BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489665
Length=3342
Score E
Sequences producing significant alignments: (Bits) Value
AT2G47430.1 | Symbols: CKI1 | Signal transduction histidine kin... 3542 0.0
> AT2G47430.1 | Symbols: CKI1 | Signal transduction histidine kinase
| chr2:19459045-19464087 REVERSE LENGTH=3677
Length=3677
Score = 3542 bits (1918), Expect = 0.0
Identities = 2335/2539 (92%), Gaps = 18/2539 (1%)
Strand=Plus/Plus
Query 1 ATGGTGAACGTTAAAAAGCTTGTGGCTTCACGTCTAATTGTGGTCTTTGGCATCCTGGCA 60
|||||||| |||| |||||||||||||||||||| ||||||||||||| || ||||||||
Sbjct 190 ATGGTGAAAGTTACAAAGCTTGTGGCTTCACGTCCAATTGTGGTCTTTTGCGTCCTGGCA 249
Query 61 TTTATGGTGGTTGTTTTCGGGTGCATATGGATTTCGAATTGGCGAACAACAACGAAGAGT 120
|| ||||||||||||||| |||||| ||||| || |||||||||||||||||| |||
Sbjct 250 TTCCTGGTGGTTGTTTTCGAGTGCATTTGGATCTCAAATTGGCGAACAACAACGGAGAAC 309
Query 121 GTAG-CGAAAGACGTTGCTTCATTTACCGAAGATCTCCGGACAAGTCTAGTTTCCGAGAT 179
||| | ||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 310 CTAGTC-AAAGAGGTCGCTTCATTTACCGAAGATCTCCGGACAAGTCTAGTTTCGGAGAT 368
Query 180 TCAAAACATTGGAAAATTTACATA-CCTCAAGACGAACTTATCTACAATCGGTTTAGCAA 238
| ||||||| |||||||||||||| | |||||| ||||||||||| ||||||||||| |
Sbjct 369 TGAAAACATCGGAAAATTTACATATGC-CAAGACAAACTTATCTACGATCGGTTTAGCGA 427
Query 239 GAATGGTAGATTCTTATCTCACCAACAACGACACTGGTTTCACAGAGATTCAAACACAGA 298
|| | ||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 428 GAGTTATAGATTCTTATATCACCAACAACGACACTGGTTTTACAGAGATTCAAACACAGA 487
Query 299 TCGCACCATTGTTGTTTGAAGCTTATTCAACGATCCCTCAAGTCTCACAAGTTTCGTACA 358
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 488 TCGCACCATTGTTGTTTGTAGCTTATTCAACGATCCTTCAAGTCTCACAAGTTTCGTACA 547
Query 359 TTAGTAGGGACGGTCTCCTGTTTTCTTACATTGCAGAATCAAACACAAGTGTCGCTGTTT 418
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 TCAGTAGGGACGGTCTCATGTTTTCTTACATTGCAGAATCAAACACAAGTGTCGCTGTTT 607
Query 419 TTGCCAATTCTTCGTCGACTTCAAGTGGTGGAGACTACACTTGGTACACTCAAACCGTTG 478
|||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| |
Sbjct 608 TTGCCAATTCCTCGTCGAATTCAAGTCGTGGAGACTACACTTGGTACACTCAAACCGTGG 667
Query 479 ATCAGTTAACCGGTCGTCTCAACGGGAACGCAACAAAATCTCAGGCGTTAGATTTAACCC 538
|||||||||| |||||||| ||||||||| |||| ||||||||| |||||||| ||||||
Sbjct 668 ATCAGTTAACTGGTCGTCTTAACGGGAACTCAACGAAATCTCAGTCGTTAGATGTAACCC 727
Query 539 ATACATATTGGATCCAAGCAGCACAGAGTAATAATTACACTACCGCCTTTCTAGGAACGA 598
||||| ||||| |||||||||||||||||||||| |||||||| |||||| |||||||||
Sbjct 728 ATACAGATTGGTTCCAAGCAGCACAGAGTAATAACTACACTACAGCCTTTGTAGGAACGA 787
