BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489672
Length=1414
Score E
Sequences producing significant alignments: (Bits) Value
AT5G29000.2 | Symbols: PHL1 | Homeodomain-like superfamily prot... 2143 0.0
> AT5G29000.2 | Symbols: PHL1 | Homeodomain-like superfamily protein
| chr5:11022083-11024275 REVERSE LENGTH=1541
Length=1541
Score = 2143 bits (1160), Expect = 0.0
Identities = 1320/1398 (94%), Gaps = 8/1398 (1%)
Strand=Plus/Plus
Query 1 CTGAATTAGGATACTGTGTGGTGTTTTGCAAAACTTCTCTTGTGCTATGACTCTGGCTAA 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 CTGAATTAGGATACTGTGTGGTGTTTTGCAAAACTGCTCTTGTGCTATGACTCTGGCTAA 60
Query 61 TGATTTCGGATATTCAACCGCTATGTCTTCATCTTTTTCAGCTCTTCATACTACTGTAGA 120
||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 61 TGATTTCGGATATTCGACCGCTATGTCTTCATCTTATTCAGCTCTTCATACTAGTGTAGA 120
Query 121 AGACAGATACCGCAAGTTGCCTAACTCTTTTTGGGTTTCATCAGGTCAGGAACTGATGAA 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGACAGATACCACAAGTTGCCTAACTCTTTTTGGGTTTCATCAGGTCAGGAACTGATGAA 180
Query 181 TAACCCTGTACCCTGTCAGTCGGTCTCTGGTGGAAATTCTGGTGGGTATTTGTTTCCTTC 240
|||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 181 TAACCCTGTACCGTGTCAGTCGGTCTCTGGTGGCAATTCTGGTGGTTATTTGTTTCCTTC 240
Query 241 TCCCTCTGGATTCTGCAATGTTTCAGCTGTCTCGCCTCATGGAAGGAATTCGCAAAACCA 300
| ||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 241 TTCCTCTGGATACTGCAATGTTTCAGCTGTCTTGCCTCATGGAAGGAATTTGCAAAACCA 300
Query 301 GCCACCTGTTTCCACCGTTCCAAGAGAAAGATTGGCTATGCAGGATTGCCCTTTGGA-AG 359
|||||||||||||||||| || ||||| |||||||||||||||||||| ||||| || ||
Sbjct 301 GCCACCTGTTTCCACCGTGCCTAGAGACAGATTGGCTATGCAGGATTGTCCTTT-GATAG 359
Query 360 CTCAGCCCCCCTTGTTGATTAATCATCACCATCAAGAGTTCACAGATCCGCTTCCGGAGT 419
|||| ||| ||||||||||||||||| ||||||||||| |||||| |||| ||||
Sbjct 360 CTCA---ATCCTCGTTGATTAATCATCACCCTCAAGAGTTCATAGATCCACTTCATGAGT 416
Query 420 TCTTTGATTTCTCTGATCATGTTCCTGTTCAGAATCTACAAGCAGAGAGCAGCGGAGTAA 479
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 417 TCTTTGATTTCTCTGATCATGTTCCTGTTCAGAATCTACAAGCAGAGAGTAGTGGAGTAA 476
Query 480 GGGTGGACTCATCCGTGGAACTCCATAAGAAAAGCGAATGGCAAGAGTGGGCTGATCAGT 539
|||||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||
Sbjct 477 GGGTGGACTCATCCGTGGAACTTCATAAGAAAAGTGAATGGCAAGATTGGGCAGATCAGC 536
Query 540 TGATTTCTGTTGATGATGGTTCAGAGCCAAATTGGTCTGAACTTCTTGGAGATTCAAGTT 599
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 537 TGATTTCTGTTGACGATGGTTCTGAGCCAAATTGGTCTGAACTTCTTGGAGATTCAAGTT 596
Query 600 CCCACAATCCAAATTCAGAGATACCTACACCATTTTTGGATGTTCGAAGGCAAGAGATAA 659
||||||||||||||||||||||||||||||||||||||||||| | ||||| ||| ||||
Sbjct 597 CCCACAATCCAAATTCAGAGATACCTACACCATTTTTGGATGTACCAAGGCTAGATATAA 656
