BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489688
Length=1469
Score E
Sequences producing significant alignments: (Bits) Value
AT4G06744.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 2100 0.0
> AT4G06744.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr4:4070813-4072305 REVERSE LENGTH=1493
Length=1493
Score = 2100 bits (1137), Expect = 0.0
Identities = 1350/1450 (93%), Gaps = 26/1450 (2%)
Strand=Plus/Plus
Query 1 GTTATCATTTTGTATTTTACTTCCCAATGATTTATAAATTTTTATAACGTTTT-ATATTT 59
||||||||||||||||||||||||||||||||| | ||||||||||||||||| | ||||
Sbjct 15 GTTATCATTTTGTATTTTACTTCCCAATGATTTCTCAATTTTTATAACGTTTTGA-ATTT 73
Query 60 CATAAACCTAGTGGCTAGTAG-TAAGAAACTCTCAAGAAACCTACCCACCTaaaaagaga 118
||||||||||||||||||| | || || ||||||||||||||||||||||||||||||||
Sbjct 74 CATAAACCTAGTGGCTAGT-GATATGATACTCTCAAGAAACCTACCCACCTAAAAAGAGA 132
Query 119 gaaaaacaaaacaaaa-aaTAGTAAGGCACAATAAACACTAAGACCACCTCTTCTCTTGT 177
|||||||||||||||| ||||||||||||| |||||||||| || ||| ||||||||||
Sbjct 133 GAAAAACAAAACAAAAGAATAGTAAGGCAC--TAAACACTAAAACTACCACTTCTCTTGT 190
Query 178 ATCGCCGACAAAGTTTTGTTCAGTGGCAAAGATGAAGAATCCTTTGCTTTTGGCTCTTTT 237
||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 191 ATCGCCGACAAAGCTTTGTTCAGTGGCAAAGATGATGAATCATTTGCTTTTGGCTCTTTT 250
Query 238 CCTTGTTGGCACCGTCGCTTTACCAGATAGAAGCAGCAGAGGAACTCAAGAATTGACCAA 297
||||||||| ||| |||| ||||||||| |||||||||||| ||||||||||
Sbjct 251 CCTTGTTGGAACCATCGCCTTACCAGAT---------AGAGGAACTCAACAATTGACCAA 301
Query 298 CGATGGCCTCACCGGCACGAGTCAAGCA-ATACTCTCTTTCTTTGACCAAAGACTTGCAG 356
|||||||||||||||| |||| | || | |||||||||||||| ||||||||||||||||
Sbjct 302 CGATGGCCTCACCGGCGCGAGGCGAG-AGATACTCTCTTTCTTAGACCAAAGACTTGCAG 360
Query 357 TGGTGTACCCAGTGATCCAGAGATTCAAGTCACTCATCACTCTCGACCCTTATAACGTAA 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 TGGTGTACCCAGTGATCCAGAGATTCAAGTCACTCATCACTCTCGACCCTTATAACGTGA 420
Query 417 CCAAGACATGGATTGGTTCAGACATCTGTAGTTATAGAGGCTTCCACTGTGACAATCCTC 476
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 421 CCAAGACATGGATTGGTTCAGACATCTGCAGTTATAGAGGCTTCCACTGTGACAATCCTC 480
Query 477 CGGACAACACAACCGCAGTTACTGTCGCTTCTATCGATTTCAATGGCTTTCAGCTCTCTG 536
| |||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 481 CTCACAACAAAACCGCAGTTACTGTTGCTTCCATCGATTTCAATGGCTTTCAGCTCTCTG 540
Query 537 CTCCCTCCATCGAAGGATTTATCGATCAATTCCCTGACTTAGCTCTGTTTCATGTTAACT 596
|||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 541 CTCCATCCATCGAAGGATTTATCGATCAATTCGCTGACCTAGCTCTGTTTCATGTTAACT 600
Query 597 CCAACAACTTTGGAGGTACCGTGCCTTCCAAGATAGTCAACCTCAGGTATCTCTACGAGC 656
| ||||| ||||||||||| |||||||||||||||||||||||| |||||||||| || |
Sbjct 601 CAAACAATTTTGGAGGTACGGTGCCTTCCAAGATAGTCAACCTCCGGTATCTCTATGAAC 660
Query 657 TCGACATCAGCAACAATCGATTCACCGGTCAGTTTCCGACCGCAGTTGTCGGTATGTCCG 716
