BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489677
Length=824
Score E
Sequences producing significant alignments: (Bits) Value
AT5G30495.2 | Symbols: | Fcf2 pre-rRNA processing protein | ch... 1242 0.0
AT1G54770.1 | Symbols: | Fcf2 pre-rRNA processing protein | ch... 835 0.0
> AT5G30495.2 | Symbols: | Fcf2 pre-rRNA processing protein |
chr5:11380001-11381562 FORWARD LENGTH=838
Length=838
Score = 1242 bits (672), Expect = 0.0
Identities = 776/827 (94%), Gaps = 4/827 (0%)
Strand=Plus/Plus
Query 1 ACAGTTCCATCAACTAGGGTTTTCGTCGGCCGGAATTTCCAAAGAACAAAGGCAGTTTAG 60
||||||||||||| ||||| ||||||| |||||||| |||| |||||||||||| ||||
Sbjct 13 ACAGTTCCATCAATTAGGGCTTTCGTCAGCCGGAATCTCCAGAGAACAAAGGCAATTTAC 72
Query 61 AGTTATGGCAGAGACTAAACCATTGATTGGTCTAAAATGGGAACCAAAGCTTCCAGGCTT 120
||| ||||||||||||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct 73 AGTAATGGCAGAGACTAAACCATTGATAGGTCTTACGTGGGAACCAAAGCTTCCAGGCTT 132
Query 121 ATCCTTAGACTCGACAAC-TGGTTCCAGTTTAAGCAAAAGAGCTGAGAGTCACGAAAGCA 179
|||||||||| ||| ||| | |||||| || ||||||||||| |||||||||||||||||
Sbjct 133 ATCCTTAGACACGAAAACAT-GTTCCACTTCAAGCAAAAGAGTTGAGAGTCACGAAAGCA 191
Query 180 GTTCGCTCTGGATGTCTAAGTCAGAGCTTGTCGATGGTCTTTGTCTTCCACCTAATGATC 239
|||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 192 GTTCTCTCTGGATGTCTAAGTCAGAGCTTGTTGATGGTCTTTGTCTTCCTCCTAATGATC 251
Query 240 CAAAGAAGATTAACAAGATGATTAGGAAACAAGTCAAAGATACCACTGGTTCAAACTGGT 299
||||||||||||| |||||||||||||||||| ||||||| || ||||||||||||||||
Sbjct 252 CAAAGAAGATTAATAAGATGATTAGGAAACAAATCAAAGACACAACTGGTTCAAACTGGT 311
Query 300 TTGATATGCCTGCACCAACAATGACTCCTGAGTTAAAAAGAGATCTTCAGTTGCTTAAGT 359
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 312 TTGATATGCCTGCACCAACAATGACTCCGGAGTTGAAAAGAGATCTTCAGTTGCTTAAGT 371
Query 360 TGAGAACTGTAATGGATCCTGCTCTACACTACAAGAAATCTGTGTCACGGTCAAAACTAG 419
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 372 TGAGAACTGTAATGGATCCTGCTGTACACTACAAGAAATCTGTGTCACGGTCAAAGCTAG 431
Query 420 CTGAAAAATATTTCCAGATTGGAACAGTAATTGAACCAGCTGAAGAGTTCTATGGAAGAT 479
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 432 CTGAAAAATATTTCCAGATTGGTACAGTAATTGAACCAGCTGAAGAGTTCTATGGAAGAT 491
Query 480 TAACAAAGAAGAATAGAAAAGCAACTCTTGCTGATGAGTTGGTGTCAGATCCCAAAACTT 539
| || |||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 492 TGACTAAGAAGAATAGAAAAGCAACTCTTGCTGATGAGTTGGTTTCAGATCCCAAAGTTT 551
Query 540 CTCAGTACAGGAAGCGTAAAGTTAAGGAGATTGAGGAGAAGAGTAGAGCTGTTACAAATA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 CTCAGTACAGGAAGCGTAAAGTTAAGGAGATTGAGGAGAAGAGTAGAGCTGTTACAAATA 611
Query 600 AGAAGTGGAAGAAAAAGGGAAACCAATCCAAGAACAAAAAGCAAAGAAGGAACTGATTTA 659
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 612 AGAAGTGGAAGAAAAAGGGAAACCAAACCACGAACAAAAAGCAAAGAAGGAACTGATTTA 671
Query 660 CTTTTGTTAGAATATGATCATAGTTT-GGGATACAT-TTTTCTGTTTTGATTAGAATATT 717
|||||||||||||||||| ||||||| ||||||| | |||||||||||||||||||||||
Sbjct 672 CTTTTGTTAGAATATGATTATAGTTTTGGGATACTTATTTTCTGTTTTGATTAGAATATT 731
Query 718 GATCATAGTATCGTGACACACTTTCTTTTGGTGCTATAGATTCACATTACCTTGTAATGA 777
||||||||||||| |||||||||||| |||||||||||||||||| ||||| ||||||||
Sbjct 732 GATCATAGTATCGGGACACACTTTCTGTTGGTGCTATAGATTCACCTTACCCTGTAATGA 791
