BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489685
Length=1164
Score E
Sequences producing significant alignments: (Bits) Value
AT4G06599.1 | Symbols: | ubiquitin family protein | chr4:36659... 1783 0.0
AT4G06598.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 60.2 4e-08
> AT4G06599.1 | Symbols: | ubiquitin family protein | chr4:3665925-3667547
REVERSE LENGTH=1229
Length=1229
Score = 1783 bits (965), Expect = 0.0
Identities = 1101/1167 (94%), Gaps = 8/1167 (1%)
Strand=Plus/Plus
Query 1 AAATGGCTTCCTCTTCCTCTTCTCCGACGCCTAGTGCTACGGCGGCGCTCTCTCCTCTTA 60
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 51 AAATGGCTTCCTCTTCCTCTTCTCCGACGCCTAGTGCTGCGGCGGCGGTCTCTCCTCTTA 110
Query 61 CGGAGGAGGAACTAACTCTGACAGTTAAATGGAATGGAAAAGAGTACACCGTACGAATCT 120
||||||| ||| ||||||| |||||||| ||||||||||||||||||||||| || ||||
Sbjct 111 CGGAGGAAGAATTAACTCTAACAGTTAAGTGGAATGGAAAAGAGTACACCGTCCGTATCT 170
Query 121 GTGCCGACGACTCAGTCGCCGAGTTAAAACGTCGCATCTGCCTTCTCACCACCGTCTTAC 180
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 171 GTGCCGATGACTCAGTCGCCGAGCTAAAACGTCGCATCTGCCTTCTCACCACCGTTTTAC 230
Query 181 CTAAACGCCAAAAGCTTCTTTACCCCAAGATCGGAAACAAACTCTCTGACGATTCTCTTT 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 231 CTAAACGCCAAAAGCTTCTTTATCCCAAGATCGGAAACAAACTCTCTGACGATTCTCTTT 290
Query 241 TACTCTCTTCGATCCCCTTTAAGCCATCGCTGAAGATGACAATGATCGGTACTATTGAAG 300
|||||||||||||| |||||||||| || || ||||||||||||||||||||| ||||||
Sbjct 291 TACTCTCTTCGATCTCCTTTAAGCCCTCCCTCAAGATGACAATGATCGGTACTGTTGAAG 350
Query 301 ATGATATAATAGTGGATCAAGCTGAATCTCCTGAAATTGTTGATGATTTTGAGCTTGGTA 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 ATGATATAATAGTAGATCAAGCTGAATCTCCTGAAATTGTTGATGATTTTGAGCTTGGTA 410
Query 361 AGGAAGAAGCTGTGGATATTAAAGATAAAGAAGTCAATAAACAGAAGTTGAGAAGAAGAA 420
||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 411 AGGAAGAAGCTGTTGATGTTAAAGATAAAGAAGTTAATAAACAGAAGTTGAGAAGAAGAA 470
Query 421 TTGATCAATACAAGATAAATCTTCGATCGCCATGTCGTAAAGGCAAGAAACTTCTTGTTT 480
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 471 TTGATCAATACAAGATAAATCTTCGAACGCCATGTCGTCAAGGCAAGAAACTTCTTGTTT 530
Query 481 TAGATATTGACTATACATTGTTCGACCACCGTTCCACCGCGGAGAATCCCTTACAGCTTA 540
||||||| ||||||||||||||||| || || ||||||||||||||||| || |||||||
Sbjct 531 TAGATATCGACTATACATTGTTCGATCATCGGTCCACCGCGGAGAATCCGTTGCAGCTTA 590
Query 541 TGCGTCCTTATCTTCATGAGTTTCTTACTGCTGCGTATGCGGAATACGATATCATGATAT 600
||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 591 TGCGTCCTTATCTCCATGAGTTTCTTACTGCTGCTTATGCGGAATATGATATCATGATTT 650
Query 601 GGTCTGCTACCAGTATGAAGTGGGTTGAGTTGAAGATGACTGAGCTGGGAGTGCTGAACA 660
