAGATGACGGCGCTGAAACCGGCATTCAAAGCCTTTGACATGCAAGGTCTGATCAACAGG 895
Query 896 ATAAACCGATCAATCGTTGCTCCACTTCCTGCACAATATTCTACTGCCTTTCGAAGTCTG 955
|||||||| || |||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 896 ATAAACCGGTCCATCGTTGCTCCACTTCCTGCGCAATATTCTACCGCCTTTCGCAGTCTC 955
Query 956 GTTAAAAGCATGCTCAGGAAGAATCCAGAACTCAGACCAAGCGCCTCTGATCTTCTCAGA 1015
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 956 GTTAAAAGCATGCTCAGGAAGAATCCAGAACTCAGACCAAGCGCTTCTGATCTTCTCAGA 1015
Query 1016 CAGCCACTGCTTCAGCCCTACGTTCAAAAGGTTCTTCTCAAGCTGAGCTTCCGGGAACAC 1075
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CAGCCACTACTTCAGCCCTACGTTCAAAAGGTTCTTCTCAAGCTGAGCTTCCGGGAACAC 1075
Query 1076 GATACATTGCCATCTGAATCCGAAAGGAGAAGAAGCTATCCTGAGCAGAGAAGGCGTACT 1135
|||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||
Sbjct 1076 GATACATTGCCATCTGAATCCGAAAGGAGAAGTAGCTATCCTCAGCAGAGAAAGCGTACT 1135
Query 1136 TCTGGCAAAAGTGTGAGCTTCGGTCCAAGCAAGTTTGGTGTTGACCAGGAAGATTCTGTT 1195
||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct 1136 TCTGGCAAAAGTGTGAGCTTCGGTCCAAGCAGGTTCGGTGTTGACCAAGAAGATTCTGTT 1195
Query 1196 TCTTCTGTTAAACCCGTTCACACGTATTTACACCGGCACAGGCCAGTGGATTTGTCTGCC 1255
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1196 TCTTCTGTTAAACCCGTGCACACGTATTTACACCGTCACAGGCCAGTGGATTTGTCTGCA 1255
Query 1256 AATGACACTAGTAGAGTGGTTGTTCGTAGACCCGCTGTTTCGTCAGGGGTTTCTAACAGT 1315
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1256 AATGACACTAGTAGAGTGGTTGTTCGTAGACCCGCTGTTTCTTCAGTGGTTTCTAACAGT 1315
Query 1316 TCAAAATATGTGCCAGTAAGATCAAACCAGCCTAAGAGTGGTGG--T-CTGAAACCTGCG 1372
||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||
Sbjct 1316 TCAAAATATGTGCCAGTGAGATCAAACCAGCCTAAGAGTGGTGGTCTGCTGAAACCTGCG 1375
Query 1373 GCGGCGATTCGTAGGGCATCCTTGCCTGTCTCACATAAACCTGCAAAAGGAACAAAAGAC 1432
| | || ||||||||| ||||| ||| ||||||| ||||||||||||||||||||||||
Sbjct 1376 GTAGTGACTCGTAGGGCCTCCTTACCTATCTCACAGAAACCTGCAAAAGGAACAAAAGAC 1435
Query 1433 ACTCTATACCACCCGAATATCGGTATACTCCATCAGCTAAATTCTCCAGATGTGTCAGTA 1492
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 TCTCTATACCACCCGAACATCGGTATACTCCATCAGCTAAATTCTCCAGATGTGTCAGTA 1495
Query 1493 AACTCTCCAAGAATCGACAGGATCAAATTCCCGTTAGCTTCATATGAAGAAATGCCTTTC 1552
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1496 AACTCGCCAAGAATCGACAGGATCAAGTTCCCGTTAGCTTCATATGAAGAAATGCCTTTC 1555
Query 1553 ATTCCCGTTGTGCGTAAGAAGAAAGGATCGTCCAGAGGATCATACAGCCCGCCTCCAGAG 1612
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 ATTCCCGTTGTTCGCAAGAAGAAAGGATCGTCCAGAGGATCATACAGCCCGCCTCCAGAG 1615
Query 1613 CCACCACTAGACTGCTCTATCACAAAAGACAAATTCACACTTGAACCAGAACGAGAAACC 1672
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1616 CCACCACTAGACTGCTCAATAACAAAAGACAAATTCACACTTGAACCAGAACGAGAAACC 1675
