BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489648 Length=628 Score E Sequences producing significant alignments: (Bits) Value AT1G54110.1 | Symbols: | Membrane fusion protein Use1 | chr1:2... 887 0.0 AT3G55600.1 | Symbols: | Membrane fusion protein Use1 | chr3:2... 701 0.0 > AT1G54110.1 | Symbols: | Membrane fusion protein Use1 | chr1:20199418-20201729 FORWARD LENGTH=867 Length=867 Score = 887 bits (480), Expect = 0.0 Identities = 579/626 (92%), Gaps = 10/626 (2%) Strand=Plus/Plus Query 8 TCTCGGAAGAGAAGACCCCTCAAGGGCTTCCCAGAGTTACAAAGGCTAAGGTGAATGAGT 67 |||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||| Sbjct 169 TCTCGGAAGAGAAGACCCTTGAAGGGCTTCCCAGAGTTACAAACGCTAAGGTGAATGAGT 228 Query 68 ACTATGAGAAGATTGAAGCTGTTGCTTCGA-GAATAGCTGCTCAAGTGACTGACACAGAG 126 |||||||||||||||||||||||| ||| | |||||| |||||||||| || |||||||| Sbjct 229 ACTATGAGAAGATTGAAGCTGTTGTTTC-ACGAATAGTTGCTCAAGTGCCTCACACAGAG 287 Query 127 TTTTCTTATGAAAATTTTGCAAAGGATTCGACCAGCGATAGTTCTCCCAATA-TAGAAGA 185 | ||| ||||| ||||||||||||||| || | ||||||||||||||| | ||||||| Sbjct 288 GTATCTGATGAAGCTTTTGCAAAGGATTCTACTAACGATAGTTCTCCCAA-AGTAGAAGA 346 Query 186 CGATACACGAAGCCCCACTTCTCCACAGCTGA-AACGAAGAATCGTGCCTTTATGTTCCA 244 ||||||||||| ||||| |||||||||||||| || |||||||||||||| | |||||| Sbjct 347 CGATACACGAACCCCCAATTCTCCACAGCTGAGAA-GAAGAATCGTGCCTGCAAGTTCCA 405 Query 245 AGGAGCCAAGCTATGACGCTGATCCCTCAAAACCAATAAAACTAGACACCGCAGCTCAAG 304 | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 406 AAGAGCAAAGCTATGACGCTGATCCCTCAAAACCAATAAAACTAGACACCGCAGCTCAAG 465 Query 305 CGCGCA-TTGATAAGCAGAGAAAGCTTCAAGAGGATCTAACCGATGAAATGGTGGTACTT 363 ||| | || | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 466 CGCA-AGTTAACAAGCAGAGAAAGCTTCAAGAGGATCTAACCGATGAAATGGTGGTACTT 524 Query 364 GCGAGACAACTCAAGGAGAGAAGTCAAATGATAAGCCAATCTGTGCAAAATACAGAAAAG 423 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 525 GCGAGACAACTTAAGGAGAGAAGTCAAATGATAAGCCAATCTGTGCAAAATACAGAAAAG 584 Query 424 ATACTTGACTCTACAGAGGAAGCCATTGAGCAAAGCTTGGCAAGCACCAG-ACACGCAAC 482 |||||||| ||||| ||||||||||||||||||||||| |||||||| || ||||||||| Sbjct 585 ATACTTGATTCTACCGAGGAAGCCATTGAGCAAAGCTTAGCAAGCAC-AGGACACGCAAC 643 Query 483 CGTAAGAGCCACAAAGATATATTCAGAAAGCTCAAAGACAAGTTGCTTCCAGTGGCTCTT 542 |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 644 CGTAAGAGCCACAAAGATTTATTCAGAAAGCTCAAAGACGAGTTGCTTCCAGTGGCTCTT 703 Query 543 GATCTTCGCCATGACCTGTGTGTTCATAATGGTTGTCCTGTTGATCCGAGTCACATAGTA 602 |||| |||||||||| ||||||||||| ||||||||| |||||||||||||||||||| | Sbjct 704 GATCCTCGCCATGACATGTGTGTTCATCATGGTTGTCATGTTGATCCGAGTCACATAGAA 763 Query 603 AAGGGTTCCTAGTGTAAACCAAATTA 628 || ||||||||||||||||||||||| Sbjct 764 AATGGTTCCTAGTGTAAACCAAATTA 789 > AT3G55600.1 | Symbols: | Membrane fusion protein Use1 | chr3:20620443-20622470 FORWARD LENGTH=975 Length=975 Score = 701 bits (379), Expect = 0.0 Identities = 553/635 (87%), Gaps = 19/635 (3%) Strand=Plus/Plus Query 8 TCTCGGAAGAGAAGACCCCTCAAGGGCTTCCCAGAGTTACAAAGGCTAAGGTGAATGAGT 67 |||| ||||| || |||||| |||| |||||||||||||||||||||||||| ||||||| Sbjct 245 TCTCCGAAGAAAAAACCCCTGAAGGCCTTCCCAGAGTTACAAAGGCTAAGGTTAATGAGT 304 Query 68 ACTATGAGAAGATTGAAGCTGTTGCTT-CGAGAATAGCTGCTCAAGTGACTGACACAGAG 126 ||||||||||||||||||||||||||| | || |||||| |||||| | |||| |||||| Sbjct 305 ACTATGAGAAGATTGAAGCTGTTGCTTCCAAG-ATAGCTTCTCAAGAGCCTGAGACAGAG 363 Query 127 TTTTCTTATGAAAATTTTGCAAAGGATTCGACCAG-CGATAGTTCTCCCAATATAGAAGA 185 | ||| ||||| |||||||| |||||||| || || || || || || |||||||| Sbjct 364 GTATCTGATGAACCCTTTGCAAAAGATTCGACTAGTGGA-AGCTCACCAAAAATAGAAGA 422 Query 186 CGATACACGAAGCCCCACTTCTCCACAGCTGA-AACGAAGAATCGTGCCTTTATGTTCCA 244 || | |||||||||||||| |||||||||| || |||||||||| ||| | |||||| Sbjct 423 TGAGCCTCGAAGCCCCACTTCGCCACAGCTGAGAA-GAAGAATCGTCCCTGCAAGTTCCA 481 Query 245 AGGAGCCAAGCTATGA--C-GCTGAT-C-----CCTCAAAACCAATAAAACTAGACACCG 295 |||||| ||||| ||| | |||||| | | ||||||||||||||||||||||||| Sbjct 482 AGGAGCAAAGCTTTGATGCTGCTGATGCTGATTCATCAAAACCAATAAAACTAGACACCG 541 Query 296 CAGCTCAAGCGCGCATTGATAAGCAGAGAAAGCTTCAAGAGGATCTAACCGATGAAATGG 355 |||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 542 CAGCTCAAGCGCACATTGACAAGCACAGAAAGCTTCAAGAGGATCTAACCGATGAAATGG 601 Query 356 TGGTACTTGCGAGACAACTCAAGGAGAGAAGTCAAATGATAAGCCAATCTGTGCAAAATA 415 |||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||| Sbjct 602 TGGTACTTGCAAGACAACTCAAGGAGAGAAGTCAAGCGATTAGTCAATCTGTGCAAAATA 661 Query 416 CAGAAAAGATACTTGACTCTACAGAGGAAGCCATTGAGCAAAGCTTGGCAAGCACCA-GA 474 |||||||||||||||||||||| ||||| ||||||||||||||| | || |||| || || Sbjct 662 CAGAAAAGATACTTGACTCTACCGAGGAGGCCATTGAGCAAAGCCTAGCGAGCA-CAGGA 720 Query 475 CACGCAACCGTAAGAGCCACAAAGATATATTCAGAAAGCTCAAAGACAAGTTGCTTCCAG 534 ||||| || |||||| ||||||||||||||| |||||||||||||||||||||||||| Sbjct 721 CACGCGACAACAAGAGCGACAAAGATATATTCACAAAGCTCAAAGACAAGTTGCTTCCAG 780 Query 535 TGGCTCTTGATCTTCGCCATGACCTGTGTGTTCATAATGGTTGTCCTGTTGATCCGAGTC 594 |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||| Sbjct 781 TGGCTCTTGATCTTCGCCATGATCTGTGTGTTCATAATGGTTGTTCTGTTGATCCGGGTC 840 Query 595 ACATAGTAAAGGGTTCCTAGTGTAA-ACCAAATTA 628 |||||| ||| |||| | ||||| ||||||||| Sbjct 841 ACATAG-AAATTGTTCAGATTGTAATACCAAATTA 874 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30291190641 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5