BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489653

Length=654
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G28590.1 | Symbols:  | DNA-binding family protein | chr5:105...   845    0.0  


> AT5G28590.1 | Symbols:  | DNA-binding family protein | chr5:10579446-10581559 
REVERSE LENGTH=651
Length=651

 Score =  845 bits (457),  Expect = 0.0
 Identities = 543/582 (93%), Gaps = 16/582 (3%)
 Strand=Plus/Plus

Query  87   GAAAACTGGGCAAAGTTTTACTCCACACATTGTTAATATAACTCCTGGTGAGGATGTGGC  146
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  72   GAAAACTGGGCAATGTTTTACTCCACACATTGTTAATATAACTCCTGGTGAGGATGTGGC  131

Query  147  GCAGAAAATTGTCCTTTTCGCTCAGCAAAGCAAGCATGAGTTGTGCGTTCTTTCTGCATC  206
            | |||| ||||| |||||| ||||||||||||||||| |||| || ||||||||||||||
Sbjct  132  GGAGAAGATTGTTCTTTTCACTCAGCAAAGCAAGCATCAGTTATGTGTTCTTTCTGCATC  191

Query  207  TGGCTCCATCTCTAATGCATCCTTGTCTCAC-TTGGCATCAGGAACCAGTCACGGTGGTA  265
            ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||
Sbjct  192  TGGCTCCATCTCTAATGCATCCTTGTCTCACCTTG-CATCAGGAACCAGTCACGGGGGTA  250

Query  266  AAACTGGTGGCCTTAGTGTTTGTTTATCTAGTTCAGATGGTCAGATATTTGGTGGAGGAG  325
            |||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||
Sbjct  251  AAACTGGTGGCCTTAGCGTTTGTTTATCTAATTCAGATGGTCAGATCTTTGGTGGAGGAG  310

Query  326  TTGGGGGACTCCTAAAGGCTGCTGGTCCAGTTCAGGTGGTTCTTGGCACGTTTCAGCTAG  385
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  311  TTGGGGGACTCCTAAAGGCTGCTGGTCCAGTCCAGGTGGTTCTTGGCACGTTTCAGCTAG  370

Query  386  aaaaaaaGAAGGATGGAAGAAATGGTGTGAAAGGAGATGATGCTTCGGGAAGTGGAAACA  445
            | ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct  371  AGAAAAAGAAGGATGGAAGAAATGGTGCGAAAGGAGATGATGCTTCGGGAAGTAGAAACA  430

Query  446  TGTTACCTTCTCCTTCTGGCACAGAATCTTTGCTTGG-CTACCATCCTGATATGGAA---  501
            ||||||||||||||||||| |||||||||||| |||| ||||||||| |||||||||   
Sbjct  431  TGTTACCTTCTCCTTCTGGTACAGAATCTTTG-TTGGGCTACCATCCCGATATGGAATCT  489

Query  502  -----AA----TCCAAACGATGAGCATCACACTATTACTAGTAGTGCATTGGGTGGTGGA  552
                 ||    |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  490  TCCGGAAGAAATCCAAACGATGAGCATCATACTATTACTAGTAGTGCATTGGGTGGTGGA  549

Query  553  GCTCATTTCATGATGCAACCATCTCAGGGCATGCAAATGACACATGCCCGACCTTCTGAA  612
            ||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct  550  GCTCATTTCATGATGAAACCACCTCAGGGCATGCACATGACACATGCCCGACCTTCTGAA  609

Query  613  TGGGGCGGTACTGGGTATGATTTGTCAGGTAAAATTAGCTAA  654
            |||||||||||||||||||||||||||||||||| |||||||
Sbjct  610  TGGGGCGGTACTGGGTATGATTTGTCAGGTAAAAGTAGCTAA  651



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31597278463


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5