Query 1673 AAAAGTGATTTGTCTGATCAAAATGCAACTGCTGGAGCATCAAGTAGAGCTTCCTCAGGT 1732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 AAAAGTGATTTGTCTGATCAAAATGCAACTGCTGGAGCATCAAGTAGAGCTTCCTCAGGT 1735
Query 1733 GCATCAGGGAGACAAAGATTCGACCCTAGCTCATATCGACAACGAGCTGAGGCACTTGAA 1792
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 GCATCAAGAAGACAAAGATTCGACCCTAGCTCATATCGACAACGAGCTGAGGCACTTGAA 1795
Query 1793 GGACTACTTGAATTCAGTGCAAGATTACTTATAGACGAGAGGTATGATGAGCTGAACGTG 1852
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1796 GGACTACTTGAATTCAGTGCAAGATTACTTATAGACGAGAGGTACGATGAGCTGAACGTG 1855
Query 1853 TTACTGAAACCGTTTGGTCCAGGAAAAGTATCGCCCCGAGAAACCGCGATATGGTTGTCT 1912
||||| ||||| |||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 1856 TTACTAAAACCATTTGGTCCGGGAAAGGTATCGCCAAGAGAAACCGCGATATGGTTGTCT 1915
Query 1913 AAAAGCTTCAAGGAAACTAGTCCTAGTAACCTGGAAGAAGATTGAGAAACAGGGTTT-AA 1971
|||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 1916 AAAAGCTTCAAGGAAAGTAGTCCTAGTAACTTGGAAGAAGATTGAAAAACAGGGTTTTAA 1975
Query 1972 CTCCCTTTTAAAAGTTTTTGAGAGAATGATGATTCCACGATTCGATAGA-AAATTGTTTG 2030
|||| || ||||||||||||||| |||| | |||||||||| |||||| ||||||||||
Sbjct 1976 CTCC-TT--AAAAGTTTTTGAGAGCATGACGTTTCCACGATTTGATAGATAAATTGTTTG 2032
Query 2031 ACACTTAGGCTGTGTTCTTTGAAGCTAACCCCTGTATCCGATACAATGATACCAAAATAT 2090
|| |||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||
Sbjct 2033 ACTCTTAGGCTGTGTTCTTTGAAGCTAACTCCTGTATCTGATACAATGAGACCAAAATAT 2092
Query 2091 ACAGCTTTCTGTTCTCTATGTAATCCTT-ATTCCAGTCAGaaa-aaaa 2136
|||||||||| ||||||||||||||||| |||| |||| |||| ||||
Sbjct 2093 ACAGCTTTCTATTCTCTATGTAATCCTTTATTC-AGTCTGAAACAAAA 2139
> AT3G04810.1 | Symbols: ATNEK2, NEK2 | NIMA-related kinase 2 |
chr3:1317336-1321269 FORWARD LENGTH=2229
Length=2229
Score = 974 bits (527), Expect = 0.0
Identities = 840/985 (85%), Gaps = 46/985 (5%)
Strand=Plus/Plus
Query 247 GTTT-TCAATGGAGCATTACGAGGTTCTTGAGCAAATTGGGAAAGGTTCTTTTGGGTCAG 305
|||| ||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 233 GTTTGTCAATGGAGAATTACGAGGTTCTTGAGCAAATTGGAAAAGGTTCCTTTGGGTCAG 292
Query 306 CTCTTCTTGTGAGGCATAAGCATGAGAAGAAACTTTATGTTTTGAAGAAAATTCGG-TTA 364
||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||| ||
Sbjct 293 CTCTTCTTGTGAGACATAAACATGAGAAGAAACTGTATGTTTTGAAGAAAATCCGGCTT- 351
Query 365 GCTAGGCAGACTGGTAGAACAAGAAGGTCTGCTCATCAAGAGATGGAATTGATCTCAAAG 424
||| ||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 352 GCTCGGCAGACTGGTAGGACAAGAAGATCTGCTCATCAAGAGATGGAGTTGATTTCAAAG 411
Query 425 ATACGA-AATCCATTTATCGTGGAATATAAAGATTCTTGGGTTGAAAAAGGG-TGCTATG 482
|||| | |||||||| || ||||||||||||||||||||||||| ||||||| |||||||
Sbjct 412 ATAC-ATAATCCATTCATTGTGGAATATAAAGATTCTTGGGTTG-AAAAGGGATGCTATG 469
Query 483 TGTGCATTATCATAGGCTATTGCAAAGGCGGTGACATGGCCGAAGCAATAAAGAAAGCCA 542