Query 599 GTTTGGGAGGAGAAGATAGCGAGACTCTAATTCAGAGCGTAGTTAGCTTGTACAGCAAGA 658
| |||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||
Sbjct 788 GCTTGGGAGGAGAAGATAACGAGACTCTAATACAGAGCGTGGTTAGCTTGTACAGCAAGA 847
Query 659 AAGGTCTTGTTTCGCTAGGGTTCCCGGTTAAGACTTTAACCGATGTTCTGAACAGATTGA 718
||||||||||||| ||||||| |||||||||||||||||||| ||| ||||||| ||||
Sbjct 848 AAGGTCTTGTTTCTTTAGGGTTTCCGGTTAAGACTTTAACCGAAGTTTTGAACAGTTTGA 907
Query 719 ATCTACACGGCGAAGAGCTTTACATGTGGACAAAGGATGGGACAGTGCTTGTTCGCGAAG 778
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 908 ATCTACACGGCGAAGAGCTTTACATGTGGACAAAGGACGGGACGGTGCTTGTTCGTGAAG 967
Query 779 GTTCATTGAATGCTTCTTTCTTCATCTCCAATGGCTCAATTTGTTTCGGTAGAGAATCGA 838
||||| |||||| |||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 968 GTTCACTGAATGATTCTTTCTTCATCTCCAATGGCTCGATTTGCTTCGGTAGAGAATCGA 1027
Query 839 AATCCGTCTGGTCTCAATGCATCCCTGATAACTGCAGTTCTAGTGGTTACGAGGTGGAGA 898
| ||| |||||||||||||||||||||| || |||||||| ||||| |||||||||||||
Sbjct 1028 ACTCCCTCTGGTCTCAATGCATCCCTGAAAATTGCAGTTCCAGTGGCTACGAGGTGGAGA 1087
Query 899 TCAAAAGATCAACATTCCAAGCTTTTTGCTCTGTTCTTGAAGTTTCAGGCGTTCCTCTGA 958
||||||||| || || ||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 1088 TCAAAAGATTAAGATACCAAGCTTTTTGCTCTGTTATTGAAGTTTCGGGCGTTCCTCTGA 1147
Query 959 GATACACACTGATGTTTCCCAACAAAGGAGGAGCAACACGCATCAGGCACCAAGCGGAAA 1018
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1148 GATACACACTCATGTTTCCCAACAAAGGAGGAGCAACACGCATCAAGCACCAAGCGGAAA 1207
Query 1019 AGGCAATGTATCAACTTATTGTGGTTACGATATTTCTTGGCTTGGGTTGGCCTTTATGGT 1078
|||||| ||||||||||||||||||| ||||||||||||||| ||||||||| ||||||
Sbjct 1208 AGGCAAAATATCAACTTATTGTGGTTATGATATTTCTTGGCTTCGGTTGGCCTGTATGGT 1267
Query 1079 TCGTGTGGTTTATGATGCAAGCAACAAGGAAAGAGATGCATATGCGTGCAACGCTGATAA 1138
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1268 TTGTGTGGTTTATGATGCAAGCAACAAGGAGAGAGATGCATATGCGTGCAACGCTGATAA 1327
Query 1139 ACCAAATGGAAGCAACACAACAGGCTGAGAGAAAGAGCATGAACAAGAGTCAAGCGTTTG 1198
||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1328 ACCAAATGGAAGCGACACAACAAGCTGAGAGAAAGAGCATGAACAAGAGTCAAGCATTTG 1387
Query 1199 CAAATGCTAGCCACGATATTAGAGGTGCCCTTGCTGGGATCAAAGGTCTAATTGATATAT 1258
|||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 1388 CAAATGCTAGCCACGATATTAGAGGTGCCCTTGCAGGGATGAAAGGTCTGATTGATATAT 1447
Query 1259 GTTGTGATGAAGTTAAGCCTGGCTCTAATGTAGACACCACTCTCAAGCAAGTGAATGTTT 1318
|| |||||| |||||| |||||||| | ||||||||||||||||| |||||||||||||
