BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489694
Length=2562
Score E
Sequences producing significant alignments: (Bits) Value
AT4G07960.1 | Symbols: ATCSLC12, CSLC12 | Cellulose-synthase-li... 3692 0.0
AT3G07330.1 | Symbols: ATCSLC06, CSLC06, ATCSLC6, CSLC6 | Cellu... 359 8e-98
> AT4G07960.1 | Symbols: ATCSLC12, CSLC12 | Cellulose-synthase-like
C12 | chr4:4802341-4805647 REVERSE LENGTH=2622
Length=2622
Score = 3692 bits (1999), Expect = 0.0
Identities = 2270/2400 (95%), Gaps = 22/2400 (1%)
Strand=Plus/Plus
Query 181 AAAACAAAAATGGCACCAAAGTTTGAATGGTGGGCTAAAGGAAACAACAACAACAAC-CG 239
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 227 AAAAAAAAAATGGCACCAAAGTTTGAATGGTGGGCTAAAGGAAACAACAACAAC-ACTCG 285
Query 240 TAAAGGAACACCAGTCGTCGTCAAAATGGAAAACCCTAATAACTGGTCAATGGTGGAACT 299
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 286 TAAAGGAACACCAGTCGTTGTCAAAATGGAAAACCCTAATAACTGGTCAATGGTGGAACT 345
Query 300 TGAATCACCTTCTCATGACGATTTCCTCGTAAGAACTCATGAGAAATCTCGTAACAAGAA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 TGAATCACCTTCTCATGACGATTTCCTCGTAAGAACTCATGAGAAATCTCGTAACAAGAA 405
Query 360 CGCAAGACAGCTCACTTGGGTTCTACTTCTTAAAGCTCACCGTGCCGCAGGTTGTCTCAC 419
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 406 CGCAAGACAGCTCACTTGGGTTCTACTTCTCAAAGCTCATCGTGCCGCAGGTTGTCTCAC 465
Query 420 TTCTCTCGGTTCTGCATTAATCGCTCTCGGCACTGCCGTACGCCGCCGTATCGCCGCCGG 479
||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||
Sbjct 466 TTCTCTCGGTTCTGCATTATTCGCTCTCGGCACCGCCGTGCGCCGCCGTATCGCCGCCGG 525
Query 480 CCGTACAGACACTGAAATCTCCTCCTC----CTCCGG---AGTACAGAAGCAAAACCCTG 532
||||||||||| ||||||||||||||| | || | ||||||||||||||| |
Sbjct 526 CCGTACAGACATTGAAATCTCCTCCTCGGGAGT-GGGTTCATTACAGAAGCAAAACCATA 584
Query 533 CGAAAAAATCGAAACTTTTTTACTCTTGCTTAAAGGTGTTTCTATGGCTTTCTTTAATCC 592
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 585 CGAAGAAATCGAAACTTTTCTACTCTTGCTTAAAGGTGTTTCTATGGCTTTCTTTAATCC 644
Query 593 TTTTGGGTTTTGAGATTGCTGCTTATTTCAAAGGTTGGCA-CTTTGGAACTTCTAAGCTT 651
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 645 TTTTGGGTTTTGAGATTGCTGCTTATTTCAAAGGTTGG-AGCTTTGGAACTTCTAAGCTT 703
Query 652 CAGCTTCAGTTTATCTTCAATAAAGGATTCTTTGATTGGGTTTACACGAGATGGGTTTTG 711
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 704 CAGCTTCAGTTTATCTTCAATAAAGGGTTCTTTGATTGGGTTTACACGAGATGGGTTTTG 763
Query 712 CTTCGTGTTGAGTATCTTGCTCCTCCGCTTCAGTTTCTTGCTAATGGCTGCATCGTTCTG 771
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 764 CTTCGTGTTGAGTATCTTGCTCCTCCTCTTCAGTTTCTTGCTAATGGCTGCATTGTTCTG 823
Query 772 TTTCTTGTTCAGAGTCTTGATAGACTCATTCTTTGTCTTGGTTGTTTTTGGATCCG-TTT 830
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 824 TTTCTTGTTCAGAGTCTTGATAGACTCATTCTTTGTCTTGGTTGTTTTTGGATCCGGTTT 883