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 651 GGTCTGCTACCAGTATGAAGTGGGTGGAGTTGAAGATGACAGAGCTGGGAGTGCTGAACA 710
Query 661 ATCCTAACTACAAGATCACAGCTCTTCTCGACCATCTTGCAATGATCACGGTCCAGTCAG 720
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 711 ATCCTAACTACAAGGTCACGGCTCTTCTCGACCATCTTGCAATGATCACGGTCCAGTCAG 770
Query 721 ACACTCGTGGGATTTTTGATTGCAAACCACTAGGCTTAATTTGGGCACTACTTCCTGAGT 780
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 771 ACACTCGCGGGATTTTTGATTGCAAACCGCTAGGCTTAATTTGGGCACTACTTCCTGAGT 830
Query 781 TTTATAATCCTGGGAACACGATAATGTTTGATGACCTAAGGAGGAATTTCGTAATGAATC 840
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 TCTATAACCCTGGTAACACGATAATGTTTGATGACCTAAGGAGGAATTTCGTAATGAATC 890
Query 841 CTCAAAACGGTCTAACAATCAGGCCGTTTAGGAAAGCTCATGCAAATCGTGATACAGATC 900
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 891 CTCAAAACGGTCTAACAATCAAGCCGTTTAGGAAAGCTCATGCAAATCGTGATACAGATC 950
Query 901 AAGAGCTTGTGAAGCTGACTCAGTACCTTCTGACAATAGCAGAGCT-ACATGATTTGAGT 959
|||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 951 AAGAGCTTGTGAAGCTGACTCAGTACCTTCTGACAATAGCTGAGCTTAG-TGATTTGAGT 1009
Query 960 TCTCTACACCATAGCAGATGGGAATCATTCTCCCAGGACAACGTCAAAAGGCGCAGACAG 1019
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1010 TCTCTACACCATAGCAGATGGGAATCATTCTCACAGGACAACGTCAAAAGGCGCAGACAG 1069
Query 1020 GAATGACTTGGCCGCATCAATATTACTCGG-TTTTTGTTTAGTTTTCATGACATACCAAG 1078
|||||||| ||||||||| |||||| |||| |||||||||||||||| ||| ||||||||
Sbjct 1070 GAATGACTCGGCCGCATCCATATTA-TCGGGTTTTTGTTTAGTTTTCTTGAAATACCAAG 1128
Query 1079 AGGTTCAGATGTCACTTTTTGCTTGCCTT-ATATATTTTATGGGTTGGTAGAACGGTCAA 1137
|| ||||| | |||||||||| | |||| | |||||||||| ||||| |||||||||||
Sbjct 1129 AGATTCAGTTATCACTTTTTG-T--CCTTTACATATTTTATGAGTTGGAAGAACGGTCAA 1185
Query 1138 CATTTTATTAGTAGTTTCGAATGTTAA 1164
|||||||||||||||||| || |||||
Sbjct 1186 CATTTTATTAGTAGTTTCAAACGTTAA 1212
> AT4G06598.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Basic-leucine zipper (bZIP) transcription factor family
protein (TAIR:AT1G58110.2); Has 392 Blast hits to 388 proteins
in 30 species: Archae - 0; Bacteria - 0; Metazoa - 15;
Fungi - 8; Plants - 363; Viruses - 0; Other Eukaryotes -
6 (source: NCBI BLink). | chr4:3663485-3665981 FORWARD LENGTH=1658
Length=1658
Score = 60.2 bits (32), Expect = 4e-08
Identities = 36/38 (95%), Gaps = 0/38 (0%)
Strand=Plus/Minus
Query 1127 AGAACGGTCAACATTTTATTAGTAGTTTCGAATGTTAA 1164
||||||||||||||||||||||||||||| || |||||
Sbjct 1656 AGAACGGTCAACATTTTATTAGTAGTTTCAAACGTTAA 1619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57128220210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5