Sbjct 1448 GTCGTGATGGAGTTAAACCTGGCTCCGACGTAGACACCACTCTCAACCAAGTGAATGTTT 1507
Query 1319 GCTCCAAGGATTTGGTTGTTCTGCTCAACTCTGTTTTGGACATGAGCAAAATCGAAAGCG 1378
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1508 GCGCCAAGGATTTGGTTGCTCTGCTCAACTCTGTTTTGGACATGAGCAAAATCGAAAGCG 1567
Query 1379 GGAAGATGCAATTAGTGGAAGAAGATTTCAACTTGGCAAAACTTCTTGAAGACGTCATCG 1438
|||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1568 GGAAGATGCAGTTAGTGGAAGAAGATTTCAACTTGTCGAAACTTCTTGAAGACGTCATCG 1627
Query 1439 ACTTTTACCATCCTGTTGCGATGAAGAAAGGGGTTGATGTAGTTTTTGACCCACACGATG 1498
| ||||||||||| |||||||||||||||||||||||||||||||| || || |||||||
Sbjct 1628 ATTTTTACCATCCCGTTGCGATGAAGAAAGGGGTTGATGTAGTTTTGGATCCGCACGATG 1687
Query 1499 GCTCGATATTCAAATTCACGAATGTGCGAGGGGATAGTTGCAAACTGAAGCAGATTCTGA 1558
||||| | ||||||||| ||||||| |||||||||||| ||| |||||||||||||||||
Sbjct 1688 GCTCGGTTTTCAAATTCTCGAATGTACGAGGGGATAGTGGCAGACTGAAGCAGATTCTGA 1747
Query 1559 ACAATCTTGTCAGTAATTCTGTCAAGTTCACAA-CGGACGGGCACATTTCGATCCGAGCT 1617
|||||||||| || ||| ||||||||||||| || ||||||||||| || | |||||
Sbjct 1748 ACAATCTTGTTAGCAATGCTGTCAAGTTCACCGTCG-ACGGGCACATTGCGGTAAGAGCT 1806
Query 1618 TGGGCTCAGAGGCCAGGTTCCAAAAGCTCTGTGGTCCTGGCATCAGA-CATTCAAGGTGT 1676
||||||||||||||||||||||| |||||||||||||| |||||| | | | |||||||
Sbjct 1807 TGGGCTCAGAGGCCAGGTTCCAATAGCTCTGTGGTCCTTGCATCATATCCTA-AAGGTGT 1865
Query 1677 GTCTAAGATTT-TGAAGAGTATGTTCTGCAAGAATAAAGACCAGTCGTCAACTTACGAAA 1735
||| ||| ||| | |||||||||||||||||||||||||| |||| ||||| ||||| |
Sbjct 1866 GTCCAAG-TTTGTAAAGAGTATGTTCTGCAAGAATAAAGAAGAGTCATCAACCTACGAGA 1924
Query 1736 TAGAAATATCGAATTCCATAAGAAACAATGCCAACACGATGGAGTTTGTGTTTGAAGCGG 1795
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 1925 CAGAAATATCGAATTCCATAAGAAACAATGCAAACACGATGGAGTTTGTGTTTGAAGTGG 1984
Query 1796 ACGATACAGGTAAAGGGATACCTATAGAGATGCGTAAATCGGTGTTTGAAAACTATATTC 1855
| ||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||| |||
Sbjct 1985 ATGATACTGGTAAAGGGATACCTATGGAGATGCGTAAGTCGGTATTTGAAAACTATGTTC 2044
Query 1856 AAGTAAGAGGAACAG-----G-ACACCAAGGAACTGGTTTGGGGCTTGGCATTGTACAGT 1909
||||||||| ||||| | |||||||||||||||||| ||||| || ||||| ||||
Sbjct 2045 AAGTAAGAGAAACAGCTCAAGGACACCAAGGAACTGGTTTAGGGCTCGGGATTGTGCAGT 2104
Query 1910 CTTTGGTAAGATTAATGGGAGGGGAGATAAGAATCACCGACAAGGCCATGGGAGAGAAAG 1969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2105 CTTTGGTAAGATTAATGGGAGGGGAGATAAGAATCACCGACAAGGCCATGGGAGAGAAAG 2164
Query 1970 GAACATGTTTCGAATTCAATGTTTTATTGACAACATTAGAGTCTCCTCCAATGAATAACA 2029
