BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489665 Length=3342 Score E Sequences producing significant alignments: (Bits) Value AT2G47430.1 | Symbols: CKI1 | Signal transduction histidine kin... 3542 0.0 > AT2G47430.1 | Symbols: CKI1 | Signal transduction histidine kinase | chr2:19459045-19464087 REVERSE LENGTH=3677 Length=3677 Score = 3542 bits (1918), Expect = 0.0 Identities = 2335/2539 (92%), Gaps = 18/2539 (1%) Strand=Plus/Plus Query 1 ATGGTGAACGTTAAAAAGCTTGTGGCTTCACGTCTAATTGTGGTCTTTGGCATCCTGGCA 60 |||||||| |||| |||||||||||||||||||| ||||||||||||| || |||||||| Sbjct 190 ATGGTGAAAGTTACAAAGCTTGTGGCTTCACGTCCAATTGTGGTCTTTTGCGTCCTGGCA 249 Query 61 TTTATGGTGGTTGTTTTCGGGTGCATATGGATTTCGAATTGGCGAACAACAACGAAGAGT 120 || ||||||||||||||| |||||| ||||| || |||||||||||||||||| ||| Sbjct 250 TTCCTGGTGGTTGTTTTCGAGTGCATTTGGATCTCAAATTGGCGAACAACAACGGAGAAC 309 Query 121 GTAG-CGAAAGACGTTGCTTCATTTACCGAAGATCTCCGGACAAGTCTAGTTTCCGAGAT 179 ||| | ||||| || |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 310 CTAGTC-AAAGAGGTCGCTTCATTTACCGAAGATCTCCGGACAAGTCTAGTTTCGGAGAT 368 Query 180 TCAAAACATTGGAAAATTTACATA-CCTCAAGACGAACTTATCTACAATCGGTTTAGCAA 238 | ||||||| |||||||||||||| | |||||| ||||||||||| ||||||||||| | Sbjct 369 TGAAAACATCGGAAAATTTACATATGC-CAAGACAAACTTATCTACGATCGGTTTAGCGA 427 Query 239 GAATGGTAGATTCTTATCTCACCAACAACGACACTGGTTTCACAGAGATTCAAACACAGA 298 || | ||||||||||| |||||||||||||||||||||| ||||||||||||||||||| Sbjct 428 GAGTTATAGATTCTTATATCACCAACAACGACACTGGTTTTACAGAGATTCAAACACAGA 487 Query 299 TCGCACCATTGTTGTTTGAAGCTTATTCAACGATCCCTCAAGTCTCACAAGTTTCGTACA 358 |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 488 TCGCACCATTGTTGTTTGTAGCTTATTCAACGATCCTTCAAGTCTCACAAGTTTCGTACA 547 Query 359 TTAGTAGGGACGGTCTCCTGTTTTCTTACATTGCAGAATCAAACACAAGTGTCGCTGTTT 418 | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 548 TCAGTAGGGACGGTCTCATGTTTTCTTACATTGCAGAATCAAACACAAGTGTCGCTGTTT 607 Query 419 TTGCCAATTCTTCGTCGACTTCAAGTGGTGGAGACTACACTTGGTACACTCAAACCGTTG 478 |||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| | Sbjct 608 TTGCCAATTCCTCGTCGAATTCAAGTCGTGGAGACTACACTTGGTACACTCAAACCGTGG 667 Query 479 ATCAGTTAACCGGTCGTCTCAACGGGAACGCAACAAAATCTCAGGCGTTAGATTTAACCC 538 |||||||||| |||||||| ||||||||| |||| ||||||||| |||||||| |||||| Sbjct 668 ATCAGTTAACTGGTCGTCTTAACGGGAACTCAACGAAATCTCAGTCGTTAGATGTAACCC 727 Query 539 ATACATATTGGATCCAAGCAGCACAGAGTAATAATTACACTACCGCCTTTCTAGGAACGA 598 ||||| ||||| |||||||||||||||||||||| |||||||| |||||| ||||||||| Sbjct 728 