BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489648
Length=628
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54110.1 | Symbols: | Membrane fusion protein Use1 | chr1:2... 887 0.0
AT3G55600.1 | Symbols: | Membrane fusion protein Use1 | chr3:2... 701 0.0
> AT1G54110.1 | Symbols: | Membrane fusion protein Use1 | chr1:20199418-20201729
FORWARD LENGTH=867
Length=867
Score = 887 bits (480), Expect = 0.0
Identities = 579/626 (92%), Gaps = 10/626 (2%)
Strand=Plus/Plus
Query 8 TCTCGGAAGAGAAGACCCCTCAAGGGCTTCCCAGAGTTACAAAGGCTAAGGTGAATGAGT 67
|||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||
Sbjct 169 TCTCGGAAGAGAAGACCCTTGAAGGGCTTCCCAGAGTTACAAACGCTAAGGTGAATGAGT 228
Query 68 ACTATGAGAAGATTGAAGCTGTTGCTTCGA-GAATAGCTGCTCAAGTGACTGACACAGAG 126
|||||||||||||||||||||||| ||| | |||||| |||||||||| || ||||||||
Sbjct 229 ACTATGAGAAGATTGAAGCTGTTGTTTC-ACGAATAGTTGCTCAAGTGCCTCACACAGAG 287
Query 127 TTTTCTTATGAAAATTTTGCAAAGGATTCGACCAGCGATAGTTCTCCCAATA-TAGAAGA 185
| ||| ||||| ||||||||||||||| || | ||||||||||||||| | |||||||
Sbjct 288 GTATCTGATGAAGCTTTTGCAAAGGATTCTACTAACGATAGTTCTCCCAA-AGTAGAAGA 346
Query 186 CGATACACGAAGCCCCACTTCTCCACAGCTGA-AACGAAGAATCGTGCCTTTATGTTCCA 244
||||||||||| ||||| |||||||||||||| || |||||||||||||| | ||||||
Sbjct 347 CGATACACGAACCCCCAATTCTCCACAGCTGAGAA-GAAGAATCGTGCCTGCAAGTTCCA 405
Query 245 AGGAGCCAAGCTATGACGCTGATCCCTCAAAACCAATAAAACTAGACACCGCAGCTCAAG 304
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 AAGAGCAAAGCTATGACGCTGATCCCTCAAAACCAATAAAACTAGACACCGCAGCTCAAG 465
Query 305 CGCGCA-TTGATAAGCAGAGAAAGCTTCAAGAGGATCTAACCGATGAAATGGTGGTACTT 363
||| | || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 CGCA-AGTTAACAAGCAGAGAAAGCTTCAAGAGGATCTAACCGATGAAATGGTGGTACTT 524
Query 364 GCGAGACAACTCAAGGAGAGAAGTCAAATGATAAGCCAATCTGTGCAAAATACAGAAAAG 423
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 GCGAGACAACTTAAGGAGAGAAGTCAAATGATAAGCCAATCTGTGCAAAATACAGAAAAG 584
Query 424 ATACTTGACTCTACAGAGGAAGCCATTGAGCAAAGCTTGGCAAGCACCAG-ACACGCAAC 482
|||||||| ||||| ||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 585 ATACTTGATTCTACCGAGGAAGCCATTGAGCAAAGCTTAGCAAGCAC-AGGACACGCAAC 643
Query 483 CGTAAGAGCCACAAAGATATATTCAGAAAGCTCAAAGACAAGTTGCTTCCAGTGGCTCTT 542
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 644 CGTAAGAGCCACAAAGATTTATTCAGAAAGCTCAAAGACGAGTTGCTTCCAGTGGCTCTT 703
Query 543 GATCTTCGCCATGACCTGTGTGTTCATAATGGTTGTCCTGTTGATCCGAGTCACATAGTA 602
|||| |||||||||| ||||||||||| ||||||||| |||||||||||||||||||| |
Sbjct 704 GATCCTCGCCATGACATGTGTGTTCATCATGGTTGTCATGTTGATCCGAGTCACATAGAA 763
Query 603 AAGGGTTCCTAGTGTAAACCAAATTA 628
|| |||||||||||||||||||||||