Query 831 CAAGAAGATTAAACCGGTTCCTAAACCAGATTCTATCTCTGATCTTGAATCTGGTGACAA 890
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 884 -AAGAAGATTAAACCGGTTCCTAAACCGGATTCTATCTCTGATCTTGAATCTGGTGATAA 942
Query 891 TGGTGCCTTCCTCCCTATGGTTCTTGTTCAAATCCCTATGTGTAATGAGAAAGAGGTTTA 950
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 TGGTGCTTTCCTCCCTATGGTTCTTGTTCAAATCCCTATGTGTAATGAGAAAGAGGTTTA 1002
Query 951 TCAGCAATCAATTGCTGCTGTTTGTAACTTAGACTGGCCAAAAGGGAAGATTTTGATTCA 1010
||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1003 TCAGCAATCTATTGCAGCTGTGTGTAACTTAGACTGGCCTAAAGGGAAGATTTTGATTCA 1062
Query 1011 AATTCTTGACGATTCGGATGATCCGATAACGCAGAGTTTGATTAAAGAAGAGGTTCATAA 1070
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 AATTCTCGATGATTCGGATGATCCGATAACGCAGAGTTTGATTAAAGAAGAGGTTCATAA 1122
Query 1071 ATGGCAGAATCAAGGTGCACGCATTGTGTATCGTCACCGTGTTAACAGAGAAGGTTACAA 1130
||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1123 ATGGCAGAAGCTAGGTGCACGCATTGTGTATCGTCACCGTGTTAATAGAGAAGGTTACAA 1182
Query 1131 AGCTGGTAATCTTAAGTCTGCTATGAACTGTAGTTATGTTAAAGACTACGAATTCGTCGC 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1183 AGCTGGTAATCTTAAGTCTGCTATGAACTGTAGTTATGTTAAAGACTACGAATTCGTTGC 1242
Query 1191 GATTTTCGACGCTGATTTTCAACCTCTACCTGATTTCCTCAAAAAGACAATTCCTCATTT 1250
|||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1243 GATTTTCGACGCAGATTTTCAACCTCTACCTGATTTCCTCAAGAAGACCATTCCTCATTT 1302
Query 1251 TAAGGATAATGAGGAACTAGGATTGGTTCAAGCGAGGTGGTCCTTTGTGAATAAGGAAGA 1310
|||||| ||||||||| |||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1303 TAAGGACAATGAGGAAATAGGATTGGTTCAAGCTAGGTGGTCTTTTGTGAATAAGGAAGA 1362
Query 1311 GAATTTGTTGACACGATTACAGAACATTAACTTGGCTTTTCACTTTGAGGTTGAGCAGCA 1370
||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1363 GAACTTGTTGACAAGATTACAGAATATTAACTTGGCTTTTCACTTTGAGGTTGAGCAACA 1422
Query 1371 AGTGAATAGCGTCTTCTTGAATTTCTTTGGATTCAATGGAACAGCCGGTGTCTGGAGGAT 1430
||||||||| ||||||||||||||||| || || || || ||||||||||| ||||||||
Sbjct 1423 AGTGAATAGTGTCTTCTTGAATTTCTTCGGGTTTAACGGGACAGCCGGTGTGTGGAGGAT 1482
Query 1431 CAAAGCTTTGGAAGATTCTGGTGGTTGGCTCGAGAGAACTACCGTCGAGGATATGGACAT 1490
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 CAAAGCTTTGGAAGATTCCGGTGGTTGGCTCGAGAGAACTACCGTCGAGGATATGGACAT 1542
Query 1491 TGCTGTTCGTGCTCACCTTCATGGATGGAAATTCATTTTCCTAAACAACGTTGAGTGCCA 1550
||| ||||||||||||||||| |||||||||||| |||||||||| |||||||||||||
Sbjct 1543 TGCGGTTCGTGCTCACCTTCACGGATGGAAATTCGTTTTCCTAAATGACGTTGAGTGCCA 1602
Query 1551 ATGTGAATTACCGGAATCGTATGAAGCTTACAGAAAACAGCAACATAGATGGCATTCAGG 1610
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1603 ATGTGAATTACCGGAATCGTATGAAGCTTATAGAAAACAGCAACATAGATGGCATTCAGG 1662
Query 1611 ACCTATGCAACTATTTCGCCTTTGTTTGCCGGCTGTCATTAAATCAAAGATAAGCATAGG 1670