Query 660 AAGCCAACCAGCAGCAACAGGTTGTTTCATCAGAGGACCAGCTCAGTGGCAAAAACTCAT 719
||| ||||||||||||||| | ||||||||||||||||||||||| |||| ||||||||
Sbjct 657 CAGCTAACCAGCAGCAACAGATGGTTTCATCAGAGGACCAGCTCAGCGGCAGAAACTCAT 716
Query 720 CATCTAGTGTAGCAACATCTAAACAACGCATGCGTTGGACACCAGAACTTCACGAGGCAT 779
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 717 CATCTAGTGTAGCAACATCTAAACAACGTATGCGTTGGACACCAGAACTTCACGAGGCAT 776
Query 780 TCGTTGAAGCTGTTAATCAGCTTGGTGGTAGTGAACGAGCCACACCTAAGGCTGTTTTGA 839
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 777 TCGTTGAAGCTGTTAATCAGCTTGGTGGTAGTGAACGAGCCACCCCTAAGGCTGTTTTGA 836
Query 840 AGCTCTTGAATATCCCTGGCTTGACCATTTATCATGTAAAAAGCCATTTGCAGAAATACA 899
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 837 AGCTCTTGAATAACCCTGGCTTGACCATTTATCATGTAAAAAGCCATTTGCAGAAATATA 896
Query 900 GAACGGCAAGATATAAACCGGATACTTCGGAAGTTACAGGAGAACCTCAAGAGAAGAAGA 959
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 897 GAACGGCAAGGTATAAACCGGAGACTTCGGAAGTTACAGGAGAACCTCAAGAGAAGAAGA 956
Query 960 TGACATCTATTGAAGATATCAAATCTCTTGACATGAAAACGAGCGTTGAAATCACACAAG 1019
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 957 TGACATCTATTGAAGATATCAAATCTCTTGACATGAAAACGAGCGTTGAGATCACACAAG 1016
Query 1020 CTCTACGGTTACAGATGGAAGTGCAGAAACGTCTCCATGAGCAGCTCGAGATTCAACGGT 1079
||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1017 CTCTACGGTTACAAATGGAAGTGCAGAAACGTCTCCACGAGCAGCTCGAGATCCAACGGT 1076
Query 1080 CACTGCAGTTACAGATTGAAAAACAGGGCCGATACCTACAGATGATGTTCGAGAAACAAC 1139
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1077 CACTGCAGTTACAGATTGAAAAACAGGGCCGGTACCTACAGATGATGTTCGAGAAACAAC 1136
Query 1140 AAAAGATACAAGAGAACAAGAGCTCTTCCCCAGAAGCATCACCAAAGCAATGCAACGGTA 1199
||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1137 AAAAGATACAAGACAACAAGAGCTCTTCTTCAGAAGCATCACCAAAGCAATGCAATGGTT 1196
Query 1200 CAGCAGCAGAAGTCGAAGTTGATCTTGAGACACGAACAGGGGACCAAAATGAACCTGCTT 1259
|| |||||||| ||||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct 1197 CATTTGCAGAAGTTGAAGTTGGTCTTGAGACACTAACAGGGGACCAAAATGAATCTGCTT 1256
Query 1260 CAGCATCAAGGAAACGTGTCAGAGAAGATTAAAAGAA-GTTTAATTTGATCTCGTTGG-C 1317
||||||||||||||||||||||||||||||||| | | |||||||||||||||||| | |
Sbjct 1257 CAGCATCAAGGAAACGTGTCAGAGAAGATTAAA-GCATGTTTAATTTGATCTCGTTTGAC 1315
Query 1318 GAAACATGTTTATTGGGAATTAATTGTGGAAACCAACTCCAGTTTTGTTAAAAGAATCTG 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 GAAACATGTTTATTGGGAATTAATTGTGGAAACCAACTCCAGTTTTGTTAAAAGAATCTG 1375
Query 1378 TTTCTTTCCTAGCTTTGT 1395
|||||||| ||||| |||
Sbjct 1376 TTTCTTTCTTAGCTCTGT 1393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69678356460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5