BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489663
Length=1061
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28770.2 | Symbols: BZO2H3 | bZIP transcription factor famil... 1524 0.0
> AT5G28770.2 | Symbols: BZO2H3 | bZIP transcription factor family
protein | chr5:10796459-10798222 REVERSE LENGTH=1209
Length=1209
Score = 1524 bits (825), Expect = 0.0
Identities = 985/1060 (93%), Gaps = 20/1060 (2%)
Strand=Plus/Plus
Query 21 ATGGAAAAAGTTTTCTCCGACGAAGAAATCTCAGGTAACCATCATTGGTCGGTTAATGGA 80
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 76 ATGGAAAAAGTTTTCTCCGACGAAGAAATCTCCGGTAACCATCACTGGTCGGTTAATGGA 135
Query 81 ACAACGGCGATGAATCGTAGTGCCTCCGAATGGGCATTCCAA-CGTTTCTTACAAGAAT- 138
| ||| || ||||||| ||||| |||||||||||||| ||| |||||| |||||||||
Sbjct 136 ATGACGTCGTTGAATCGCAGTGCTTCCGAATGGGCATT-CAATCGTTTCATACAAGAATC 194
Query 139 CT-------T-CTG-C--CGGAGAGTCTACGACGGCGTGTGGTGTTTCCGTCTCTTCTCC 187
|| | | | | |||||| ||||||||||||||||||||||||||||| |||||
Sbjct 195 CTCCGCCGCTGCAGACGACGGAGAATCTACGACGGCGTGTGGTGTTTCCGTCTCCTCTCC 254
Query 188 TCCGAATGTTCCTGTTGATTCAGATGAATACAGAGCATTTCTGAAGAGTAAACTTAATCT 247
||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 255 TCCTAATGTTCCTGTAGATTCAGAGGAATACAGAGCATTTCTCAAGAGTAAACTTAATCT 314
Query 248 TGCTTGTGCTGCTGTCGCCATGAAAAGGGGATCTTTCATCAAACCTCAGGATACTTCTGG 307
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 315 TGCTTGTGCTGCTGTCGCCATGAAAAGGGGAACTTTCATCAAACCTCAGGATACTTCTGG 374
Query 308 TAGATCTGACAATGGTGGAGCCACTGCATCAGAACAAGGCTCTCTAGCTTCTTCTAAAGC 367
||||||||||||||||||||||| || ||||||||||| |||||| |||||||| |||||
Sbjct 375 TAGATCTGACAATGGTGGAGCCAATGAATCAGAACAAGCCTCTCTTGCTTCTTCCAAAGC 434
Query 368 CACACCAATGATGAGCAGTGCTATAACAAGTGGATCTGAGCTCTCTGGTGATGAAGAAGA 427
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 TACACCAATGATGAGCAGTGCTATAACAAGTGGATCTGAGCTCTCTGGTGATGAAGAAGA 494
Query 428 AGCTGATGGTGAAACTAATATGAACCCTACTAATGTTAAACGCGTGAAAAGGATGCTCTC 487
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 495 AGCTGATGGTGAAACTAATATGAACCCTACTAATGTTAAACGCGTTAAAAGGATGCTCTC 554
Query 488 TAACAGAGAATCAGCTAGACGGTCCAGAAGACGAAAGCAAGCACACTTGAGTGAGCTAGA 547
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 555 TAATAGAGAATCAGCTAGACGGTCCAGAAGAAGAAAGCAAGCACACTTGAGTGAGCTAGA 614
Query 548 GACACAAGTTTCACAGCTGCGTGTAGAGAATTCAAAGCTCATGAAGGGTCTCACTGATGT 607
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 615 GACACAAGTTTCACAGCTTCGTGTAGAGAATTCAAAACTCATGAAGGGTCTCACTGATGT 674
Query 608 AACTCAGACATTCAATGAGGCATCTGTAGAAAACAGAGTTTTAAAAGCCAATATCGAGAC 667
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 675 AACTCAAACATTCAATGATGCATCTGTAGAAAACAGAGTTTTAAAAGCCAATATTGAGAC 734
Query 668 TTTACGAGCAAAGGTGAAAATGGCTGAAGAGACTGTGAAGAGACTCACTGGCTTTAACCC 727
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 735 ACTACGAGCAAAGGTGAAAATGGCTGAAGAGACAGTGAAGAGACTCACTGGCTTTAACCC 794
Query 728 AATGTTCCACACTATGCCTCAGATTGTTTCAACTGTTTCTCTTCCTTCAGAGACTTCAAA 787
||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 795 AATGTTCCACAATATGCCTCAGATTGTTTCAACTGTCTCTCTTCCTTCAGAGACATCAAA 854
Query 788 TTCTCTAGAGACCACAAGCAGCCAAGTTACCGCACCAGAGATCATCAGCTCGGGGAACAA 847
||||| ||| || |||||||||||||| || ||||||||||||| ||||||||||||||
Sbjct 855 TTCTCCAGACACTACAAGCAGCCAAGTGACTACACCAGAGATCATTAGCTCGGGGAACAA 914
Query 848 AAGCAAGGCCTTGATTGGGTGCAAGATGAACAGAACAGCTTCGATGCGTAGAGTTGAGAG 907
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 AGGCAAGGCCTTGATAGGGTGCAAGATGAACAGAACAGCTTCGATGCGTAGAGTTGAGAG 974
Query 908 CTTGGAACATCTGCAGAAACGTATTCGAAGCGTTGGGGACCAGTAGCTGCTAAAGAAGAA 967
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 975 CTTGGAACATCTGCAGAAACGTATTCGAAGCGTTGGGGATCAGTAGCTGTTAAAGAAGAA 1034
Query 968 TCTTGATTTGTAACATTA-TC--AAGAGAGATGTTAAGACAAA-TGCTGTGTGTTTTTGT 1023
|||||||||||||||||| || |||| | ||||||||||||| || ||| |||||||||
Sbjct 1035 TCTTGATTTGTAACATTAATCTTAAGACATATGTTAAGACAAAATGTTGTATGTTTTTGT 1094
Query 1024 AAAGAACTGTTTT--CAGATTATTGAACtttttttttGTC 1061
|||||| |||||| ||||||||| || ||||||||||||
Sbjct 1095 AAAGAATTGTTTTTTCAGATTATTTAAATTTTTTTTTGTC 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51957564075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5