BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489666
Length=1541
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28840.1 | Symbols: GME | GDP-D-mannose 3',5'-epimerase | ch... 1853 0.0
> AT5G28840.1 | Symbols: GME | GDP-D-mannose 3',5'-epimerase |
chr5:10862173-10864903 REVERSE LENGTH=1612
Length=1612
Score = 1853 bits (1003), Expect = 0.0
Identities = 1139/1207 (94%), Gaps = 0/1207 (0%)
Strand=Plus/Plus
Query 85 CTCTGACCCTTCTCTGCATTATCTCTTCGATCTCTCCAACTCTCGAAAACCTTTCTCAGA 144
||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 120 CTCTGACTCTTCTCTGCATTATCTCTTCGATCTCTCCAACTCTCCAAAACCTTCCTCAGA 179
Query 145 ATGGGAACTACCAATGGAAGTGATTATGGTGCTTACACATACAAGGAGCTAGAAAGAGAG 204
||||||||||||||||||| || ||||| || |||||||||||||||||||||||||||
Sbjct 180 ATGGGAACTACCAATGGAACAGACTATGGAGCATACACATACAAGGAGCTAGAAAGAGAG 239
Query 205 CCTTATTGGCCATCTGAGAAGCTCAAGATATCGATTACCGGCGCTGGAGGTTTCATTGCG 264
| ||||||||||||||||| ||||||||||| || || || |||||||||||||||||
Sbjct 240 CAATATTGGCCATCTGAGAATCTCAAGATATCAATAACAGGAGCTGGAGGTTTCATTGCA 299
Query 265 TCTCACATTGCTCGTCGTTTGAAGCACGAAGGTCATTACGTGATTGCTTCTGACTGGAAG 324
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCTCACATTGCTCGTCGTTTGAAGCACGAAGGTCATTACGTGATTGCTTCTGACTGGAAA 359
Query 325 AAGAATGAGCATATGACTGAAGACATGTTCTGTGATGAATTCCATCTTGTTGATCTTAGG 384
|||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 360 AAGAATGAACACATGACTGAAGACATGTTCTGTGATGAGTTCCATCTTGTTGATCTTAGG 419
Query 385 GTTATGGAGAATTGTCTCAAGGTTACTAAAGGAGTTGATCATGTTTTTAACTTAGCTGCT 444
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 420 GTTATGGAGAATTGTCTCAAAGTTACTGAAGGAGTTGATCATGTTTTTAACTTAGCTGCT 479
Query 445 GATATGGGTGGTATGGGTTTCATTCAGTCTAACCATTCGGTGATCATGTATAACAATACT 504
|||||||||||||||||||| || ||| ||| || || ||||| |||||||| ||||||
Sbjct 480 GATATGGGTGGTATGGGTTTTATCCAGAGTAATCACTCTGTGATTATGTATAATAATACT 539
Query 505 ATGATTAGTTTCAATATGATCGAGGCGGCTAGGATCAATGGGATTAAGAGGTTCTTCTAT 564
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 540 ATGATTAGTTTCAATATGATTGAGGCTGCTAGGATCAATGGGATTAAGAGGTTCTTTTAT 599
Query 565 GCTTCTAGTGCTTGTATTTACCCGGAGTTCAAGCAGTTGGAGACTACTAATGTGAGCCTG 624
||||| ||||||||||| || || ||||| ||||||||||||||||||||||||||| ||
Sbjct 600 GCTTCGAGTGCTTGTATCTATCCAGAGTTTAAGCAGTTGGAGACTACTAATGTGAGCTTG 659
Query 625 AAGGAGTCAGATGCTTGGCCTGCAGAGCCTCAAGATGCTTATGGTTTGGAGAAACTTGCA 684
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 660 AAGGAGTCAGATGCTTGGCCTGCAGAGCCTCAAGATGCTTATGGTTTGGAGAAGCTTGCT 719
Query 685 ACGGAGGAGTTGTGCAAGCATTACAACAAAGATTTTGGAATTGAGTGCCGCATTGGAAGG 744
|||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 720 ACGGAGGAGTTGTGTAAGCATTACAACAAAGATTTTGGTATTGAGTGTCGAATTGGAAGG 779
Query 745 TTCCATAACATTTATGGTCCATTTGGAACATGGAAAGGTGGAAGGGAGAAGGCTCCAGCT 804
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTCCATAACATTTATGGTCCTTTTGGAACATGGAAAGGTGGAAGGGAGAAGGCTCCAGCT 839
