BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489657
Length=1025
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28650.1 | Symbols: WRKY74, ATWRKY74 | WRKY DNA-binding prot... 1447 0.0
> AT5G28650.1 | Symbols: WRKY74, ATWRKY74 | WRKY DNA-binding protein
74 | chr5:10677716-10679204 REVERSE LENGTH=1326
Length=1326
Score = 1447 bits (783), Expect = 0.0
Identities = 939/1012 (93%), Gaps = 19/1012 (2%)
Strand=Plus/Plus
Query 6 AAACATGGAAGAAGTTGAAGCTGCAAACAAAGCAGCAGTGGAAAGCTGTAATGGAGTATT 65
||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 257 AAA-ATGGAAGAAGTTGAAGCTGCAAACAAAGCAGCAGTGGAAAGTTGTCATGGAGTATT 315
Query 66 GAATCTCTTATCACAACAAACCAATGATTCCAAATCCATAATGGTTGAAACAAGAGAAGC 125
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 316 GAATCTCTTATCACAACAAACCAATGATTCCAAATCAATAATGGTTGAAACAAGAGAAGC 375
Query 126 AGTTTCCAAGTTCAAGAGAGTCTCCTCTCTTTTAG-CTAGAGGGTTAGGTCAAAGGAAGA 184
|||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 376 TGTTTGCAAGTTCAAGAGAGTCTCCTCTCTTTT-GTCTAGAGGGTTAGGTCAAAGGAAGA 434
Query 185 TTAAGAAACT------CAACAACTACAAGTTTAGCTCTTCTTTGTTGCCTCAACACATGT 238
| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 435 TAAAGAAACTCAACAACAACAACTACAAGTTTAGCTCTTCTTTGTTGCCACAACACATGT 494
Query 239 TTTTGGAGAGTCCCATTTGCAGTAATAATGCTATAAGTGGTAGTATTCCAGTTCTAGCAC 298
||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 495 TTTTGGAGAGTCCTGTTTGCAGTAATAATGCTATAAGTGGTTGTATTCCAATTCTAGCAC 554
Query 299 CAAAGCCTCTTCAGATTGTACCAGCAAGTCATCCTCCATTGATGTTGTTTAACCAGAAAA 358
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
Sbjct 555 CAAAGCCTCTTCAGATTGTACCAGCTGGTCCTCCTCCATTGATGTTGTTTAACCAGAATA 614
Query 359 TGTGTGTTGACAAGTCCTTTCTCGAGCTAAAGCCACCGTCTTTTCGAGCTGTTGATCCAA 418
||||| |||| ||||| ||||||||||| |||||||| |||| ||||||||||||||||
Sbjct 615 TGTGTCTTGATAAGTCGTTTCTCGAGCTGAAGCCACCCTCTTCACGAGCTGTTGATCCAA 674
Query 419 AACCTTATCAGGTTATTCATAACCATCAGCAAGGAGTGTACTCTAGGAGCAAAAGTGGTT 478
||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 675 AACCTTATCAGTTTATTCATACCCATCAGCAAGGAGTGTACTCAAGGAGCAAAAGTGGTT 734
Query 479 TAAATCTAAAGTTTGATGGGTCTGGTGGTGTTAGTTGTTATTCACCAAGTATGTCAAATG 538
| ||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||
Sbjct 735 TGAATCTAAAGTTTGATGGGTCTATTGGTGCTAGTTGTTATTCACCAAGTATATCAAATG 794
Query 539 GATCAAGATCGTTTGTTTCATCTCTTAGTATGGATGGTAGTGTGACAGATTACGATATG- 597
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 795 GGTCAAGATCGTTTGTTTCATCTCTTAGTATGGATGGTAGTGTGACGGATTACGATA-GA 853
Query 598 AACTCGTTTCATTTAATCGGATTACCTCAAGGATCCGATCATATATCGCAACATTCTAGG 657
||||| |||||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 854 AACTCTTTTCATTTGATTGGATTACCTCAAGGTTCCGATCATATATCGCAACATTCTAGG 913
Query 658 AGGACTAGTTGCTCTGGTAGTTTGAAATGTGGAAGTAGAAGCAAATGTCATTGTTCCAAG 717
||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||
Sbjct 914 AGGACTAGTTGCTCTGGTAGTTTAAAATGTGGAAGTAAAAGCAAATGCCATTGTTCCAAG 973
Query 718 AAAAGGAAAAGTGTCCTAAGGGTGAAACGAACAATCAGAGTACCGGCAATCAGTAACAAG 777
|||||| ||| | |||||||||||||| | || | ||||||||||||||||||||||
Sbjct 974 AAAAGG-AAA---T--TAAGGGTGAAACGATCGATTAAAGTACCGGCAATCAGTAACAAG 1027
Query 778 ATTGCGGATATACCTCCTGATGAATATTCGTGGAGGAAGTATGGACAGAAGCCGATAAAG 837
|||||||| |||||||| ||||||||||| |||||||| || ||||| |||||||| |||
Sbjct 1028 ATTGCGGACATACCTCCCGATGAATATTCATGGAGGAAATACGGACAAAAGCCGATTAAG 1087
Query 838 GGTTCTCCACATCCTAGGGGATACTATAAATGTAGCAGTGTGCGCGGTTGTCCAGCAAGG 897
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1088 GGTTCTCCTCATCCTAGGGGATACTATAAATGTAGCAGTGTGCGCGGTTGTCCAGCGAGG 1147
Query 898 AAGCATGTTGAGCGATGTGTAGATGAAACTTCGATG-TTAATTGTGACTTATGAAGGCGA 956
||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||
Sbjct 1148 AAGCATGTTGAGCGATGTGTAGAAGAAACTTCGATGCTT-ATTGTGACTTATGAAGGCGA 1206
Query 957 GCATAACCATTCAAGAATACTCTCTTCTCAATCAGCTCATACCTGATTGATT 1008
|||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1207 GCATAACCATTCAAGAATACTCTCTTCTCAATCAGCTCATACTTGATTGATT 1258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50234147000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5