BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489655

Length=573
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G28630.1 | Symbols:  | glycine-rich protein | chr5:10636631-...   662    0.0  


> AT5G28630.1 | Symbols:  | glycine-rich protein | chr5:10636631-10637249 
FORWARD LENGTH=619
Length=619

 Score =  662 bits (358),  Expect = 0.0
 Identities = 496/558 (89%), Gaps = 28/558 (5%)
 Strand=Plus/Plus

Query  1    AATTCACGATTTGAGAGAAAGAACTAAAAACATCAAGaaaa-aaaaaGAGAGAAAGAGGA  59
            ||||||||||||| |||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct  1    AATTCACGATTTGGGAGAAAGAACTAAAAACACCAAGAAAATAAAAAAAGAGAAAGAGGA  60

Query  60   TGGAGAAACAATTACATGAATCCATGGAGGCTACTTATATCGAAAAAGGCATCGGAACAC  119
            |||||||| | ||||||||||||| || ||||||||| | ||||| |||||| ||| |||
Sbjct  61   TGGAGAAAGAGTTACATGAATCCAAGGTGGCTACTTACACCGAAAGAGGCATTGGATCAC  120

Query  120  AAGACTCATCGCCGGAAAAGGAGAAGGAAAAATCCCATAAGCATAGAGGACTT-TTCCAT  178
            | ||||||||||| |||||||||||||||||||| ||||||||||||||| || ||||| 
Sbjct  121  ACGACTCATCGCCTGAAAAGGAGAAGGAAAAATCTCATAAGCATAGAGGA-TTATTCCA-  178

Query  179  CTCCACCATCACTCaaaagatgagaaagatgaagacaaaaagaaagaaggatcaaagaga  238
              || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  179  --CCTCCATCACTCAAAAGATGAGAAAGATGGAGACAAAAAGAAAGAAGGATCAAAGAGA  236

Query  239  gagaagatAGCTGCAGCAATGGTTGGTCTTGGAGCCACTCTTAAGAAGATTAAGCACGGA  298
            ||||||||||||||||||||||||||||||||||||||| ||| |||||  ||||||  |
Sbjct  237  GAGAAGATAGCTGCAGCAATGGTTGGTCTTGGAGCCACTTTTATGAAGAAGAAGCACAAA  296

Query  299  GGCGGTggaaaaaagaaaaaaagaggaggaggaggag-aa--gagga-g--ggaggag-a  351
            || |||||||||||| ||||||||||||||||||||| ||  ||||| |  ||||||| |
Sbjct  297  GGTGGTGGAAAAAAGGAAAAAAGAGGAGGAGGAGGAGGAAAAGAGGAAGAAGGAGGAGGA  356

Query  352  -a-gaggagggagaagaagaagaggagtc-t-t-catcggaggaggaagaagaagaag--  404
             | |||||||||||||||||||||||||| | | ||||||||||||||||||||||||  
Sbjct  357  GAAGAGGAGGGAGAAGAAGAAGAGGAGTCGTCTTCATCGGAGGAGGAAGAAGAAGAAGAA  416

Query  405  ga-ggtg-a--tggtgg-gga--tgaagaagagggaggaggCAAGTTTAGTGCTTTCATT  457
            || || | |  |||||| |||  |||||||||||||||||||||||||||||||||||||
Sbjct  417  GAAGGAGGAGGTGGTGGTGGAGATGAAGAAGAGGGAGGAGGCAAGTTTAGTGCTTTCATT  476

Query  458  TCAATGATCGCCGAAGTCTTTGAAGAATGATAATTTCATTTGTGATCAGTTTGTTATCAG  517
             ||||||||||||||| ||||||||||||| ||||| ||||||||||| ||| || ||| 
Sbjct  477  ACAATGATCGCCGAAGCCTTTGAAGAATGAAAATTTAATTTGTGATCACTTTCTTGTCAT  536

Query  518  ttttttttttt-CAAATT  534
            ||||||||||| ||||||
Sbjct  537  TTTTTTTTTTTTCAAATT  554



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27528312556


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5