ATACAGATTGGTTCCAAGCAGCACAGAGTAATAACTACACTACAGCCTTTGTAGGAACGA 787 Query 599 GTTTGGGAGGAGAAGATAGCGAGACTCTAATTCAGAGCGTAGTTAGCTTGTACAGCAAGA 658 | |||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||| Sbjct 788 GCTTGGGAGGAGAAGATAACGAGACTCTAATACAGAGCGTGGTTAGCTTGTACAGCAAGA 847 Query 659 AAGGTCTTGTTTCGCTAGGGTTCCCGGTTAAGACTTTAACCGATGTTCTGAACAGATTGA 718 ||||||||||||| ||||||| |||||||||||||||||||| ||| ||||||| |||| Sbjct 848 AAGGTCTTGTTTCTTTAGGGTTTCCGGTTAAGACTTTAACCGAAGTTTTGAACAGTTTGA 907 Query 719 ATCTACACGGCGAAGAGCTTTACATGTGGACAAAGGATGGGACAGTGCTTGTTCGCGAAG 778 ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||| Sbjct 908 ATCTACACGGCGAAGAGCTTTACATGTGGACAAAGGACGGGACGGTGCTTGTTCGTGAAG 967 Query 779 GTTCATTGAATGCTTCTTTCTTCATCTCCAATGGCTCAATTTGTTTCGGTAGAGAATCGA 838 ||||| |||||| |||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 968 GTTCACTGAATGATTCTTTCTTCATCTCCAATGGCTCGATTTGCTTCGGTAGAGAATCGA 1027 Query 839 AATCCGTCTGGTCTCAATGCATCCCTGATAACTGCAGTTCTAGTGGTTACGAGGTGGAGA 898 | ||| |||||||||||||||||||||| || |||||||| ||||| ||||||||||||| Sbjct 1028 ACTCCCTCTGGTCTCAATGCATCCCTGAAAATTGCAGTTCCAGTGGCTACGAGGTGGAGA 1087 Query 899 TCAAAAGATCAACATTCCAAGCTTTTTGCTCTGTTCTTGAAGTTTCAGGCGTTCCTCTGA 958 ||||||||| || || ||||||||||||||||||| |||||||||| ||||||||||||| Sbjct 1088 TCAAAAGATTAAGATACCAAGCTTTTTGCTCTGTTATTGAAGTTTCGGGCGTTCCTCTGA 1147 Query 959 GATACACACTGATGTTTCCCAACAAAGGAGGAGCAACACGCATCAGGCACCAAGCGGAAA 1018 |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1148 GATACACACTCATGTTTCCCAACAAAGGAGGAGCAACACGCATCAAGCACCAAGCGGAAA 1207 Query 1019 AGGCAATGTATCAACTTATTGTGGTTACGATATTTCTTGGCTTGGGTTGGCCTTTATGGT 1078 |||||| ||||||||||||||||||| ||||||||||||||| ||||||||| |||||| Sbjct 1208 AGGCAAAATATCAACTTATTGTGGTTATGATATTTCTTGGCTTCGGTTGGCCTGTATGGT 1267 Query 1079 TCGTGTGGTTTATGATGCAAGCAACAAGGAAAGAGATGCATATGCGTGCAACGCTGATAA 1138 | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1268 TTGTGTGGTTTATGATGCAAGCAACAAGGAGAGAGATGCATATGCGTGCAACGCTGATAA 1327 Query 1139 ACCAAATGGAAGCAACACAACAGGCTGAGAGAAAGAGCATGAACAAGAGTCAAGCGTTTG 1198 ||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 1328 ACCAAATGGAAGCGACACAACAAGCTGAGAGAAAGAGCATGAACAAGAGTCAAGCATTTG 1387 Query 1199 CAAATGCTAGCCACGATATTAGAGGTGCCCTTGCTGGGATCAAAGGTCTAATTGATATAT 1258 |||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||| Sbjct 1388 CAAATGCTAGCCACGATATTAGAGGTGCCCTTGCAGGGATGAAAGGTCTGATTGATATAT 1447 Query 1259 GTTGTGATGAAGTTAAGCCTGGCTCTAATGTAGACACCACTCTCAAGCAAGTGAATGTTT 1318 || |||||| |||||| |||||||| | ||||||||||||||||| ||||||||||||| Sbjct 