BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489654
Length=450
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28610.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 604 2e-172
AT5G28630.1 | Symbols: | glycine-rich protein | chr5:10636631-... 246 1e-64
> AT5G28610.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: glycine-rich protein (TAIR:AT5G28630.1); Has 1536 Blast
hits to 1202 proteins in 136 species: Archae - 0; Bacteria
- 8; Metazoa - 888; Fungi - 120; Plants - 71; Viruses -
39; Other Eukaryotes - 410 (source: NCBI BLink). | chr5:10610959-10611446
FORWARD LENGTH=488
Length=488
Score = 604 bits (327), Expect = 2e-172
Identities = 393/423 (93%), Gaps = 11/423 (3%)
Strand=Plus/Plus
Query 38 TAGACTCGTCGCCGGAAAAGGAGAAGG-AAAAATCCCATAAGCATAGAGGACTATTTCAC 96
||||||| ||||| |||||||||| || ||||| | |||||||||||||||||||| |||
Sbjct 46 TAGACTCATCGCCAGAAAAGGAGATGGCAAAAA-CACATAAGCATAGAGGACTATTCCAC 104
Query 97 CTCCACCATCACTCaaaagatgagaaagatgaagacaaaaagaaagaaggatcaaagaga 156
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 105 CTCCACCACCACTCAAAAGATGAGAAAGATGAAGACAAAAAGAAAGAAGGATCAAAGAGA 164
Query 157 gagaagatAGCTGCAGCAATGGTTGGTCTTGGAGCCACACTCAAGAAAGTTAAGCATCCG 216
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 165 GAGAAGATAGCTGCAGCAATGGTTGGTCTCGGAGCCACACTCAAGAAAGTTAAGCATCCA 224
Query 217 CGCCACCATggaagcggtggaaaagaggaacaagaaggagcagcagaggaagaagaagta 276
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 225 CGCCACCATGGAAGTGGTGGACAAGAGGAACAAGAAGGAGCAGCAGAGGAAGAAGAAGTA 284
Query 277 gaagaagaagaagaagaggaagaggaagatgatggtggagatgaagaagagggaggCAAG 336
||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 285 GAAGAAGAAGAGGAGGAGGAGGAGGAAGATGATGGTGGAGATGAAGAAGAGGGAGGCAAG 344
Query 337 TTTAGTGCTTTCATTTCGATGATCGCCGAAGCATTTGAAGAATAGT--TTGT--T--GT- 389
||||||||||||||||||||||||||||||||||||||||||||| |||| | ||
Sbjct 345 TTTAGTGCTTTCATTTCGATGATCGCCGAAGCATTTGAAGAATAGAAATTGTAATTTGTT 404
Query 390 AT-TTT-GTTTATCCTAACTTGTTATCAAATTTAGTATTTGTAACGTTTCCCTCTTAGCA 447
|| ||| |||||| | |||||| ||||||||||||||||||||| |||||| ||||||||
Sbjct 405 ATATTTTGTTTATTCAAACTTGCTATCAAATTTAGTATTTGTAATGTTTCCTTCTTAGCA 464
Query 448 AAC 450
|||
Sbjct 465 AAC 467
> AT5G28630.1 | Symbols: | glycine-rich protein | chr5:10636631-10637249
FORWARD LENGTH=619
Length=619
Score = 246 bits (133), Expect = 1e-64
Identities = 164/178 (92%), Gaps = 5/178 (3%)
Strand=Plus/Plus
Query 18 CGAACGAGGCATCGGAACACTA-GACTCGTCGCCGGAAAAGGAGAAGGAAAAATCCCATA 76
|||| ||||||| ||| ||| | ||||| ||||| |||||||||||||||||||| ||||
Sbjct 101 CGAAAGAGGCATTGGATCAC-ACGACTCATCGCCTGAAAAGGAGAAGGAAAAATCTCATA 159
Query 77 AGCATAGAGGACTATTTCACCTCCACCATCACTCaaaagatgagaaagatgaagacaaaa 136
||||||||||| |||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 160 AGCATAGAGGATTATTCCACCT---CCATCACTCAAAAGATGAGAAAGATGGAGACAAAA 216
Query 137 agaaagaaggatcaaagagagagaagatAGCTGCAGCAATGGTTGGTCTTGGAGCCAC 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 AGAAAGAAGGATCAAAGAGAGAGAAGATAGCTGCAGCAATGGTTGGTCTTGGAGCCAC 274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21414061074
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5