||||||||||| |||||||||||||||||||||||||||||||||||||| ||| | |||
Sbjct 2165 GAACATGTTTCCAATTCAATGTTTTATTGACAACATTAGAGTCTCCTCCAGTGAGTGACA 2224
Query 2030 TGAAAGTAAAACAGGACATCGAAGCAGGAGGTGATTACGTATCCACGCCAAACCTCGGAC 2089
||||||| | |||||| |||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 2225 TGAAAGTGAGACAGGAGATCGAAGCAGGAGGCGATTATGTATCCACGCCAAACCTCGGGC 2284
Query 2090 TGACTATAAACACTTCACTGGGAGGTAGCATGAATCTACGCAACCTAAGTCCTAAATTCA 2149
||||||||||||||||||| ||||||||||||||| |||| ||||| ||||||| |||||
Sbjct 2285 TGACTATAAACACTTCACTTGGAGGTAGCATGAATATACGTAACCTGAGTCCTAGATTCA 2344
Query 2150 ACAACTGTCTTAGCTCAAGTCCAAAGCAAGAATGGT-CTAGAGTGGTTCTCCTATTGAAA 2208
|||||||||| ||||||||||||||||||||| ||| ||||||||||||| |||||||||
Sbjct 2345 ACAACTGTCTCAGCTCAAGTCCAAAGCAAGAA-GGTTCTAGAGTGGTTCTTCTATTGAAA 2403
Query 2209 AGCGAAGAACGCAGAAGAGTTACCGAGAAATACATAAAGAATGTTGGGATTAAAGTTTCA 2268
| |||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||
Sbjct 2404 AATGAAGAACGCAGAAGAGTTACAGAGAAATACATAAAGAATCTTGGGATTAAAGTTACA 2463
Query 2269 GTGGTGGAGAAATGGGAGCATTTGAGTTATGCCTTGGAGAGACTTTTTGGATTTTCACCT 2328
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2464 GTGGTGGAGAAATGGGAGCATTTGAGTTATGCTTTGGAGAGACTTTTTGGATTTTCACCT 2523
Query 2329 CAGAGTTCCATGGGAAGAGCAGAGTGTAGCTTGTCATGTTCGAGCTCAAGGAAGTTACCA 2388
||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||
Sbjct 2524 CAGAGTTCCATGGGAAGAGCAGAGTGTAGTTTGTCATGTCCGAGCTCAAGGGAGTTACCT 2583
Query 2389 TTGATTGGCATGGATGGTATTGATTCAAGAAGCCAACTTCCTAAAAGGAGAAGAAACAGT 2448
|| ||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 2584 TTCATTGGCATGGACGGTATTGATTCAAGAAGCCAACTTCCTAAAAGGAGAAGCATCAGT 2643
Query 2449 TTCCCTGCACTTGTCCTTCTGGTGATTGATGCAAAAACTGGACCATTTTTTGAGCTGTAC 2508
||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 2644 TTCTCTGCAGTTGTCCTTTTGGTGATTGATGCAAAAACTGGACCATTTTTTGAGCTGTGC 2703
Query 2509 GATACTGTCAAACAATTTC 2527
|||| ||||||||| ||||
Sbjct 2704 GATATTGTCAAACAGTTTC 2722
Score = 1088 bits (589), Expect = 0.0
Identities = 732/800 (92%), Gaps = 14/800 (2%)
Strand=Plus/Plus
Query 2528 TTGTTTGGCTAAACGAATCGAGCACTCATGTAAGTGAAAGAGGGGACATTAGTTGTT-GT 2586
|||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||| |
Sbjct 2756 TTGTTTGGCTTAACGAATCGAGCACTCGTGTAAGTGAGAGAGGGGACATTAGTTGTTCG- 2814
Query 2587 AGACCCTTGCACGGATCGCGTCTTATGGAAGTCTTGAAGATGTTACCTGAATTTGGAGGA 2646
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2815 AGACCTTTGCACGGATCGCGTCTTATGGAAGTCTTGAAGATGTTGCCTGAATTTGGAGGA 2874
Query 2647 ACTCTGCTAAGAGAAACACCAACTGAGCTGCAAAGAGAATCACCACTGAGATATTCTTTT 2706