Query 805 GCTTTCTGTAGAAAGGCTCTCACCTCCACAGATAGGTTTGAGATGTGGGGAGACGGGCTA 864
||||||||||| ||||||| || ||||| ||||||||||||||||||||||| |||||
Sbjct 840 GCTTTCTGTAGGAAGGCTCAGACTTCCACTGATAGGTTTGAGATGTGGGGAGATGGGCTT 899
Query 865 CAAACCCGTTCTTTTACCTTCATCGATGAGTGCGTTGAAGGTGTACTCAGGTTGACAAAA 924
|| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 900 CAGACCCGTTCTTTTACCTTTATCGATGAGTGTGTTGAAGGTGTACTCAGGTTGACAAAA 959
Query 925 TCTGATTTCCGTGAGCCGGTGAACATTGGAAGCGATGAGATGGTGAGCATGAATGAGATG 984
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 960 TCAGATTTCCGTGAGCCGGTGAACATCGGAAGCGATGAGATGGTGAGCATGAATGAGATG 1019
Query 985 GCTGAGATGGTTCTCAGCTTTGAGGAGAAGAAGCTTCCAATTCACCACATTCCAGGCCCA 1044
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1020 GCTGAGATGGTTCTCAGCTTTGAGGAAAAGAAGCTTCCAATTCACCACATTCCTGGCCCG 1079
Query 1045 GAAGGTGTTCGTGGTCGTAACTCAGACAACAATCTGATCAAAGAAAAGCTTGGTTGGGCT 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GAAGGTGTTCGTGGTCGTAACTCAGACAACAATCTGATCAAAGAAAAGCTTGGTTGGGCT 1139
Query 1105 CCAAATATGAGATTGAAGGAGGGGCTTAGAATAACCTACTTCTGGATAAAGGAACAGATC 1164
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CCTAATATGAGATTGAAGGAGGGGCTTAGAATAACCTACTTCTGGATAAAGGAACAGATC 1199
Query 1165 GAGAAAGAGAAAGCAAAAGGAAGCGATGTGTCCCTTTACGGGTCATCAAAGGTGGTTGGA 1224
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1200 GAGAAAGAGAAAGCAAAGGGAAGCGATGTGTCGCTTTACGGGTCATCAAAGGTGGTTGGA 1259
Query 1225 ACTCAAGCGCCGGTTCAGCTAGGCTCACTCCGCGCAGCTGATGGAAAAGAGTGAATTTCA 1284
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1260 ACTCAAGCACCGGTTCAGCTAGGCTCACTCCGCGCGGCTGATGGAAAAGAGTGAAGTTCA 1319
Query 1285 CCAAAGT 1291
|||||||
Sbjct 1320 CCAAAGT 1326
Score = 311 bits (168), Expect = 1e-83
Identities = 234/263 (89%), Gaps = 15/263 (6%)
Strand=Plus/Plus
Query 1288 AAGTTCAGCAAAATGTTTAGATATATGTTTAGGTAGCTTCCTATT-AAAAAGCTATAATA 1346
|||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||
Sbjct 1354 AAGTTCAGCAAAATGTTTAGATATATTTTTAGGTAGCTTCCTATTAAAAAAGCAATAATA 1413
Query 1347 AGTGTTTTGGATTTTGGTTCCTTCTCTTCTGCTAATTCTTGTTTATGTTTACTTGGAAAA 1406
||||||||||||||||||||||||| |||||||||| |||||||||||||| ||| ||||
Sbjct 1414 AGTGTTTTGGATTTTGGTTCCTTCTATTCTGCTAATCCTTGTTTATGTTTAGTTGAAAAA 1473
Query 1407 GTTTGC----ATTGTTAAGTCAATTATACGATGTGTTATTGTGGTCCTTTCA--CA--GT 1458
|||||| ||||||||||| |||| | || | | ||||||||||||||| || ||
Sbjct 1474 GTTTGCTTGCATTGTTAAGTCTGTTAT-C-ATAT-T-ATTGTGGTCCTTTCATTCACAGT 1529
Query 1459 ATGTATGTTTATTGTCATCGTCAACTTGATGTTGTGGTCCTCTCACGGACCAGTAACTAA 1518
|||||||||||| |||| ||||| ||||||| |||||||||||||||||||||| | ||
Sbjct 1530 ATGTATGTTTATCATCATAGTCAAGTTGATGTCGTGGTCCTCTCACGGACCAGTA-C-AA 1587
Query 1519 GTAAGTGGCTTGTGTTTTTTCTT 1541
|||||||||||||||||||||||
Sbjct 1588 GTAAGTGGCTTGTGTTTTTTCTT 1610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76053825675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5