BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489650
Length=760
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28490.1 | Symbols: LSH1 | Protein of unknown function (DUF6... 1190 0.0
AT3G04510.1 | Symbols: LSH2 | Protein of unknown function (DUF6... 420 1e-116
> AT5G28490.1 | Symbols: LSH1 | Protein of unknown function (DUF640)
| chr5:10454393-10455196 REVERSE LENGTH=804
Length=804
Score = 1190 bits (644), Expect = 0.0
Identities = 723/760 (95%), Gaps = 10/760 (1%)
Strand=Plus/Plus
Query 1 TTTTCCAAAATCAAGAACAAGGaaaaaaaCCATGGATTTGATCTCTCACCAACCAAACAA 60
|||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||
Sbjct 55 TTTTCCAAAATCAAGAACAA-G-AAAAAGCCATGGATTTGATCTCTCACCAACCAAACAA 112
Query 61 GAACCCTAATTCCTCAACACAATTAACACCACCTTCCTCAAGCCGGTACGAGAACCAGAA 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 113 GAACCCTAATTCCTCAACACAACTAACACCACCTTCCTCAAGCCGGTACGAGAACCAAAA 172
Query 121 ACGCCGTGACTGGAACACTTTCTGTCAATACCTCAGGAACCACCGTCCTCCGCTCTCTCT 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 173 ACGCCGTGACTGGAACACTTTCTGTCAATACCTCCGGAACCACCGTCCTCCGCTCTCTCT 232
Query 181 CCCGTCGTGTAGCGGCGCACACGTGCTCGAGTTCCTCCGCTACCTCGACCAGTTCGGAAA 240
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 233 CCCCTCGTGTAGCGGCGCACACGTGCTCGAGTTCCTCCGCTACCTTGACCAGTTCGGGAA 292
Query 241 AACAAAAGTTCACCACCAGAACTGTGCCTTCTTCGGCCTCCCCAACCCTCCTGCTCCTTG 300
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 293 AACAAAAGTTCACCACCAGAACTGTGCCTTCTTTGGCCTCCCTAACCCTCCTGCTCCTTG 352
Query 301 TCCTTGCCCTCTCCGGCAAGCTTGGGGATCACTCGACGCTCTCATCGGCCGCCTCCGCGC 360
|||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 353 TCCTTGTCCTCTCCGGCAAGCTTGGGGCTCACTCGACGCTCTTATCGGCCGCCTCCGCGC 412
Query 361 CGCCTACGAGGAGAACGGTGGCCCTCCTGAAGCTAACCCATTTGGCTCACGCGCCGTCAG 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 413 CGCCTACGAGGAGAACGGTGGCCCACCTGAAGCTAACCCATTTGGCTCACGCGCCGTCAG 472
Query 421 GTTATTCCTCCGTGAAGTCAGAGACTTTCAAGCCAAAGCTCGTGGTGTTAGCTATGAGAA 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 473 GTTATTCCTCCGTGAAGTCAGAGACTTTCAAGCCAAAGCTCGAGGTGTTAGCTATGAGAA 532
Query 481 GAAGAGGAAGAGAGTCAATAGACAGAAACTGCAAACGCAGCCGCCTCTACCGCTTCAGCA 540
|||||||||||||||||| || ||||||| |||||||||||||||||||| |||||||||
Sbjct 533 GAAGAGGAAGAGAGTCAACAGGCAGAAACCGCAAACGCAGCCGCCTCTACAGCTTCAGCA 592
Query 541 ACAACAGCAGCAGCAGCAGCCTCAACAAGGTCAGTCTTTGATGGCTAATTACTCGGGTGC 600