||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 1663 TCCTATGCAACTATTTCGTCTTTGTTTGCCCGCGGTCATTAAATCAAAGATAAGCATAGG 1722
Query 1671 AAAGAAATTCAATCTGATATTCCTCTTCTTCCTCCTGAGGAAGCTTATCTTGCCATTCTA 1730
||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1723 AAAGAAATTCAATTTGATATTCCTCTTCTTTCTCCTGAGGAAGCTAATCTTGCCATTCTA 1782
Query 1731 CTCATTTACCCTCTTTTGTATTATCCTGCCAATGACTATGTTTGTACCCGAGGCTGAGCT 1790
|||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1783 CTCATTCACTCTCTTTTGTATTATCCTGCCAATGACTATGTTTGTACCCGAAGCTGAGCT 1842
Query 1791 TCCCGCTTGGGTTGTTTGCTACATACCTGCCACAATGTCGTTCCTCAACATCCTTCCCGC 1850
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1843 TCCCGCTTGGGTTGTTTGCTACATACCTGCCACAATGTCTTTCCTCAACATCCTTCCCGC 1902
Query 1851 CCCGAAGTCATTTCCGTTTATAGTCCCGTACCTTCTCTTTGAGAACACAATGTCTGTGAC 1910
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1903 CCCGAAGTCGTTTCCGTTTATCGTCCCGTACCTTCTCTTTGAGAACACAATGTCTGTGAC 1962
Query 1911 CAAGTTCAACGCAATGGTCTCGGGTCTATTTCAGCTAGGAAGTGCTTATGAATGGGTTGT 1970
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1963 TAAGTTCAACGCAATGGTCTCGGGTTTGTTTCAGCTAGGAAGTGCTTATGAATGGGTTGT 2022
Query 1971 TACaaaaaaaTCTGGACGATCATCGGAAGGCGATCTTGCTGCTTTAGTTGAAAAAGACGA 2030
|||||||||||| ||||| ||||| ||||| ||||||||||| ||||| |||||||||||
Sbjct 2023 TACAAAAAAATCAGGACGGTCATCAGAAGGAGATCTTGCTGCGTTAGTCGAAAAAGACGA 2082
Query 2031 AAAGAAAACGAAACATCAGAGAGGTGTGTCTGCACCCGAAACCGAAGCCGagaaaaaggc 2090
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2083 AAAGACAACTAAACATCAGAGAGGTGTGTCTGCACCCGAAACCGAAGCCGAGAAAAAGGC 2142
Query 2091 ggaaaagacaaagaaaaagaagaagaagCACAATAGGATATATATGAAGGAGCTATCACT 2150
||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2143 GGAAAAGACTAAGAGGAAGAAGAAGAAGCACAATAGGATTTATATGAAGGAGCTATCTCT 2202
Query 2151 AGCGTTTCTGTTACTGACTGCAGCAACTCGAAGTCTTTTATCGGCGCAAGGAATCCATTT 2210
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 2203 AGCGTTTCTGTTACTGACCGCGGCAACTCGAAGTCTTTTATCGGCGCAAGGAATCCATTT 2262
Query 2211 TTACTTCCTCTTGTTTCAAGGAATCTCCTTCTTACTTGTTGGTCTAGATCTAATTGGAGA 2270
|||||||| |||||||||||||| || ||||||||||| ||||||||||| ||||||||
Sbjct 2263 CTACTTCCTTTTGTTTCAAGGAATATCTTTCTTACTTGTGGGTCTAGATCTTATTGGAGA 2322
Query 2271 GCAAGTTGAATGACACTCAAAGAGACTGAAGTAGTGCTTGTAGAAGAGACGTTGTAGAAG 2330
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2323 ACAAGTTGAATGACACTCAAAGAGATTGAAGTAGTGCTTGTAGAAGAGACGTTGTAGAAG 2382
Query 2331 ACAGGAA-CATGAAGAGAAGAAGGAA-AGGGTCTGGACCCAAAAGAATACAATACATCAT 2388
||||||| ||||||||||| |||||| ||||||||||||||||| ||||||||||| |||
Sbjct 2383 ACAGGAAACATGAAGAGAAAAAGGAAGAGGGTCTGGACCCAAAAAAATACAATACAACAT 2442
Query 2389 TGAACATAGATCGGTTTCACTAAGGAAGGACATGAATTAACTCTGT-GGTA---A-TGTG 2443