1448 GTCGTGATGGAGTTAAACCTGGCTCCGACGTAGACACCACTCTCAACCAAGTGAATGTTT 1507 Query 1319 GCTCCAAGGATTTGGTTGTTCTGCTCAACTCTGTTTTGGACATGAGCAAAATCGAAAGCG 1378 || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1508 GCGCCAAGGATTTGGTTGCTCTGCTCAACTCTGTTTTGGACATGAGCAAAATCGAAAGCG 1567 Query 1379 GGAAGATGCAATTAGTGGAAGAAGATTTCAACTTGGCAAAACTTCTTGAAGACGTCATCG 1438 |||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 1568 GGAAGATGCAGTTAGTGGAAGAAGATTTCAACTTGTCGAAACTTCTTGAAGACGTCATCG 1627 Query 1439 ACTTTTACCATCCTGTTGCGATGAAGAAAGGGGTTGATGTAGTTTTTGACCCACACGATG 1498 | ||||||||||| |||||||||||||||||||||||||||||||| || || ||||||| Sbjct 1628 ATTTTTACCATCCCGTTGCGATGAAGAAAGGGGTTGATGTAGTTTTGGATCCGCACGATG 1687 Query 1499 GCTCGATATTCAAATTCACGAATGTGCGAGGGGATAGTTGCAAACTGAAGCAGATTCTGA 1558 ||||| | ||||||||| ||||||| |||||||||||| ||| ||||||||||||||||| Sbjct 1688 GCTCGGTTTTCAAATTCTCGAATGTACGAGGGGATAGTGGCAGACTGAAGCAGATTCTGA 1747 Query 1559 ACAATCTTGTCAGTAATTCTGTCAAGTTCACAA-CGGACGGGCACATTTCGATCCGAGCT 1617 |||||||||| || ||| ||||||||||||| || ||||||||||| || | ||||| Sbjct 1748 ACAATCTTGTTAGCAATGCTGTCAAGTTCACCGTCG-ACGGGCACATTGCGGTAAGAGCT 1806 Query 1618 TGGGCTCAGAGGCCAGGTTCCAAAAGCTCTGTGGTCCTGGCATCAGA-CATTCAAGGTGT 1676 ||||||||||||||||||||||| |||||||||||||| |||||| | | | ||||||| Sbjct 1807 TGGGCTCAGAGGCCAGGTTCCAATAGCTCTGTGGTCCTTGCATCATATCCTA-AAGGTGT 1865 Query 1677 GTCTAAGATTT-TGAAGAGTATGTTCTGCAAGAATAAAGACCAGTCGTCAACTTACGAAA 1735 ||| ||| ||| | |||||||||||||||||||||||||| |||| ||||| ||||| | Sbjct 1866 GTCCAAG-TTTGTAAAGAGTATGTTCTGCAAGAATAAAGAAGAGTCATCAACCTACGAGA 1924 Query 1736 TAGAAATATCGAATTCCATAAGAAACAATGCCAACACGATGGAGTTTGTGTTTGAAGCGG 1795 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct 1925 CAGAAATATCGAATTCCATAAGAAACAATGCAAACACGATGGAGTTTGTGTTTGAAGTGG 1984 Query 1796 ACGATACAGGTAAAGGGATACCTATAGAGATGCGTAAATCGGTGTTTGAAAACTATATTC 1855 | ||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||| ||| Sbjct 1985 ATGATACTGGTAAAGGGATACCTATGGAGATGCGTAAGTCGGTATTTGAAAACTATGTTC 2044 Query 1856 AAGTAAGAGGAACAG-----G-ACACCAAGGAACTGGTTTGGGGCTTGGCATTGTACAGT 1909 ||||||||| ||||| | |||||||||||||||||| ||||| || ||||| |||| Sbjct 2045 AAGTAAGAGAAACAGCTCAAGGACACCAAGGAACTGGTTTAGGGCTCGGGATTGTGCAGT 2104 Query 1910 CTTTGGTAAGATTAATGGGAGGGGAGATAAGAATCACCGACAAGGCCATGGGAGAGAAAG 1969 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2105 CTTTGGTAAGATTAATGGGAGGGGAGATAAGAATCACCGACAAGGCCATGGGAGAGAAAG 2164 Query 1970 GAACATGTTTCGAATTCAATGTTTTATTGACAACATTAGAGTCTCCTCCAATGAATAACA 2029 