BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489701

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATMG00660.1 | Symbols: ORF149 | hypothetical protein | chrM:190...   466    7e-131


> ATMG00660.1 | Symbols: ORF149 | hypothetical protein | chrM:190104-190553 
REVERSE LENGTH=450
Length=450

 Score =  466 bits (252),  Expect = 7e-131
 Identities = 275/285 (96%), Gaps = 5/285 (2%)
 Strand=Plus/Plus

Query  1    ATGAGGCCTTTTGGCGAAGCCAAGTTTCTTTCGGGCCACCAAACCCTGCAACTGATGAGA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAGGCCTTTTGGCGAAGCCAAGTTTCTTTCGGGCCACCAAACCCTGCAACTGATGAGA  60

Query  61   AAGAAGGCCCTATGGGGTAAAGGGAAGCGTGTATGTTGTCTTGTCACACTCCCTGCCTTC  120
            ||||||||||||||| |||||||||||||||||    |  ||||||||||||||||||||
Sbjct  61   AAGAAGGCCCTATGGAGTAAAGGGAAGCGTGTA---CG--TTGTCACACTCCCTGCCTTC  115

Query  121  CAAAGGTGCCTAGAGGACGGGCCAGACGCAGCAGAGCGACAACCCGGGAGCAGATTCCCC  180
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct  116  CAAAGGTGCCTAGAGGACGGGCCAGACGCAGCGGAGCGACAACCCGGGAGCAGAGTCCCC  175

Query  181  ACCGGCAGGGGGACAGGAGACGGCCATCTCAAAGCACATCACGACCTACAGGTAAGACCG  240
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  176  ACCGGCAGGGGGACAGGAGACGGCCATCTCAAGGCACATCACGACCTACAGGTAAGACCG  235

Query  241  GCGAGACCAGGGAAGGCAACCCGATTGGGAGTCAGAGGATCCATA  285
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  236  GCGAGACCAGGGAAGGCAACCCGATTGGGAGTCAGAGGATCCATA  280


 Score =  224 bits (121),  Expect = 5e-58
 Identities = 128/131 (98%), Gaps = 2/131 (2%)
 Strand=Plus/Plus

Query  286  AAAGCGGAGGGAAGGGATCTCTTTTCTGCAACG--GaaaaaaaaCGGAGCAGATTTGACT  343
            |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||
Sbjct  320  AAAGCGGAGGGAAGGGATCTCTTTTCTGCAACGAAAAAAAAAAACGGAGCAGATTTGACT  379

Query  344  CGGCACAACCTAACGATACATCCAATACCAATGATCTGTGCCTAGAATGCGTTGCTAGAT  403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  380  CGGCACAACCTAACGATACATCCAATACCAATGATCTGTGCCTAGAATGCGTTGCTAGAT  439

Query  404  CTCTGTTCTAA  414
            |||||||||||
Sbjct  440  CTCTGTTCTAA  450



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19604422110


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5