||| ||| | |||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 593 ACA---GCA--A-CAGCAGCCACAACAAGGTCAGTCTATGATGGCTAATTACTCGGGTGC 646
Query 601 AACAGTATGATCATATTTATATAATTTCCCCTTTTTACTATATGTATTGTCTCTTATTTG 660
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 647 AACAGTATGATCATATTTATATAATTTCCCCTTTT--CTATATGTATTGTCTCTTATTTG 704
Query 661 CTTTATCTAAGTTTTTAATGTAATATCTTCTTTTACATTATCCACTGATGCTTTTGTTTC 720
|||| |||||| | ||||||||| | |||||||||||||||| |||||||||||||||||
Sbjct 705 CTTTCTCTAAGATATTAATGTAAAACCTTCTTTTACATTATCTACTGATGCTTTTGTTTC 764
Query 721 TGTACTAGTTGTTTATGAATAAGATAAACTACGATTATTT 760
|||||||||||||||||||||||| |||||||||||||||
Sbjct 765 TGTACTAGTTGTTTATGAATAAGAAAAACTACGATTATTT 804
> AT3G04510.1 | Symbols: LSH2 | Protein of unknown function (DUF640)
| chr3:1215636-1216958 REVERSE LENGTH=1323
Length=1323
Score = 420 bits (227), Expect = 1e-116
Identities = 353/414 (85%), Gaps = 8/414 (2%)
Strand=Plus/Plus
Query 89 CCACCTTCCTCAAGCCGGTACGAGAACCAGAAACGCCGTGACTGGAACACTTTCTGTCAA 148
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 623 CCACCTTCCTCTAGCCGCTACGAGAACCAGAAACGCCGTGACTGGAACACTTTCTGCCAA 682
Query 149 TACCTCAGGAACCACCGTCCTCCGCTCTCTCTCCCGTCGTGTAGCGGCGCACACGTGCTC 208
|||||||| ||||||| ||| ||||||||||| | || || || ||||||||||| |||
Sbjct 683 TACCTCAGAAACCACCATCCACCGCTCTCTCTAGCTTCTTGCAGTGGCGCACACGTCCTC 742
Query 209 GAGTTCCTCCGCTACCTCGACCAGTTCGGAAAAACAAAAGTTCACCACCAGAACTGTGCC 268
|| || || || ||||| ||||| ||||| ||||| ||||| |||||||| ||||| |||
Sbjct 743 GATTTTCTGCGTTACCTTGACCAATTCGGCAAAACCAAAGTCCACCACCAAAACTGCGCC 802
Query 269 TTCTTCGGCCTCCCCAACCCTCCTGCTCCTTGTCCTTGCCCTCTCCGGCAAGCTTGGGGA 328
||||| |||||||| || || || |||||||||||||| |||||||| ||||| |||||
Sbjct 803 TTCTTTGGCCTCCCAAATCCACCGGCTCCTTGTCCTTGTCCTCTCCGACAAGCCTGGGGC 862
Query 329 TCACTCGACGCTCTCATCGGCCGCCTCCGCGCCGCCTACGAGGAGAACGGTGGCCCTCCT 388
||||||||||| ||||| || || ||||| || ||||||||||||||||||||| ||||
Sbjct 863 TCACTCGACGCCCTCATTGGTCGTCTCCGTGCAGCCTACGAGGAGAACGGTGGCGCTCCC 922
Query 389 GA-AGCTAACCCATTTGGCTCACGCG-CCGTCAGG-TTATTCCTCCGTGAAGTCAGAGAC 445
|| | ||| ||| ||||||||||| | |||||||| || |||||| | || || |||||
Sbjct 923 GAGA-CTAGCCCTTTTGGCTCACG-GTCCGTCAGGATT-TTCCTCAGGGAGGTTAGAGA- 978
Query 446 TTTCAAGCCAAAG-CTCGTGGTGTTAGCTATGAGAAGAAGAGGAAGAGAGTCAA 498
|||| || | ||| | ||||||||||||||||||||||||||||| || |||||
Sbjct 979 TTTCCAGGCTAAGTCACGTGGTGTTAGCTATGAGAAGAAGAGGAAAAGGGTCAA 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36922098045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5