BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489679
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
AT5G30490.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Craniofac... 1301 0.0
> AT5G30490.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Craniofacial
development protein 1/Bucentaur (InterPro:IPR011421);
Has 333 Blast hits to 324 proteins in 149 species: Archae -
0; Bacteria - 18; Metazoa - 117; Fungi - 96; Plants - 49; Viruses
- 0; Other Eukaryotes - 53 (source: NCBI BLink). | chr5:11611983-11614530
FORWARD LENGTH=1050
Length=1050
Score = 1301 bits (704), Expect = 0.0
Identities = 885/969 (91%), Gaps = 26/969 (3%)
Strand=Plus/Plus
Query 1 AGTTCCATCAATTAGGGTTTTCGTCGGCCGGAAGTTCCAGGTAGAGGCGTATCTTGAATC 60
||||||| ||||||||||||||||| ||| ||| ||||| | ||| |||||||||||||
Sbjct 20 AGTTCCACCAATTAGGGTTTTCGTCCGCCAGAATTTCCA-G-AGA--CGTATCTTGAATC 75
Query 61 TAGACATGGGGTCTCATGAGCAAACGCCAGAGAA-AAGTGGTTCGAGCACTGTATCGAAA 119
|||||||||| |||||||||||| |||| ||||| || ||||||||||||||||||||
Sbjct 76 TAGACATGGGATCTCATGAGCAATCGCCTGAGAATAA-CGGTTCGAGCACTGTATCGAAG 134
Query 120 AAAGTTGCGGAGATTTGGCAGCGAATGAACGAAGGAGTTCCAAATAAACG-GCTCAATTT 178
|||||||| || |||||||| ||||||||||||||||||||||||||||| | |||||||
Sbjct 135 AAAGTTGCTGATATTTGGCAACGAATGAACGAAGGAGTTCCAAATAAACGTG-TCAATTT 193
Query 179 TGCCTCAACCGCCTTGCCCGCTAAAAAAC-CAGCTAGTAGCAATTGGAAAAGTTATCTTG 237
| ||||||||| ||||||||| |||||| |||||| ||||||||||||||||||||| |
Sbjct 194 CGTCTCAACCGCTTTGCCCGCT-AAAAACTCAGCTAATAGCAATTGGAAAAGTTATCTCG 252
Query 238 GTGTGGGTGCAAAGAGGAAGGATCA-TTGCGTTTC-GAATGTACAAAAGGAAGATAGCCT 295
||||| || |||| ||||||| | ||| ||||| | ||||||| || | || | | |
Sbjct 253 GTGTGAATGTGAAGAAGAAGGAT-ACTTGTGTTTCTG-ATGTACAGAA-G-AG-T-G--T 304
Query 296 TTTGAATCATAGTTGTAGTGAGGATGCTAAAAGTATTGCTGCAGCTGCTTTAGCTGCGGT 355
|||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 305 TTTGAATCATAGCTGTAGTGAGGAGGCTAAGAGTATTGCTGCAGCCGCTTTAGCTGCGGT 364
Query 356 GAGAAATGCAACTGTAACGGCTGCAGCTGCATCGAGCCGGGGCAAGATTGAGATAACTGA 415
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 365 GCGAAACGCAACTGTAACGGCTGCAGCTGCATCGAGCCGGGGCAAGATTGAGATAACCGA 424
Query 416 GGTCAAAGACTTTGCGGGTCAAGAAATTGAAGTAAAGCGGTTAGTGGAAGCGGATTCAAA 475
||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 425 GGTCAAAGATTTTGCGGGTCAAGAAATCGAAGTAAAGCGGTTAGTTGAAGCGGATTCAAA 484
Query 476 GGAAGCATTAGAGCGGGGAAACAAAGGCTCCTCTTCTTCCTCGGCAGCGCCTTCAGCGGT 535
||||||||| ||| |||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 485 GGAAGCATTGGAGAGGGGAAACAAAGGCTCCTCTTCCTCCTCAGCAGCGCCTTCAGCGGT 544
Query 536 TGATGCGGTTCTTGAGCAGATAAAAAAGAAACAAAAGCTGAGTGTTTTGGACAAGACGAA 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 TGATGCGGTTCTTGAGCAGATAAAAAAGAAACAAAAGCTGAGTGTTTTGGACAAGACGAA 604
Query 596 GAAAGATTGGGGAGAGTACAAGGAGGAAAACAAAGGAGTTGAAGACGAGCTAGATAAGTA 655
|||||||||||||||||| ||||| ||| ||||||| |||||||||||||||||||||||
Sbjct 605 GAAAGATTGGGGAGAGTATAAGGAAGAACACAAAGGTGTTGAAGACGAGCTAGATAAGTA 664
Query 656 CAAGAAAAGCTCGGATCAGTATCTCGACAAAGTTGGTTTCTTGGAGAGAGCTGATTACAG 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 CAAGAAAAGCTCGGATCAGTATCTCGACAAAGTTGGTTTCTTGGAGAGAGCTGATTACAG 724
Query 716 ACAGTTTGAGAAAGAGAGAGACGCTCGTTTAGCTCTTCAGTCCAAGAGAAGACACGATGA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 ACAGTTTGAGAAAGAGAGAGACGCTCGTTTAGCTCTTCAGTCCAAGAGAAGACACGATGA 784
Query 776 TGTATGAAATGTGACC-GAC-GACTCTTTTAACATGTAAGAAATCATTTTCTCAAGTGAT 833
||||||||||| | ||| ||| ||||||||||||| ||||||||||||||||| ||
Sbjct 785 TGTATGAAATGAAATGTGACCGACCCTTTTAACATGTATGAAATCATTTTCTCAAGCCAT 844
Query 834 TTTGGTCACATTCTTTCCAGAGTCTTAACCGAGTGCCCGTTGCTTGATTGATT--GATTG 891
||||||||||||||||||| ||||| |||||||| |||||||| ||||||||| ||||
Sbjct 845 TTTGGTCACATTCTTTCCATAGTCTAAACCGAGTTCCCGTTGCATGATTGATTCTGATT- 903
Query 892 TTTTTATGACTCGTTCATAAGAATTGAAAACATCCTCTCTTGTAGGCCATGGACTGTGAA 951
|||| ||| |||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 904 TTTT-ATGTCTCGTTCATAAGAATTGAGAACATCCTCTCTTGTAGGCCATGGACAATGAA 962
Query 952 ATGGGCTTG 960
|||||||||
Sbjct 963 ATGGGCTTG 971
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46968927445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5