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||| | ||| Sbjct 2165 GAACATGTTTCCAATTCAATGTTTTATTGACAACATTAGAGTCTCCTCCAGTGAGTGACA 2224 Query 2030 TGAAAGTAAAACAGGACATCGAAGCAGGAGGTGATTACGTATCCACGCCAAACCTCGGAC 2089 ||||||| | |||||| |||||||||||||| ||||| |||||||||||||||||||| | Sbjct 2225 TGAAAGTGAGACAGGAGATCGAAGCAGGAGGCGATTATGTATCCACGCCAAACCTCGGGC 2284 Query 2090 TGACTATAAACACTTCACTGGGAGGTAGCATGAATCTACGCAACCTAAGTCCTAAATTCA 2149 ||||||||||||||||||| ||||||||||||||| |||| ||||| ||||||| ||||| Sbjct 2285 TGACTATAAACACTTCACTTGGAGGTAGCATGAATATACGTAACCTGAGTCCTAGATTCA 2344 Query 2150 ACAACTGTCTTAGCTCAAGTCCAAAGCAAGAATGGT-CTAGAGTGGTTCTCCTATTGAAA 2208 |||||||||| ||||||||||||||||||||| ||| ||||||||||||| ||||||||| Sbjct 2345 ACAACTGTCTCAGCTCAAGTCCAAAGCAAGAA-GGTTCTAGAGTGGTTCTTCTATTGAAA 2403 Query 2209 AGCGAAGAACGCAGAAGAGTTACCGAGAAATACATAAAGAATGTTGGGATTAAAGTTTCA 2268 | |||||||||||||||||||| |||||||||||||||||| |||||||||||||| || Sbjct 2404 AATGAAGAACGCAGAAGAGTTACAGAGAAATACATAAAGAATCTTGGGATTAAAGTTACA 2463 Query 2269 GTGGTGGAGAAATGGGAGCATTTGAGTTATGCCTTGGAGAGACTTTTTGGATTTTCACCT 2328 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2464 GTGGTGGAGAAATGGGAGCATTTGAGTTATGCTTTGGAGAGACTTTTTGGATTTTCACCT 2523 Query 2329 CAGAGTTCCATGGGAAGAGCAGAGTGTAGCTTGTCATGTTCGAGCTCAAGGAAGTTACCA 2388 ||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||| Sbjct 2524 CAGAGTTCCATGGGAAGAGCAGAGTGTAGTTTGTCATGTCCGAGCTCAAGGGAGTTACCT 2583 Query 2389 TTGATTGGCATGGATGGTATTGATTCAAGAAGCCAACTTCCTAAAAGGAGAAGAAACAGT 2448 || ||||||||||| |||||||||||||||||||||||||||||||||||||| | |||| Sbjct 2584 TTCATTGGCATGGACGGTATTGATTCAAGAAGCCAACTTCCTAAAAGGAGAAGCATCAGT 2643 Query 2449 TTCCCTGCACTTGTCCTTCTGGTGATTGATGCAAAAACTGGACCATTTTTTGAGCTGTAC 2508 ||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| | Sbjct 2644 TTCTCTGCAGTTGTCCTTTTGGTGATTGATGCAAAAACTGGACCATTTTTTGAGCTGTGC 2703 Query 2509 GATACTGTCAAACAATTTC 2527 |||| ||||||||| |||| Sbjct 2704 GATATTGTCAAACAGTTTC 2722 Score = 1088 bits (589), Expect = 0.0 Identities = 732/800 (92%), Gaps = 14/800 (2%) Strand=Plus/Plus Query 2528 TTGTTTGGCTAAACGAATCGAGCACTCATGTAAGTGAAAGAGGGGACATTAGTTGTT-GT 2586 |||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||| | Sbjct 2756 TTGTTTGGCTTAACGAATCGAGCACTCGTGTAAGTGAGAGAGGGGACATTAGTTGTTCG- 2814 Query 2587 AGACCCTTGCACGGATCGCGTCTTATGGAAGTCTTGAAGATGTTACCTGAATTTGGAGGA 2646 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 2815 AGACCTTTGCACGGATCGCGTCTTATGGAAGTCTTGAAGATGTTGCCTGAATTTGGAGGA 2874 Query 2647 ACTCTGCTAAGAGAAACACCAACTGAGCTGCAAAGAGAATCACCACTGAGATATTCTTTT 