BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489689
Length=544
Score E
Sequences producing significant alignments: (Bits) Value
AT4G06746.1 | Symbols: RAP2.9, DEAR5 | related to AP2 9 | chr4:... 785 0.0
AT4G36900.1 | Symbols: RAP2.10, DEAR4 | related to AP2 10 | chr... 143 2e-33
> AT4G06746.1 | Symbols: RAP2.9, DEAR5 | related to AP2 9 | chr4:4073962-4074545
REVERSE LENGTH=584
Length=584
Score = 785 bits (425), Expect = 0.0
Identities = 507/546 (93%), Gaps = 7/546 (1%)
Strand=Plus/Plus
Query 1 ATGGTGATTGAATACAAACGAAAACAAGACTTTCCTATGGTGAAAGAAGGAATGGTCATG 60
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGATTCAATACAAACGAAAACAAGAGTTTCCTATGGTGAAAGAAGGAATGGTCATG 60
Query 61 AACGAGAAGCCAAAGAGGAATCTCATGAGCCCCAATGAGAAGCGATACAAAGGGATAAGG 120
| |||||||||||||||||||||||| ||| | |||||||||||||||||||| ||||||
Sbjct 61 ACCGAGAAGCCAAAGAGGAATCTCATAAGCTCTAATGAGAAGCGATACAAAGGAATAAGG 120
Query 121 ATGAGGAAGTGGGGGAAGTGGGTGGCTGAGATAAGAGAGCCTAACAAACGATCACGGATC 180
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 ATGAGGAAGTGGGGCAAGTGGGTGGCTGAGATAAGAGAGCCTAATAAACGATCACGGATC 180
Query 181 TGGCTTGGTTCTTACAAAACCGCGGTTGCAGCGGCACGTGCCTATGACACCGCTGTGTTT 240
||||||||||| ||||||||||| ||||| |||||||| ||||| || ||||||||||||
Sbjct 181 TGGCTTGGTTCATACAAAACCGCCGTTGCCGCGGCACGGGCCTACGATACCGCTGTGTTT 240
Query 241 TATTTACGTGGTCCATCGGCGAGACTCAATTTCCCCGAACAGGTC-TTACAAGATGGAAA 299
|| ||||||||||| |||||||||||||||||||| ||| ||||| ||| | ||||||||
Sbjct 241 TACTTACGTGGTCCTTCGGCGAGACTCAATTTCCCTGAAGAGGTCTTTA-AGGATGGAAA 299
Query 300 CGGCGGTGAAGG-TGTAGGAGGAGACATGTCTGCGACGTTGATACGGCAGAAGGCGGCGG 358
|||||||||||| | |||||||||| |||||| |||||||||||||| |||||||||| |
Sbjct 300 CGGCGGTGAAGGCT-TAGGAGGAGATATGTCTCCGACGTTGATACGGAAGAAGGCGGCTG 358
Query 359 AGGTGGGAGCTAGAGTCGACGCGGAACTGCGGTTAGAGAATACGATGGTTGAGAAATTAG 418
|||||||||||||||||||||| || ||||||||||||||| |||||||||||| ||||
Sbjct 359 AGGTGGGAGCTAGAGTCGACGCAGAGTTGCGGTTAGAGAATAGGATGGTTGAGAACTTAG 418
Query 419 ACATTAATAAGTTGCCGGAGGCATATGGATTGTAATTTTTTATAGTTTGGTAGTTTATAG 478
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 419 ACATGAATAAGTTGCCGGAGGCATATGGATTGTAA---TTTATAGTTTGGTAGTTTATAG 475
Query 479 GTTGGAGATTGCCCGGAGACAGAGTTAAACAGAGGTTCTCTGACTCATATGAGGCTTAAT 538
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 476 GTTGGAGATTGCCCGGAGACAGAGTCAAACAGAGGTTCTCTGACTCATATGAGGCATAAT 535
Query 539 ATAGTT 544
||||||
Sbjct 536 ATAGTT 541
> AT4G36900.1 | Symbols: RAP2.10, DEAR4 | related to AP2 10 | chr4:17388814-17389837
FORWARD LENGTH=1024
Length=1024
Score = 143 bits (77), Expect = 2e-33
Identities = 124/147 (84%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 109 AAAGGGATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCTGAGATAAGAGAGCCTAACAAA 168
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 292 AAAGGGATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCGGAGATAAGAGAGCCTAATAAA 351
Query 169 CGATCACGGATCTGGCTTGGTTCTTACAAAAC-CGCGGTTGCAGCGGCACGTGCCTATGA 227
| ||| ||||||||||||| |||||| || | | | || ||||| ||||| || ||
Sbjct 352 AGGTCAAGGATCTGGCTTGGCTCTTACTCTACTC-CTGAAGCGGCGGCGCGTGCTTACGA 410
Query 228 CACCGCTGTGTTTTATTTACGTGGTCC 254
||| || ||||||||| | || |||||
Sbjct 411 CACGGCGGTGTTTTATCTCCGAGGTCC 437
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26071522293
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5