||||||||||||||||||| | |||||||||||| ||||||||||| |||| | ||||
Sbjct 2443 TGAACATAGATCGGTTTCATTGAGGAAGGACATGGATTAACTCTGTTGGTAGTGAATGTG 2502
Query 2444 TAAGGTTTTAACTTTTCTTTCTTTTGGGTTTGGCCACAGTTGTTTATTCTTTCGTTTAA- 2502
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 2503 TAAGGTTTTAACTTTTCTCTCTTTTGGGTTTGCCCACAGTTGTTTATTCTTTCGATTAAA 2562
Query 2503 TGGGGACAATTCTTTTGTAAGAAAGTCTTGTTCAATTAAGAAAGCAAATTATTTTAGCTC 2562
||||||||| |||||||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct 2563 TGGGGACAACTCTTTTGTAAGAAAGTTTTGTTCAATTATGAAAGCAAATTGTTTTAGCTC 2622
Score = 189 bits (102), Expect = 1e-46
Identities = 161/188 (86%), Gaps = 9/188 (5%)
Strand=Plus/Plus
Query 1 CGCGTGTGATCATTAACTCGAGGTAAATTCTCTAATCCCAGTTAATATCACACGCGGAAT 60
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 CGCGTGTGATTATTAACTCGAGGTAATTTCTCTAATCCCAGTTAATATCACACGCGGAAT 60
Query 61 ATCAAAGATCCGATTT---GTA--CATTGTACCAACATCAG-AGGAGGTT-TAAAGTGGA 113
|||||||||| ||||| ||| ||||||||||| |||| || || || ||| |||||
Sbjct 61 ATCAAAGATCTGATTTTTTGTAAACATTGTACCAAAATCATCAGAAGATTATAA-GTGGA 119
Query 114 GTATTTGGAAGAACAACAAAGCCAATAACACGCGTCTCCTTCAATCCTCTCGCTGTCAAT 173
|| ||| |||||| |||||| |||||||||||||| |||||| ||| |||| ||||
Sbjct 120 GTCTTTCGAAGAAGAACAAATTTG-TAACACGCGTCTCCATCAATCTTCTAGCTGGCAAT 178
Query 174 GAGATCCA 181
||||||||
Sbjct 179 GAGATCCA 186
> AT3G07330.1 | Symbols: ATCSLC06, CSLC06, ATCSLC6, CSLC6 | Cellulose-synthase-like
C6 | chr3:2335612-2339100 REVERSE LENGTH=2716
Length=2716
Score = 359 bits (194), Expect = 8e-98
Identities = 777/1048 (74%), Gaps = 82/1048 (8%)
Strand=Plus/Plus
Query 907 ATGGTTCTTGTTCAAATCCCTATGTGTAATGAGAAA-GAGGTTTATCAGCAATCAATTGC 965
||||| ||||||| || |||||||| ||||| ||| |||||||| || ||||| || |
Sbjct 822 ATGGTGATTGTTCAGATTCCTATGTGCAATGA-AAAGGAGGTTTACCAACAATCTATAGG 880
Query 966 TGCTGTTTGTA-ACTTAGACTGGCCAAAAGGG-AAG-AT-TTTGATTCAAATTCTTGACG 1021
||||| |||| ||| |||||||| ||||| ||| || | | |||| ||||||| |
Sbjct 881 AGCTGTGTGTATGCTT-GACTGGCC--AAGGGAAAGAATGCTAG-TTCAGGTTCTTGATG 936
Query 1022 A-TTCGGATG-ATCCGATAACGCAG-AGTTTGATTAAAGAAGAGGTTCATAAATGGCAGA 1078
| | | | || || ||| ||| || || || |||| || || || ||||||| |
Sbjct 937 ACTCCAG-TGAATTGGAT-GTTCAGCAGCTT-ATAAAAGCGGAAGTACAAAAATGGC--A 991
Query 1079 ATC-AA--GGTGCACGCATTGTGTATCGTCACCGTGTTA-ACAGAGA-AGGTTACAAAGC 1133
| | || |||| || || |||||| | || ||| | | || | | |||||||| ||
Sbjct 992 A-CAAAGGGGTGTTCGGATAGTGTATAGACATCGTCTCATAC-G-TACTGGTTACAAGGC 1048
Query 1134 TGGTAATCTT-AAGTCTGCTATGAACTGTAG-TTATGTTAAAGACTACGAATTCGTCGCG 1191
||| || ||| ||| |||| ||||||||| | ||||| ||||||||||| || |||||
Sbjct 1049 TGGAAACCTTAAAG-CTGCAATGAACTGT-GAATATGTCAAAGACTACGAGTTTGTCGCC 1106
Query 1192 AT-TTTCGACGCTGATTTTCAACC-TCTACCTGATTTCCTCAA-AAAGACAATTCCTCAT 1248
