BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489681
Length=1412
Score E
Sequences producing significant alignments: (Bits) Value
AT5G30510.1 | Symbols: RPS1, ARRPS1 | ribosomal protein S1 | ch... 2362 0.0
> AT5G30510.1 | Symbols: RPS1, ARRPS1 | ribosomal protein S1 |
chr5:11619026-11621298 REVERSE LENGTH=1562
Length=1562
Score = 2362 bits (1279), Expect = 0.0
Identities = 1372/1417 (97%), Gaps = 6/1417 (0%)
Strand=Plus/Plus
Query 1 AACCCAACGATAAAACGCAGGAGCCATTAGAAG---AACAGATAAAACTCTTTCTGTGAG 57
|||||||||||||||||||||||||| |||||| ||||||||||||||| | ||||||
Sbjct 1 AACCCAACGATAAAACGCAGGAGCCA-TAGAAGAATAACAGATAAAACTCTCTGTGTGAG 59
Query 58 TGAGTGAGACTCAACAATGGCGTCTTTGGCTCAGCAATTCACGGGATTGAGATGTTCTCC 117
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 60 TGAGTGAGACTCAACCATGGCGTCTTTGGCTCAGCAATTCTCGGGATTGAGATGTTCCCC 119
Query 118 ACTCTCTTCTTCTTCTAGGTTATCGAGGAGAGTTTCGAAGAATTTTCCGCAGAACAAATC 177
|||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||
Sbjct 120 ACTCTCTTCTTCTTCTAGGTTATCGAGGAGAGCTTCGAAGAACTTTCCCCAGAACAAATC 179
Query 178 TGCCTCCGTTTCTCCGACTATTGTCGCCGCGGTTGCGATGTCTAGCGGTCAAACGAAGGA 237
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 180 TGCCTCTGTTTCTCCGACTATTGTCGCCGCGGTTGCAATGTCTAGCGGTCAAACAAAGGA 239
Query 238 GCGTCTCGAGCTGAAGAAGATGTTCGAAGATGCTTATGAACGATGTAGAACTGCTCCTAT 297
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 240 GCGTCTTGAGCTGAAGAAGATGTTCGAAGATGCTTATGAACGATGTAGAACTTCTCCTAT 299
Query 298 GGAAGGTGTTGCTTTCACTGTCGACGATTTCGCAGCTGCTATTGAACAATACGACTTCAA 357
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 300 GGAAGGTGTTGCTTTCACCGTCGACGATTTCGCTGCTGCTATTGAACAATACGACTTCAA 359
Query 358 TTCCGAAATCGGCACTAGGGTAAAAGGAACAGTGTTCAAGACTGATGCAAATGGTGCATT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTCCGAAATCGGCACTAGGGTAAAAGGAACAGTGTTCAAGACTGATGCAAATGGTGCATT 419
Query 418 AGTTGACATTTCTGCAAAGTCATCGGCTTACTTGTCAGTGGAACAAGCGTGTATTCATAG 477
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 420 AGTTGACATTTCTGCAAAGTCATCGGCTTACTTGTCGGTAGAACAAGCGTGTATTCATAG 479
Query 478 AATTAAGCATGTGGAAGAAGCTGGTATTGTCCCTGGTATGGTGGAAGAGTTTGTCATCAT 537
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 480 AATTAAGCATGTGGAAGAAGCTGGTATTGTACCTGGTATGGTGGAAGAGTTTGTCATCAT 539
Query 538 CGGTGAAAATGAAAGTGATGACAGTTTGCTATTGAGCTTAAGGAATATTCAATACGAACT 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGGTGAAAATGAAAGTGATGACAGTTTGCTATTGAGCTTAAGGAATATTCAATACGAACT 599
Query 598 TGCTTGGGAACGATGCAGGCAGCTTCAGGCTGAGGATGTTATTGTCAAGGCTAAGGTTAT 657
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGCTTGGGAACGTTGCAGGCAGCTTCAGGCTGAGGATGTTATTGTCAAGGCTAAGGTTAT 659