|||||||||||||||||||||||||||| || |||||||| ||||||||||||||| |||
Sbjct 470 TGTGCATTATCATAGGCTATTGCAAAGGAGGAGACATGGCGGAAGCAATAAAGAAAACCA 529
Query 543 ACGGCGTAGAATTCTCTGAAGAGAAACTCTGCAAATGGCTGGTACA-ACTCTTAATGGCT 601
|||||||| | ||| ||||||||||||||||||||||||| || || | ||||| |||||
Sbjct 530 ACGGCGTACACTTCACTGAAGAGAAACTCTGCAAATGGCTTGTTCAGA-TCTTATTGGCT 588
Query 602 CTTGAATACTTGCACGCCAGTCACATTCTCCATCGCGATGTCAAGTGTTCAAACATATTC 661
|||||||||||||| |||| ||||||||||||||| |||||||||||||| ||||||||
Sbjct 589 CTTGAATACTTGCATGCCAATCACATTCTCCATCGAGATGTCAAGTGTTCGAACATATTT 648
Query 662 TTGACGAAAG-ATCAAGATATACGCCTAGGTGATTTCGGACTTGCCAA-GATCTTGACAT 719
||||| |||| |||||||||||||||| || ||||| ||||| || || | |||| ||||
Sbjct 649 TTGAC-AAAGGATCAAGATATACGCCTTGGCGATTTTGGACTCGCTAAAG-TCTTAACAT 706
Query 720 CAGACGACCTTGCTTCTTCAGTGGTTGGAACACCAAGCTACATGTG-CCCTGAGCTTCTT 778
|||| ||||| || |||||||||||||||||||||||||||||||| ||| ||||| ||
Sbjct 707 CAGATGACCTCGCGTCTTCAGTGGTTGGAACACCAAGCTACATGTGTCCC-GAGCTACTA 765
Query 779 GCTGATATTCCCTACGGATCAAAGTCGGATATTTGGTCGCTGGGGTGTTGTATGTATGAG 838
|||||||| ||||| || || ||||| |||||||||||||| || |||||||||||||||
Sbjct 766 GCTGATATACCCTATGGGTCCAAGTCTGATATTTGGTCGCTAGGATGTTGTATGTATGAG 825
Query 839 ATGACGGCTCTGAAACCGGCATTCAAAGCCTTTGACATGCAAGGGCTGATCAACAGGATA 898
||||||||| ||||||| || |||||||| |||||||||||||| || |||||||||||
Sbjct 826 ATGACGGCTATGAAACCTGCTTTCAAAGCTTTTGACATGCAAGGACTAATCAACAGGATT 885
Query 899 AACCGATCAATCGTTGCTCCACTTCCTGCACAATATTCTACTGCCTTTCGAAGTCTGGTT 958
||| ||||||||||| |||||||||| || ||||||||| ||||||| ||| |||| |||
Sbjct 886 AACAGATCAATCGTTCCTCCACTTCCGGCGCAATATTCTGCTGCCTTCCGAGGTCTCGTT 945
Query 959 AAAAGCATGCTCAGGAAGAATCCAGAACTCAGACCAAGCGCCT-CTGATCTTCTCAGACA 1017
|| || |||||| |||| |||||||||||||||||||| || | |||| ||||| |||||
Sbjct 946 AAGAGTATGCTCCGGAAAAATCCAGAACTCAGACCAAGTGC-TGCTGAGCTTCTTAGACA 1004
Query 1018 GCCACTGCTTCAGCCCTACGTTCAAAAGGTTC-TTCTCAA-GCTGA--GCTTCCGGGAAC 1073
|| |||||||| || || | || ||| ||| || | || | ||| | | || ||||
Sbjct 1005 ACCGCTGCTTCAACCGTATATCCAGAAGATTCATT-TGAAAG-TGAATGAT-CCAGGAAG 1061
Query 1074 -AC-GA-T-ACAT------TG-CCA---TCTGAATCCGAAAGGAGAAGA-AGCTATCCTG 1118
| | | || | || ||| |||||||||| ||||||| | || | ||| |
Sbjct 1062 TAATGTGTTACCTGCGCAATGGCCAGAATCTGAATCCGCCAGGAGAA-ACAGTTTTCCAG 1120
Query 1119 AGCAGAGAAGGCGTACTTCTGGCAAAAGTG-TGAGCTTCGGTCCAAGCAAGTTT-GGTGT 1176
| |||||||||||| || |||||||||| | ||||| |||||||||| |||| || ||
Sbjct 1121 AACAGAGAAGGCGTCCTGCTGGCAAAAGCCAT-AGCTTTGGTCCAAGCAGGTTTAGGGGT 1179
Query 1177 TGACC-AGGAAGATTCTGTTTCTTC 1200
||| || ||||||||||||||||
Sbjct 1180 A-ACCTAG-AAGATTCTGTTTCTTC 1202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105923149950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5