||||||||||||||||| |||||||||||||||||||||| || ||||| || |||||||
Sbjct 661 TCGACATCAGCAACAATAGATTCACCGGTCAGTTTCCGACAGCTGTTGTTGGAATGTCCG 720
Query 717 GTTTGACGTTTCTTGACATCCGGTTCAACTCTTTCTCTGGTTCAATTCCACCACAAATCC 776
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 721 GTTTGACGTTTATTGACATCCGGTTCAACTCTTTCTCTGGTTCAATCCCACCACAAATCC 780
Query 777 TCGGTCAGAACCTCGAGGTTCTCTTCATCAATGACAATGGCTTCACTGCGAGCCTCCCCG 836
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 781 TCGGTCAGAACCTCGAAGTTCTCTTCATCAATGACAACGGCTTCACTGCGAGCCTCCCGG 840
Query 837 AGATACCTGGTGATGGTACAAGTACAACACACATTCTTTTCTTAACTTTTGCAAACAACA 896
|||||||||||||| | |||||||||||||||| ||||| ||||| ||||||||||
Sbjct 841 AGATACCTGGTGAT-G-----GTACAACACACATTCTCTTCTTGACTTTAGCAAACAACA 894
Query 897 AGTTCAACGGTCCTCTGCCGAGAAGCATCTTAAGATCAATGTCAACTTTAACCGAAGTAC 956
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 895 AGTTCAACGGTCCTCTCCCAAGAAGCATCTTAAGATCAATGTCAACTTTAACCGAAGTAC 954
Query 957 TCTTCTTGAATAACGATTTTACCGGTTGTATCCCTCACGAGATCGGGTTCCTCACGGGAG 1016
||||| | |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 955 TCTTCCTCAATAACGATTTTACGGGTTGTATCCCTCACGAGATCGGGTTCCTCACCGGAG 1014
Query 1017 CATCAGTGATTGATATTGGTGGAAACAAGCTCACAGGG-CCTTTGCCGCTTTCCCTAATG 1075
|||||||||| ||||| ||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1015 CATCAGTGATCGATATCGGTGGAAACAAGCTCAC-GGGTCCTTTGCCGCTTTCCCTAATG 1073
Query 1076 TGTCTAGAGAAAGTAGAGCAGCTCAACTTTGCTGGGAATCTCTTGTTTGGGGCAATCCCG 1135
||| ||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 1074 TGTTTAGAGAAAGTAGAGCAGCTCAACTTTGCTGGGAATCTATTGTTTGGTGCCGTCCCG 1133
Query 1136 GAGGCAGTTTGCATGCTGCTCCGGGACAATCTTGTCAACTTATCGTTGTCGGATAACTAT 1195
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1134 GAGGCAGTATGCATGCTGCTCCGGGACAATCTTGTCAACTTGTCGTTGTCGGATAACTAT 1193
Query 1196 TTCACGCATGTAGGGCCTTGGTGTAGGGGTTTGCTTGACAGAGGTGTACTTGACGTTAGT 1255
|||||||| ||||||||||||||||||||||| ||||| | |||||| ||||||||| ||
Sbjct 1194 TTCACGCACGTAGGGCCTTGGTGTAGGGGTTTACTTGAAAAAGGTGTTCTTGACGTTGGT 1253
Query 1256 AACAATTGCATTCCTTTCTTCCCAGGACAAAGATCGATGCAAGAATGCGCGGAGTTCTTT 1315
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1254 AACAATTGCATTCCTTTCTTCCCAGGACAAAGATCGATGCAAGAATGTGCGGAGTTCTTT 1313
Query 1316 GTCAAACCTAAAAAGTACTACTGTCCTCACATGTGGTTCCATAGTTTTTTCTCTTGTAGA 1375
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 GTAAAACCTAAGAAGTACTACTGTCCTCACATGTGGTTCCATAGTTTTTTCTCTTGTAGA 1373
Query 1376 TATTCTCACATATCTTCTTCCTCTTCTAGTGCTGTCATGCCCATGGTGGCTCCCTCACCT 1435
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1374 TATTCTCACATATCTTCTTCCTCTTCTAGTGCTTTCATGCCCATGGTGGCTCCCTCTCCT 1433
Query 1436 TAATGTACAT 1445
|||||| |||
Sbjct 1434 TAATGTTCAT 1443
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72439386435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5