BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489661

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G28750.1 | Symbols:  | Bacterial sec-independent translocati...   765    0.0  


> AT5G28750.1 | Symbols:  | Bacterial sec-independent translocation 
protein mttA/Hcf106 | chr5:10783983-10785722 REVERSE LENGTH=648
Length=648

 Score =  765 bits (414),  Expect = 0.0
 Identities = 473/501 (94%), Gaps = 6/501 (1%)
 Strand=Plus/Plus

Query  1    CACAGATAACATTTAGAACCAGAAGAAGaaaaaaaCAAGTAGCAGCAATGGCGACATCTG  60
            |||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||
Sbjct  1    CACAGATAACATTTAGAACCAGAA-AA-AAAAAAAAAAGTAGCAGCAATGGCGACATCTG  58

Query  61   TTGCGActctatcttctcctccaccagtatctctatctctcctctcatcatctcgctctt  120
            ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct  59   TTGCGACTCTATCTTCTCCACCACCAGTATCTCTACCTCTCCTCTCATCATCTCGCTCTT  118

Query  121  ccttcttctccAATTGTTTCACAGTCACGACCCGACCAAACAAC-CGTTCTTTGGTTGCG  179
            |||||||||||||||| |||||||||||||||||||||||| || |||||| |||| |||
Sbjct  119  CCTTCTTCTCCAATTGCTTCACAGTCACGACCCGACCAAAC-ACTCGTTCTCTGGTAGCG  177

Query  180  ATTCGACCG-AGAATCCGACAGGAACCGACGCGAAAGCGACTCACTTGTAATGCTTTGTT  238
            ||| || || ||||||||||| ||||| ||| |||||| ||| |||||||||||||||||
Sbjct  178  ATTGGA-CGCAGAATCCGACAAGAACCAACGAGAAAGCCACTGACTTGTAATGCTTTGTT  236

Query  239  TGGTCTCGGTGTACCTGAACTTGCTGTGATTGCTGGCGTCGCTGCGTTGCTCTTTGGACC  298
            |||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct  237  TGGTCTCGGTGTGCCTGAGCTTGCTGTGATTGCTGGCGTCGCTGCGTTGCTTTTTGGACC  296

Query  299  TAAGAAGCTTCCTGAGATTGGCAAGAGTATTGGCAAAACCGTCAAGAGCTTTCAACAGGC  358
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TAAGAAACTTCCTGAGATTGGCAAGAGTATTGGCAAAACCGTCAAGAGCTTTCAACAGGC  356

Query  359  TGCAAAAGAGTTCGAGTCTGAGCTTAAGACAGAACCCGAAGATTCTGTTGCAGACTCATC  418
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct  357  TGCAAAAGAGTTCGAGTCTGAGCTTAAGACAGAACCCGAAGAGTCTGTTGCAGAATCATC  416

Query  419  TCAGGTAACAATGAGCAACAAAGAAGATGAGaaaaaaaCTGAGGTTTCTTCAAGCTCAAA  478
            ||||||| ||| ||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  417  TCAGGTAGCAACGAGTAACAAAGAAGAGGAGAAAAAAACTGAGGTTTCTTCAAGCTCAAA  476

Query  479  GGAGAATGTATGAAGATGAGA  499
            |||||||||||||||||||||
Sbjct  477  GGAGAATGTATGAAGATGAGA  497



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25619414970


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5