BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489695
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60090.1 | Symbols: | Protein kinase superfamily protein | ... 699 0.0
AT5G60080.1 | Symbols: | Protein kinase superfamily protein | ... 226 4e-58
> AT5G60090.1 | Symbols: | Protein kinase superfamily protein
| chr5:24196082-24197725 REVERSE LENGTH=1197
Length=1197
Score = 699 bits (378), Expect = 0.0
Identities = 497/554 (90%), Gaps = 9/554 (2%)
Strand=Plus/Plus
Query 179 GAGTATCATTTCTATGGCGCGAACTCGTAGACGGAACAATAAACTTCCGGGACGAATATT 238
||| ||||||||||||||| || |||||| ||||||| ||||||||||||||||||| ||
Sbjct 218 GAGAATCATTTCTATGGCGTGAGCTCGTAAACGGAACCATAAACTTCCGGGACGAAT-TT 276
Query 239 T-TCTCGGCAAAGGCAACTTCGGCGAAGTCTATCGCTGCCGTTTCTCAAGACTTAATGAG 297
| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 277 TATCTCGGCAAAGGCAACTTCGGCGAAGTCCATCGCTGCTATTTCTCAAGACTTAATGTG 336
Query 298 GATGGAGCCGTGAAGATTCAAAAACCAGACAATCCAACTGGTCATGTTGAGTTCTTGGCA 357
|||||||| || ||| ||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 337 GATGGAGCGGTAAAGGTTCAAAATCCACAGAATCCAACTGGTCATGTTGAGTTCTTGGCA 396
Query 358 GAGGTTACAACGTTACATGCAGCTAATCACCCAAATGTGATTAGACTTCTTGGCAATTGT 417
|||||||||||||||| |||| ||||||| |||||||||||||||||||||||||| |||
Sbjct 397 GAGGTTACAACGTTACGTGCAACTAATCATCCAAATGTGATTAGACTTCTTGGCAACTGT 456
Query 418 TACGGCCAAAGGAACCGTGCTATAGTCTACGAATTCATGCCCAATGGCTG-TCTTGAGCC 476
|||||||||||||||||||||||| | |||||||||||| |||| || | ||||||||
Sbjct 457 TACGGCCAAAGGAACCGTGCTATAATTTACGAATTCATGGCCAACGGA-GATCTTGAGCG 515
Query 477 TCACATCTTTGCACACGCGACGAGGGTGCAGGGTCAGTTACCTCAGGGTCTA-CAACTAC 535
|||||||||||||||| |||| |||| |||||| | |||| |||||||| || ||||
Sbjct 516 TCACATCTTTGCACACAAAACGATGGTGGAGGGTCCGCGACCTAAGGGTCTAACA-CTAC 574
Query 536 CAATTAGGGTTTTGGATTGGGATACGAGGATGAGAATTGCTTTGGGTGTAGCCAAGGGTC 595
|||||||||||||||||||| | |||||||||| ||||||| |||||||||||||||| |
Sbjct 575 CAATTAGGGTTTTGGATTGGTACACGAGGATGAAAATTGCTGTGGGTGTAGCCAAGGGCC 634
Query 596 TGGTTTATCTACACCAGGAGCTGAAAGTGATTAACCGAGATGTCAAAGCCGGAAATAT-T 654
|||||||||||||| |||||||||||||||||||| |||||||||| |||||||| || |
Sbjct 635 TGGTTTATCTACACGAGGAGCTGAAAGTGATTAACAGAGATGTCAAGGCCGGAAACATAT 694
Query 655 CTACTTGATGCAAATTTTGTGCCGAAGCTGACTGATTTTGGATTGGCGACTAAAATCGAT 714
||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |
Sbjct 695 -TACTTGATGCAGATTTTGTTCCGAAGCTGACAGATTTTGGATTGGCGACTAAAATCGTT 753
Query 715 GTAGATGAAA-CGG 727
| |||||||| |||
Sbjct 754 GAAGATGAAAACGG 767
Score = 536 bits (290), Expect = 2e-151
Identities = 370/408 (91%), Gaps = 7/408 (2%)
Strand=Plus/Plus
Query 718 GATGAAACGGGATCTTTGGGATACATTGCACCGGAAGGAGAGATTTCCCGGTTGGTTTCG 777
|||| || || |||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 795 GATG-AA-GGCATCTATGGGATACATTGCACCGGAAGGAGAGATTTCCTGGTTGGTTTCG 852
Query 778 ACTAAGACTGATGTCTATAGCTATGGAGCTCTTCTTTTAGTGCTTTTCACCGGAAGGCAG 837
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
Sbjct 853 ACTAAGACTGATGTCTATAGCTATGGAGCTTTTCTGTTAGTGCTTTTCACCGGAAGGAAA 912
Query 838 CCTTTTTATTCGAAGAAACCTGTTGGGAAAAAGAATCTCACTGACTGGTTTATAAGAGTA 897
|||||||||||| | || |||| ||||||||||||||||||||| |||||| | ||||||
Sbjct 913 CCTTTTTATTCGGATAATCCTGCTGGGAAAAAGAATCTCACTGATTGGTTTTTGAGAGTA 972