Sbjct 764 AATGGTTCCTAGTGTAAACCAAATTA 789
> AT3G55600.1 | Symbols: | Membrane fusion protein Use1 | chr3:20620443-20622470
FORWARD LENGTH=975
Length=975
Score = 701 bits (379), Expect = 0.0
Identities = 553/635 (87%), Gaps = 19/635 (3%)
Strand=Plus/Plus
Query 8 TCTCGGAAGAGAAGACCCCTCAAGGGCTTCCCAGAGTTACAAAGGCTAAGGTGAATGAGT 67
|||| ||||| || |||||| |||| |||||||||||||||||||||||||| |||||||
Sbjct 245 TCTCCGAAGAAAAAACCCCTGAAGGCCTTCCCAGAGTTACAAAGGCTAAGGTTAATGAGT 304
Query 68 ACTATGAGAAGATTGAAGCTGTTGCTT-CGAGAATAGCTGCTCAAGTGACTGACACAGAG 126
||||||||||||||||||||||||||| | || |||||| |||||| | |||| ||||||
Sbjct 305 ACTATGAGAAGATTGAAGCTGTTGCTTCCAAG-ATAGCTTCTCAAGAGCCTGAGACAGAG 363
Query 127 TTTTCTTATGAAAATTTTGCAAAGGATTCGACCAG-CGATAGTTCTCCCAATATAGAAGA 185
| ||| ||||| |||||||| |||||||| || || || || || || ||||||||
Sbjct 364 GTATCTGATGAACCCTTTGCAAAAGATTCGACTAGTGGA-AGCTCACCAAAAATAGAAGA 422
Query 186 CGATACACGAAGCCCCACTTCTCCACAGCTGA-AACGAAGAATCGTGCCTTTATGTTCCA 244
|| | |||||||||||||| |||||||||| || |||||||||| ||| | ||||||
Sbjct 423 TGAGCCTCGAAGCCCCACTTCGCCACAGCTGAGAA-GAAGAATCGTCCCTGCAAGTTCCA 481
Query 245 AGGAGCCAAGCTATGA--C-GCTGAT-C-----CCTCAAAACCAATAAAACTAGACACCG 295
|||||| ||||| ||| | |||||| | | |||||||||||||||||||||||||
Sbjct 482 AGGAGCAAAGCTTTGATGCTGCTGATGCTGATTCATCAAAACCAATAAAACTAGACACCG 541
Query 296 CAGCTCAAGCGCGCATTGATAAGCAGAGAAAGCTTCAAGAGGATCTAACCGATGAAATGG 355
|||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 542 CAGCTCAAGCGCACATTGACAAGCACAGAAAGCTTCAAGAGGATCTAACCGATGAAATGG 601
Query 356 TGGTACTTGCGAGACAACTCAAGGAGAGAAGTCAAATGATAAGCCAATCTGTGCAAAATA 415
|||||||||| |||||||||||||||||||||||| ||| || ||||||||||||||||
Sbjct 602 TGGTACTTGCAAGACAACTCAAGGAGAGAAGTCAAGCGATTAGTCAATCTGTGCAAAATA 661
Query 416 CAGAAAAGATACTTGACTCTACAGAGGAAGCCATTGAGCAAAGCTTGGCAAGCACCA-GA 474
|||||||||||||||||||||| ||||| ||||||||||||||| | || |||| || ||
Sbjct 662 CAGAAAAGATACTTGACTCTACCGAGGAGGCCATTGAGCAAAGCCTAGCGAGCA-CAGGA 720
Query 475 CACGCAACCGTAAGAGCCACAAAGATATATTCAGAAAGCTCAAAGACAAGTTGCTTCCAG 534
||||| || |||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 721 CACGCGACAACAAGAGCGACAAAGATATATTCACAAAGCTCAAAGACAAGTTGCTTCCAG 780
Query 535 TGGCTCTTGATCTTCGCCATGACCTGTGTGTTCATAATGGTTGTCCTGTTGATCCGAGTC 594
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||
Sbjct 781 TGGCTCTTGATCTTCGCCATGATCTGTGTGTTCATAATGGTTGTTCTGTTGATCCGGGTC 840
Query 595 ACATAGTAAAGGGTTCCTAGTGTAA-ACCAAATTA 628
|||||| ||| |||| | ||||| |||||||||
Sbjct 841 ACATAG-AAATTGTTCAGATTGTAATACCAAATTA 874
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30291190641
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5