Query 778 CTGTTGTTGGTTTATGGGCTTCGTTTAAAGGATTTGTGTTATCCGTT 824
|| |||||| ||||||||||||| ||||||||||| ||||||| |||
Sbjct 792 CTCTTGTTGTTTTATGGGCTTCGATTAAAGGATTTCTGTTATCGGTT 838
> AT1G54770.1 | Symbols: | Fcf2 pre-rRNA processing protein |
chr1:20434639-20436008 FORWARD LENGTH=927
Length=927
Score = 835 bits (452), Expect = 0.0
Identities = 683/786 (87%), Gaps = 49/786 (6%)
Strand=Plus/Plus
Query 43 AGAACAAAGGCAGTTTAGAGTTATGGCAGAGACT--A-AACCATTGATTGGTCTAAAATG 99
|||||||||||| |||| | | |||||||||||| | ||||| |||| ||||| |||||
Sbjct 143 AGAACAAAGGCAATTTACAATAATGGCAGAGACTAAACAACCACTGATCGGTCTTAAATG 202
Query 100 GGAACCAAAGCTTCCAGGCTTATCCTTAGACTCGACAACTGGTTCCAGTTTAAGCAAAAG 159
|||||||||||||||||||||||||||||||| || |||||||| | || |
Sbjct 203 GGAACCAAAGCTTCCAGGCTTATCCTTAGACTTGAAAACTGGTT-C-----AA-C----- 250
Query 160 AGCTGAGAGTCACGAAAGCAGTTCGCTCTG-GATG-TCTAAGTCAGAGCTTGTCGATGGT 217
| || || || ||| || | ||| || | ||||||||||||||||| ||||||
Sbjct 251 --CAGA-AG-CA--AAA-CA----G--CTGAGA-GTTCTAAGTCAGAGCTTGTTGATGGT 296
Query 218 CTTTGTCTTCCACCTAATGATCCAAAGAAGATTAACAAGATGATTAGGAAACAAGTCAAA 277
||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||
Sbjct 297 CTTTGTCTTCCACCTAATGATCCAAGGAAGATTAACAAGATGATTAGAAAACAACTCAAA 356
Query 278 GATACCACTGGTTCAAACTGGTTTGATATGCCTGCACCAACAATGACTCCTGAGTTAAAA 337
|| || |||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 357 GACACTACTGGTTCTAACTGGTTTGATATGCCTGCTCCAACAATGACTCCTGAGTTGAAA 416
Query 338 AGAGATCTTCAGTTGCTTAAGTTGAGAACTGTAATGGATCCTGCTCTACACTACAAGAAA 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AGAGATCTTCAGTTGCTTAAGTTGAGAACTGTAATGGATCCTGCTCTACACTACAAGAAA 476
Query 398 TCTGTGTCACGGTCAAAACTAGCTGAAAAATATTTCCAGATTGGAACAGTAATTGAACCA 457
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 477 TCTGTGTCACGGTCTAAACTAGCTGAAAAATATTTCCAGATTGGTACAGTAATTGAACCA 536
Query 458 GCTGAAGAGTTCTATGGAAGATTAACAAAGAAGAATAGAAAAGCAACTCTTGCTGATGAG 517
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 537 GCTGAAGAGTTTTATGGGAGATTGACAAAGAAGAATAGAAAAGCAACTCTTGCTGATGAG 596
Query 518 TTGGTGTCAGATCCCAAAACTTCTCAGTACAGGAAGCGTAAAGTTAAGGAGATTGAGGAG 577
||||| |||||||| |||||| ||| ||||||||||||||||||| |||||||||||||
Sbjct 597 TTGGTTTCAGATCCTAAAACTGCTCTCTACAGGAAGCGTAAAGTTAGGGAGATTGAGGAG 656
Query 578 AAGAGTAGAGCTGTTACAAATAAGAAGTGGAAGAAAAAGGGAAACCAATCCAAGAACAAA 637
||||||||||||||||| |||||||| ||||| |||||||||||||| || ||||||| |
Sbjct 657 AAGAGTAGAGCTGTTACGAATAAGAAATGGAATAAAAAGGGAAACCAGTCTAAGAACACA 716
Query 638 AAGCAAAGAAGGAACTGATTTACTTTTGTTA-GAATATGATCATAGTTT-GGGATACATT 695
|||| ||||||||||||| ||| |||||||| || |||||||||||||| |||| |||||
Sbjct 717 AAGCCAAGAAGGAACTGAATTATTTTTGTTAAGAGTATGATCATAGTTTTGGGACACATT 776
Query 696 TTT-CTGTTTTGATTAGAATATTGATCATAGTATCGTGACACACTTTCTTTTGGTGCTAT 754
||| || |||| | |||||||| | ||||||||| | || |||||||||| |||| |||
Sbjct 777 TTTTCTATTTTTAATAGAATATGG-TCATAGTATTG-GATACACTTTCTTGCGGTGATAT 834
Query 755 AGATTCACATTACCTTGTAATGACTGTTGTTGGTTTATGGGCTTCGTTTAAAGGATTT-G 813
|| || ||||||||| |||||| ||||||| ||| ||||||||||||| |
Sbjct 835 AGGTT-----------GTAATGACTCTTGTTG-TTTATGGCCTTTGTTTAAAGGATTTTG 882
Query 814 TGTTAT 819
||||||
Sbjct 883 TGTTAT 888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40137083453
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5