Query 898 TGGCCTAG-ATTAGAGGATGCGCCTGTGCAAGTTGATGTTGCGCTCGGTTATAGGTATTC 956
||| ||| || ||||||||||||||| ||| |||||||||||||||| ||||||| ||
Sbjct 973 TGGGATAGGATC-GAGGATGCGCCTGTGAAAGCTGATGTTGCGCTCGGTAATAGGTACTC 1031
Query 957 GGTTGAAGGTTTAAAGAAGATATTTGATACTGCCAGGATGTGTATAAAGGCAGAGCCACT 1016
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1032 GGTTGAAGGTTTAAAGAAGATATTTGATACTGCGAGGATGTGTATAAAGGCAGAGAGACT 1091
Query 1017 TGAACGGCCTACCATGAGTGATGTGGAAGCAATGGTTCTCAAAGCTGCATCTTTCCCGGT 1076
||||||||||||||||||||| |||||||| ||||||||| |||||||| ||||||||||
Sbjct 1092 TGAACGGCCTACCATGAGTGAAGTGGAAGCGATGGTTCTCGAAGCTGCAGCTTTCCCGGT 1151
Query 1077 CCAAGTGCCGCCACCCCAGGTGAAAAGGAGGCGTTCGGCTTCGACATA 1124
||||||||||| || |||||| |||||||||||||||||| |||||
Sbjct 1152 CCAAGTGCCGCG-CC--AGGTGACAAGGAGGCGTTCGGCTTCAACATA 1196
Score = 244 bits (132), Expect = 1e-63
Identities = 164/179 (92%), Gaps = 4/179 (2%)
Strand=Plus/Plus
Query 1 ATGAAACGTTTCTTTTGCTGTCTCAAAGGAGGAAGCTCACGTAACGCAGGGCAAGGTAAC 60
|||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1 ATGAAACGTTTCTTATGCTGTCTCAAAGGAGGAAGCTCAAGTAACGCAGCGCAAGGTAAC 60
Query 61 GACGAGAACGACGAAGTAAACCTTGACCGACC-ATTTGGGAATAACGAGCGCCTCAATCA 119
|||||||||||||||||| | | || || || |||||||||||||||||||||||||||
Sbjct 61 GACGAGAACGACGAAGTAGATGTCGAGCG-CCTATTTGGGAATAACGAGCGCCTCAATCA 119
Query 120 TCTTTGGAGAAATCATCTC-GCACTTCCTGACGATCGTGAAGTTTCAGATCCCACTGCT 177
||||||||||||||||||| | ||| |||||||||||||||||| ||||||| ||||||
Sbjct 120 TCTTTGGAGAAATCATCTCCG-ACTCCCTGACGATCGTGAAGTTGCAGATCCGACTGCT 177
> AT5G60080.1 | Symbols: | Protein kinase superfamily protein
| chr5:24193181-24194909 REVERSE LENGTH=1134
Length=1134
Score = 226 bits (122), Expect = 4e-58
Identities = 292/368 (79%), Gaps = 35/368 (10%)
Strand=Plus/Plus
Query 355 GCAGAGGTTACAACGTTACATGCAGCTAATCACCCAAATGTGATTAGACTTCTTGGCAAT 414
|||||| |||||||||| |||||||| |||||||||||||||||| |||| | |||||
Sbjct 349 GCAGAGACTACAACGTTATATGCAGCTGATCACCCAAATGTGATTAAACTTGTCGGCAAA 408
Query 415 TGTTACGGCCAAAGG--AACCGTGCT-ATAGTCTACGAATTCATGCCCAATGGCTGTCTT 471
| ||| || | || || ||| | ||||||||||||||||||| ||||||| ||||
Sbjct 409 TATTATGG--GATGGAAAAAAGTG-TCCTAGTCTACGAATTCATGCCTAATGGCTCTCTT 465
Query 472 GAGCC-TCA-CATCTTTGCACACGCGACGAGGGTGCAGGGTCAGTTACCTCAGGGTC-TA 528
|| || || | ||||||| || || ||| | ||| | | | |||||||| ||
Sbjct 466 GA-CCACCATC-TCTTTGCTCA--CG-CGA--G-GCA--G---G-T---TCAGGGTCTTA 508
Query 529 CAACTACCAATTAGGGTTTTGGATTGGGATACGAGGATGAGAATTGCT-TTGGGTGTAGC 587
| || |||| |||||||||||||||| | |||||| ||||||||||| || ||||||||
Sbjct 509 C-TCTGCCAACTAGGGTTTTGGATTGGAACACGAGGTTGAGAATTGCTGTT-GGTGTAGC 566
Query 588 C-AAGGGTCTGGTTTATCTACACCAGGAGCTGAAAGTGATTAACCGAGATGTCAAAGCCG 646
| || ||||| |||||| ||||||||| ||| | | |||| || ||||| |||||| ||
Sbjct 567 CGAA-GGTCTTGTTTATGTACACCAGGGGCTTTATGCGATTCACAGAGATATCAAAGTCG 625
Query 647 GAAATATTCTACTTGATGCAA--ATTTTGTGCCGAAGCTGACTGATTTTGGATTGGCGAC 704
||| ||| ||||||| ||| ||||||||||||||||||||||||||||||| |||||
Sbjct 626 AAAACATTTTACTTGA--CAAGGATTTTGTGCCGAAGCTGACTGATTTTGGATTTGCGAC 683
Query 705 TAAAATCG 712
||| ||||
Sbjct 684 TAAGATCG 691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56375212035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5