||| |||||| |||| |||| |||||||||||||| |||||| |||||| ||||||||
Sbjct 2875 ACTGTGCTAAAAGAACCACCTACTGAGCTGCAAAGGGAATCATTGCTGAGACATTCTTTT 2934
Query 2707 GTTGCAGAGAGATCACTAAAACATAAATTCCAAGAAGAGGGACTAAGCTCATTAAGGTTT 2766
|||||||||||||||| |||||||||| ||||||||||||| | |||||| || ||||
Sbjct 2935 GTTGCAGAGAGATCACCAAAACATAAAGTCCAAGAAGAGGGGCCAAGCTC---AATGTTT 2991
Query 2767 AACAAAAAATTAGGCAAGACGTTAATGGCACCAACATCTTCAGAGAGTGAGACTTCGGTC 2826
|||||||||||||| |||| | |||||||| ||||| |||||||||||||||| ||||
Sbjct 2992 AACAAAAAATTAGGTAAGAGGATAATGGCATCAACAGATTCAGAGAGTGAGACTAGGGTC 3051
Query 2827 AAGTTACTGCGTATAGGTGGGAATCCTATTGGGAACCTAGAGGACGAGCAAGGA-ACTTC 2885
|||| | |||||| ||| | || ||||||||||||| ||||||||||||| || |||||
Sbjct 3052 AAGTCAGTGCGTACCGGTCGAAAGCCTATTGGGAACCCAGAGGACGAGCAA-GAGACTTC 3110
Query 2886 CAAGCCGAGTGACGATGAGTTCTTAAGA-GAGAAGAGAGTTCTTGTGGTCGATGATAACT 2944
|||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||
Sbjct 3111 CAAGCCGAGTGACGATGAATTCTTAAGAGGA-AAGAGAGTTCTTGTGGTCGATGATAACT 3169
Query 2945 TTTTAACACGTAAAGTTGCAATAGGAAAGCTAAAGAAGATGGGAGTCTCCGAGGTCAAAC 3004
|| || ||||||||||||||| ||||||||| ||||||||||||||||| |||||| |||
Sbjct 3170 TTATATCACGTAAAGTTGCAACAGGAAAGCTGAAGAAGATGGGAGTCTCAGAGGTCGAAC 3229
Query 3005 AATGTGACAATGGAAAAGAAGCTTTGAGATTAGTCACTGAAGGGCTTACACAAAGAAGAG 3064
|||| |||| ||| ||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 3230 AATGCGACAGTGGGAAAGAAGCTTTGAGATTAGTCACTGAAGGGCTTACAC--A-AAGAG 3286
Query 3065 AAGAACAAGGTTCAGTAGATAACCTTCCGTTTGACTACATATTCATGGACTGCCAAATGC 3124
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3287 AAGAACAAGGTTCAGTAGATAAACTTCCGTTTGACTACATATTCATGGACTGCCAAATGC 3346
Query 3125 CAGATATGGATGGATATGAAGCAACTAAAGAGATTAGGAAAGTGGAGAAAAGTTATGGGG 3184
|||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3347 CAGAAATGGATGGCTATGAAGCAACTAGAGAGATTAGGAAAGTGGAGAAAAGTTATGGGG 3406
Query 3185 TGCGTATACCAATTATAGCTGTATCTGGTCATGATCCTGGTTCAAG-GGAAGCAAGAGAA 3243
|||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 3407 TGCGTACACCAATTATAGCTGTATCTGGTCATGATCCTGGTTC-AGAGGAAGCAAGAGAA 3465
Query 3244 ACCATTCAAGCTGGAATGGACGCCTTCTTAGATAAAAATTTGAATCAACTTGCAAATGTC 3303
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 3466 ACCATTCAAGCTGGAATGGACGCCTTCTTAGATAAAAGCTTGAATCAACTTGCAAACGTC 3525
Query 3304 ATTAGAGATATCGAAAGCAA 3323
|||||||| |||||||||||
Sbjct 3526 ATTAGAGAAATCGAAAGCAA 3545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 166303416045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5