2706 ||| |||||| |||| |||| |||||||||||||| |||||| |||||| |||||||| Sbjct 2875 ACTGTGCTAAAAGAACCACCTACTGAGCTGCAAAGGGAATCATTGCTGAGACATTCTTTT 2934 Query 2707 GTTGCAGAGAGATCACTAAAACATAAATTCCAAGAAGAGGGACTAAGCTCATTAAGGTTT 2766 |||||||||||||||| |||||||||| ||||||||||||| | |||||| || |||| Sbjct 2935 GTTGCAGAGAGATCACCAAAACATAAAGTCCAAGAAGAGGGGCCAAGCTC---AATGTTT 2991 Query 2767 AACAAAAAATTAGGCAAGACGTTAATGGCACCAACATCTTCAGAGAGTGAGACTTCGGTC 2826 |||||||||||||| |||| | |||||||| ||||| |||||||||||||||| |||| Sbjct 2992 AACAAAAAATTAGGTAAGAGGATAATGGCATCAACAGATTCAGAGAGTGAGACTAGGGTC 3051 Query 2827 AAGTTACTGCGTATAGGTGGGAATCCTATTGGGAACCTAGAGGACGAGCAAGGA-ACTTC 2885 |||| | |||||| ||| | || ||||||||||||| ||||||||||||| || ||||| Sbjct 3052 AAGTCAGTGCGTACCGGTCGAAAGCCTATTGGGAACCCAGAGGACGAGCAA-GAGACTTC 3110 Query 2886 CAAGCCGAGTGACGATGAGTTCTTAAGA-GAGAAGAGAGTTCTTGTGGTCGATGATAACT 2944 |||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||| Sbjct 3111 CAAGCCGAGTGACGATGAATTCTTAAGAGGA-AAGAGAGTTCTTGTGGTCGATGATAACT 3169 Query 2945 TTTTAACACGTAAAGTTGCAATAGGAAAGCTAAAGAAGATGGGAGTCTCCGAGGTCAAAC 3004 || || ||||||||||||||| ||||||||| ||||||||||||||||| |||||| ||| Sbjct 3170 TTATATCACGTAAAGTTGCAACAGGAAAGCTGAAGAAGATGGGAGTCTCAGAGGTCGAAC 3229 Query 3005 AATGTGACAATGGAAAAGAAGCTTTGAGATTAGTCACTGAAGGGCTTACACAAAGAAGAG 3064 |||| |||| ||| ||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 3230 AATGCGACAGTGGGAAAGAAGCTTTGAGATTAGTCACTGAAGGGCTTACAC--A-AAGAG 3286 Query 3065 AAGAACAAGGTTCAGTAGATAACCTTCCGTTTGACTACATATTCATGGACTGCCAAATGC 3124 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 3287 AAGAACAAGGTTCAGTAGATAAACTTCCGTTTGACTACATATTCATGGACTGCCAAATGC 3346 Query 3125 CAGATATGGATGGATATGAAGCAACTAAAGAGATTAGGAAAGTGGAGAAAAGTTATGGGG 3184 |||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 3347 CAGAAATGGATGGCTATGAAGCAACTAGAGAGATTAGGAAAGTGGAGAAAAGTTATGGGG 3406 Query 3185 TGCGTATACCAATTATAGCTGTATCTGGTCATGATCCTGGTTCAAG-GGAAGCAAGAGAA 3243 |||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 3407 TGCGTACACCAATTATAGCTGTATCTGGTCATGATCCTGGTTC-AGAGGAAGCAAGAGAA 3465 Query 3244 ACCATTCAAGCTGGAATGGACGCCTTCTTAGATAAAAATTTGAATCAACTTGCAAATGTC 3303 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 3466 ACCATTCAAGCTGGAATGGACGCCTTCTTAGATAAAAGCTTGAATCAACTTGCAAACGTC 3525 Query 3304 ATTAGAGATATCGAAAGCAA 3323 |||||||| ||||||||||| Sbjct 3526 ATTAGAGAAATCGAAAGCAA 3545 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 166303416045 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5