|| ||| || || ||||| || || || | |||||| | || ||| || | ||||||
Sbjct 1107 ATATTT-GATGCAGATTTCCAGCCACCT-GCGGATTTCTTGAAGAAA-ACTGTGCCTCAT 1163
Query 1249 TTTAAGGATAATGAGGAACTAGGATTGGTTCAAGCGA-GGTGGTCCTTTGTGAATAAGGA 1307
||||||| |||||| ||| ||| ||||| ||| | | ||||| | |||||||| || ||
Sbjct 1164 TTTAAGGGTAATGAAGAATTAGCCTTGGTCCAAAC-ACGGTGGGCTTTTGTGAACAAAGA 1222
Query 1308 AGAGAATTTG-TTGACACGATTACAGAACATTAACTTGGCTTTTCACTTTGAGGTTGAGC 1366
|| || ||| || ||| || | |||||||| || ||| |||| |||||||| ||||| |
Sbjct 1223 CGAAAACTTGCTT-ACAAGACTCCAGAACATAAATTTGTCTTTCCACTTTGAAGTTGAAC 1281
Query 1367 AGCAAGTGAATAGCG-TCTTCTTGAATTTCTTTGGATTCAATGGAACAGCCGGTGTCTGG 1425
|||| || ||| | | | || || || |||||||| || |||||||| || ||||| |||
Sbjct 1282 AGCAGGTCAATGGTGTTTTTATT-AACTTCTTTGGCTTTAATGGAACTGCTGGTGTTTGG 1340
Query 1426 AGGATCAAAGCTTTGGAAGATT-CTGGTGGTTGGCTCGAGAGAACTACCGTCGAGGATAT 1484
|| |||||||| | || |||| | || || ||| | ||| |||| || || ||||| ||
Sbjct 1341 AGAATCAAAGCCCTCGAGGATTGC-GGGGGATGGTTGGAGCGAACAACTGTTGAGGACAT 1399
Query 1485 GGACATTGCTGTTCGTGCTCACCTTCATGGATGGAAATTCATTT-TCCTAAACAACGTTG 1543
||| ||||| |||||||| || ||| ||||||||| ||||||| | || || | |||
Sbjct 1400 GGATATTGCCGTTCGTGCGCATCTTTGTGGATGGAAGTTCATTTAT-CTGAATGATGTTA 1458
Query 1544 AGTGCCAATGTGAA-TTACCGGAATCGTATGAAGCTTACAGAAAACAGCAACATAGATGG 1602
|||| | |||||| || ||||| || ||||| || || | |||||||||| | | |||
Sbjct 1459 AGTGTCTCTGTGAACTT-CCGGAGTCCTATGAGGCATATAAAAAACAGCAATACCGCTGG 1517
Query 1603 CATTCAGGACCTATGCAACTATTTCGCCTTTGT--TTGC--CGGC-TGTCATTAAATCAA 1657
||||| || || |||||||| ||| | ||||| || | | | | || || ||||
Sbjct 1518 CATTCGGGTCCAATGCAACT-GTTC-CGTTTGTGCTT-CTTTGACAT-TC-TTCGGTCAA 1572
Query 1658 AGAT-A-AGCATAGGAAAGAAATTC-AATCTGATATTCCTCTTCTTCCTCCTGA-GGAAG 1713
|| | | || | | |||||| | ||| ||||||| ||||||||| | || | |||||
Sbjct 1573 AGGTGAGTGC-T-GCCAAGAAA-GCAAATATGATATTTCTCTTCTTCTTGCT-ACGGAAG 1628
Query 1714 CTTATCTTGCCATTCTACTCATTTACCCTCTTTTGTATTATCCTGCCAATGACTATGTT- 1772
||||||||||||||||||||||| || ||||| || | || || ||| | || |||||
Sbjct 1629 CTTATCTTGCCATTCTACTCATTCACGCTCTTCTGCGTCATTCTTCCATTAACGATGTTC 1688
Query 1773 TGTACCC-GAGGCTGAGCTTCCCG-CTTGGGTTGTTTGCTACATACCTGCCA-CAATGTC 1829
| | ||| |||||| | ||| || |||||||||||||||| || |||| | || ||||
Sbjct 1689 T-T-CCCAGAGGCTAA-CTTACCATCTTGGGTTGTTTGCTATATCCCTGGGATCA-TGTC 1744
Query 1830 GTTCCTCAACATCCTTCCC-GCCCCGAAG-TCATTTCCGTTT-ATAGTCCCGTACCTTCT 1886
|| | |||||| | ||| ||||| ||| || || || ||| ||||| ||||| || ||
Sbjct 1745 CATCTTAAACATCAT-CCCAGCCCC-AAGATCCTTCCC-TTTCATAGTTCCGTATCTCCT 1801
Query 1887 CTTT-GAGAACACAATGTCTGTGACCAA 1913
||| || ||||| ||||| || |||||
Sbjct 1802 -TTTCGAAAACACCATGTCAGTTACCAA 1828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127173200505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5