Query 658 TGGTGCTAACAAAGGTGGATTGGTGGCTCTTGTGGAAGGTCTTCGTGGATTTGTGCCATT 717
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 660 TGGTGCTAACAAAGGTGGATTGGTTGCTCTTGTGGAAGGTCTTCGTGGATTTGTGCCCTT 719
Query 718 TTCGCAGATTTCATCGAAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTCAA 777
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 TTCGCAGATATCATCGAAAGCAGCAGCTGAAGAGCTTCTTGAAAAAGAAATACCTCTTAA 779
Query 778 GTTTGTGGAGGTTGATGAGGAACAAACAAAGCTTGTCCTCAGCAACCGTAAAGCTGTAGC 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GTTTGTGGAGGTTGATGAGGAACAAACAAAGCTTGTCCTCAGCAACCGTAAAGCTGTAGC 839
Query 838 AGACAGCCAGGCTCAGCTTGGAATTGGATCTGTTGTCCTCGGAGTTGTTCAGAGCTTGAA 897
||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 840 AGATAGCCAAGCTCAGCTTGGAATTGGATCTGTGGTCCTCGGAGTTGTTCAGAGCTTGAA 899
Query 898 ACCCTATGGTGCCTTCATTGACATTGGTGGAATCAATGGGCTTCTTCATGTCAGTCAGAT 957
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 ACCTTATGGTGCCTTCATTGACATTGGTGGAATCAATGGGCTTCTTCATGTCAGTCAGAT 959
Query 958 CAGTCATGACCGTGTCTCAGATATCGCAACTGTTCTTCAGCCTGGTGACACTTTGAAGGT 1017
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AAGTCATGACCGTGTCTCAGATATCGCAACTGTTCTTCAGCCTGGTGACACTTTGAAGGT 1019
Query 1018 TATGATACTGAGTCACGACCGTGACAGAGGAAGAGTAAGTCTCTCCACAAAGAAGCTGGA 1077
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TATGATATTGAGTCACGACCGTGACAGAGGAAGAGTAAGTCTCTCCACAAAGAAGCTGGA 1079
Query 1078 GCCAACACCTGGTGATATGATTCGCAACCCAAAACTTGTGTTCGAGAAGGCTGAGGAGAT 1137
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1080 GCCAACACCTGGTGATATGATTCGTAACCCAAAACTTGTGTTCGAGAAGGCTGAGGAGAT 1139
Query 1138 GGCTCAGACATTCAGACAGAGAATTGCGCAAGCAGAAGCCATGGCTCGTGCAGACATGCT 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GGCTCAGACATTCAGACAGAGAATTGCGCAAGCAGAAGCCATGGCTCGTGCAGACATGCT 1199
Query 1198 TCGCTTCCAGCCTGAGAGCGGACTGACGCTGAGTTCTGACGGGATACTAGGACCACTCGG 1257
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TCGCTTCCAACCTGAGAGTGGACTGACGCTGAGTTCTGACGGGATACTAGGACCACTCGG 1259
Query 1258 ATCTGATTTACCAGATGATGGCGTAGATCTAACGGTCGACGACATTCCTTCTGCTGTTGA 1317
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1260 ATCTGAGTTACCAGATGATGGCGTAGATCTAACGGTCGACGACATTCCTTCTGCAGTTGA 1319
Query 1318 TCTTTAGATTCTAAAGCTTTAGTGTATTTTTTCATAGACAAAAACACCTCCTTGAGCTTA 1377
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1320 TATTTAGATTCTAAAGCTTTAGTGTATTTTTTCATACACAAAAACACCTCCTTGAGCTTA 1379
Query 1378 ATTGAATATGTAGTTG-CT-CCTACAAGACATTGTAT 1412
||||||||||||||| || ||||||||||||| |||
Sbjct 1380 ATTGAATATGTAGTTTACTTCCTACAAGACATTTTAT 1416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69577955370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5