BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg489688 Length=1469 Score E Sequences producing significant alignments: (Bits) Value AT4G06744.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 2100 0.0 > AT4G06744.1 | Symbols: | Leucine-rich repeat (LRR) family protein | chr4:4070813-4072305 REVERSE LENGTH=1493 Length=1493 Score = 2100 bits (1137), Expect = 0.0 Identities = 1350/1450 (93%), Gaps = 26/1450 (2%) Strand=Plus/Plus Query 1 GTTATCATTTTGTATTTTACTTCCCAATGATTTATAAATTTTTATAACGTTTT-ATATTT 59 ||||||||||||||||||||||||||||||||| | ||||||||||||||||| | |||| Sbjct 15 GTTATCATTTTGTATTTTACTTCCCAATGATTTCTCAATTTTTATAACGTTTTGA-ATTT 73 Query 60 CATAAACCTAGTGGCTAGTAG-TAAGAAACTCTCAAGAAACCTACCCACCTaaaaagaga 118 ||||||||||||||||||| | || || |||||||||||||||||||||||||||||||| Sbjct 74 CATAAACCTAGTGGCTAGT-GATATGATACTCTCAAGAAACCTACCCACCTAAAAAGAGA 132 Query 119 gaaaaacaaaacaaaa-aaTAGTAAGGCACAATAAACACTAAGACCACCTCTTCTCTTGT 177 |||||||||||||||| ||||||||||||| |||||||||| || ||| |||||||||| Sbjct 133 GAAAAACAAAACAAAAGAATAGTAAGGCAC--TAAACACTAAAACTACCACTTCTCTTGT 190 Query 178 ATCGCCGACAAAGTTTTGTTCAGTGGCAAAGATGAAGAATCCTTTGCTTTTGGCTCTTTT 237 ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 191 ATCGCCGACAAAGCTTTGTTCAGTGGCAAAGATGATGAATCATTTGCTTTTGGCTCTTTT 250 Query 238 CCTTGTTGGCACCGTCGCTTTACCAGATAGAAGCAGCAGAGGAACTCAAGAATTGACCAA 297 ||||||||| ||| |||| ||||||||| |||||||||||| |||||||||| Sbjct 251 CCTTGTTGGAACCATCGCCTTACCAGAT---------AGAGGAACTCAACAATTGACCAA 301 Query 298 CGATGGCCTCACCGGCACGAGTCAAGCA-ATACTCTCTTTCTTTGACCAAAGACTTGCAG 356 |||||||||||||||| |||| | || | |||||||||||||| |||||||||||||||| Sbjct 302 CGATGGCCTCACCGGCGCGAGGCGAG-AGATACTCTCTTTCTTAGACCAAAGACTTGCAG 360 Query 357 TGGTGTACCCAGTGATCCAGAGATTCAAGTCACTCATCACTCTCGACCCTTATAACGTAA 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 361 TGGTGTACCCAGTGATCCAGAGATTCAAGTCACTCATCACTCTCGACCCTTATAACGTGA 420 Query 417 CCAAGACATGGATTGGTTCAGACATCTGTAGTTATAGAGGCTTCCACTGTGACAATCCTC 476 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 421 CCAAGACATGGATTGGTTCAGACATCTGCAGTTATAGAGGCTTCCACTGTGACAATCCTC 480 Query 477 CGGACAACACAACCGCAGTTACTGTCGCTTCTATCGATTTCAATGGCTTTCAGCTCTCTG 536 | |||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 481 CTCACAACAAAACCGCAGTTACTGTTGCTTCCATCGATTTCAATGGCTTTCAGCTCTCTG 540 Query 537 CTCCCTCCATCGAAGGATTTATCGATCAATTCCCTGACTTAGCTCTGTTTCATGTTAACT 596 |||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 541 CTCCATCCATCGAAGGATTTATCGATCAATTCGCTGACCTAGCTCTGTTTCATGTTAACT 600 Query 597 CCAACAACTTTGGAGGTACCGTGCCTTCCAAGATAGTCAACCTCAGGTATCTCTACGAGC 656 | ||||| ||||||||||| |||||||||||||||||||||||| |||||||||| || | Sbjct 601 CAAACAATTTTGGAGGTACGGTGCCTTCCAAGATAGTCAACCTCCGGTATCTCTATGAAC 660 Query 657 TCGACATCAGCAACAATCGATTCACCGGTCAGTTTCCGACCGCAGTTGTCGGTATGTCCG 716 ||||||||||||||||| |||||||||||||||||||||| || ||||| || ||||||| Sbjct 661 TCGACATCAGCAACAATAGATTCACCGGTCAGTTTCCGACAGCTGTTGTTGGAATGTCCG 720 Query 717 GTTTGACGTTTCTTGACATCCGGTTCAACTCTTTCTCTGGTTCAATTCCACCACAAATCC 776 ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 721 GTTTGACGTTTATTGACATCCGGTTCAACTCTTTCTCTGGTTCAATCCCACCACAAATCC 780 Query 777 TCGGTCAGAACCTCGAGGTTCTCTTCATCAATGACAATGGCTTCACTGCGAGCCTCCCCG 836 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | Sbjct 781 TCGGTCAGAACCTCGAAGTTCTCTTCATCAATGACAACGGCTTCACTGCGAGCCTCCCGG 840 Query 837 AGATACCTGGTGATGGTACAAGTACAACACACATTCTTTTCTTAACTTTTGCAAACAACA 896 |||||||||||||| | |||||||||||||||| ||||| ||||| |||||||||| Sbjct 841 AGATACCTGGTGAT-G-----GTACAACACACATTCTCTTCTTGACTTTAGCAAACAACA 894 Query 897 AGTTCAACGGTCCTCTGCCGAGAAGCATCTTAAGATCAATGTCAACTTTAACCGAAGTAC 956 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 895 AGTTCAACGGTCCTCTCCCAAGAAGCATCTTAAGATCAATGTCAACTTTAACCGAAGTAC 954 Query 957 TCTTCTTGAATAACGATTTTACCGGTTGTATCCCTCACGAGATCGGGTTCCTCACGGGAG 1016 ||||| | |||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 955 TCTTCCTCAATAACGATTTTACGGGTTGTATCCCTCACGAGATCGGGTTCCTCACCGGAG 1014 Query 1017 CATCAGTGATTGATATTGGTGGAAACAAGCTCACAGGG-CCTTTGCCGCTTTCCCTAATG 1075 |||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 1015 CATCAGTGATCGATATCGGTGGAAACAAGCTCAC-GGGTCCTTTGCCGCTTTCCCTAATG 1073 Query 1076 TGTCTAGAGAAAGTAGAGCAGCTCAACTTTGCTGGGAATCTCTTGTTTGGGGCAATCCCG 1135 ||| ||||||||||||||||||||||||||||||||||||| |||||||| || ||||| Sbjct 1074 TGTTTAGAGAAAGTAGAGCAGCTCAACTTTGCTGGGAATCTATTGTTTGGTGCCGTCCCG 1133 Query 1136 GAGGCAGTTTGCATGCTGCTCCGGGACAATCTTGTCAACTTATCGTTGTCGGATAACTAT 1195 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1134 GAGGCAGTATGCATGCTGCTCCGGGACAATCTTGTCAACTTGTCGTTGTCGGATAACTAT 1193 Query 1196 TTCACGCATGTAGGGCCTTGGTGTAGGGGTTTGCTTGACAGAGGTGTACTTGACGTTAGT 1255 |||||||| ||||||||||||||||||||||| ||||| | |||||| ||||||||| || Sbjct 1194 TTCACGCACGTAGGGCCTTGGTGTAGGGGTTTACTTGAAAAAGGTGTTCTTGACGTTGGT 1253 Query 1256 AACAATTGCATTCCTTTCTTCCCAGGACAAAGATCGATGCAAGAATGCGCGGAGTTCTTT 1315 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1254 AACAATTGCATTCCTTTCTTCCCAGGACAAAGATCGATGCAAGAATGTGCGGAGTTCTTT 1313 Query 1316 GTCAAACCTAAAAAGTACTACTGTCCTCACATGTGGTTCCATAGTTTTTTCTCTTGTAGA 1375 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1314 GTAAAACCTAAGAAGTACTACTGTCCTCACATGTGGTTCCATAGTTTTTTCTCTTGTAGA 1373 Query 1376 TATTCTCACATATCTTCTTCCTCTTCTAGTGCTGTCATGCCCATGGTGGCTCCCTCACCT 1435 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 1374 TATTCTCACATATCTTCTTCCTCTTCTAGTGCTTTCATGCCCATGGTGGCTCCCTCTCCT 1433 Query 1436 TAATGTACAT 1445 |||||| ||| Sbjct 1434 TAATGTTCAT 1443 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72439386435 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5