BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489702
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
AT2G07696.1 | Symbols: | Ribosomal protein S7p/S5e family prot... 1485 0.0
ATMG01270.1 | Symbols: RPS7 | mitochondrial ribosomal protein S... 826 0.0
AT2G07599.2 | Symbols: | unknown protein; BEST Arabidopsis tha... 250 2e-65
ATMG01040.1 | Symbols: ORF107F | hypothetical protein | chrM:27... 139 4e-32
AT2G07664.1 | Symbols: | Pseudogene of ATMG01040 | chr2:326044... 139 4e-32
> AT2G07696.1 | Symbols: | Ribosomal protein S7p/S5e family protein
| chr2:3351050-3351881 REVERSE LENGTH=832
Length=832
Score = 1485 bits (804), Expect = 0.0
Identities = 823/832 (99%), Gaps = 1/832 (0%)
Strand=Plus/Plus
Query 1 TGGCTGATAAAGATGGACAGTAACGATTGCGTAATATAAATTTATCGGCCTCGTCATCGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGGCTGATAAAGATGGACAGTAACGATTGCGTAATATAAATTTATCGGCCTCGTCATCGA 60
Query 61 AAGCGGCTTCCAATTGCTCGGAAATTTTCAGCTATATGGGGGGCTTGGATGGTGAGCAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGCGGCTTCCAATTGCTCGGAAATTTTCAGCTATATGGGGGGCTTGGATGGTGAGCAAA 120
Query 121 AACTATTGATCAAGAAGTTGGTCAATTTTCGCATGAAAGAAGGTAAAAGAACGAGAGTTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AACTATTGATCAAGAAGTTGGTCAATTTTCGCATGAAAGAAGGTAAAAGAACGAGAGTTC 180
Query 181 GTGCTATTGTTTATCAAACTTTTCATCGCCCAGCTCGAACTGAACGCGATGTAATCAAAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTGCTATTGTTTATCAAACTTTTCATCGCCCAGCTCGAACTGAACGCGATGTAATCAAAC 240
Query 241 TTATGGTTGACGCCGTAGAGAATATAAAGCCCATATGCGAAGTAGCAAAAGTAGGAGTAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTATGGTTGACGCCGTAGAGAATATAAAGCCCATATGCGAAGTAGCAAAAGTAGGAGTAG 300
Query 301 CGGGTACTATTTATGATGTCCCTGGGATTGTAGCCAGGGATCGTCAACAAACCTTAGCTA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGGGTACTATTTATGATGTCCCTGGGATTGTAGCCAGGGATCGTCAACAAACCTTAGCTA 360
Query 361 TTCGTTGGATCCTTGAAGCAGCTTTCAAACGACGTATAAGCTATAGGATAAGCTTAGAGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCGTTGGATCCTTGAAGCAGCTTTCAAACGACGTATAAGCTATAGGATAAGCTTAGAGA 420
Query 421 AATGTTCATTTGCTGAGATACTGGATGCTTACCAAAAGAGGGGAAGTGCACGTAGGAAAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AATGTTCATTTGCTGAGATACTGGATGCTTACCAAAAGAGGGGAAGTGCACGTAGGAAAA 480
Query 481 GGGAGAATCTTCATGGACTGGCTTCCACCAATCGAAGTTTCGCGCATTTCAGATGGTGGT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGGAGAATCTTCATGGACTGGCTTCCACCAATCGAAGTTTCGCGCATTTCAGATGGTGGT 540
Query 541 AAAGTGAGACCACATAAAGAGCTCTTCGTCATTCAGTCAGATTATTAAGTAAGATATGGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AAAGTGAGACCACATAAAGAGCTCTTCGTCATTCAGTCAGATTATTAAGTAAGATATGGT 600
Query 601 TTGACCCTTTTCCTTTTTGTTTTCATTTTCATCCAGAAAGCCGGCCTTCCTCATACTCCT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTGACCCTTTTCCTTTTTGTTTTCATTTTCATCCAGAAAGCCGGCCTTCCTCATACTCCT 660
Query 661 CCCTTCATTCATTGAGTTAGAGGAATCCATAGGAGGCCCACCCGTTATGCATTGCATGAA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CCCTTCATTCATTGAGTTAGAGGAATCCATAGGAGGCCCACCCGTTATGCATTGCATGAA 720
Query 721 AGAACCTTTCTTTTTTGTATGACTTCTCTTTT-GCCTCAGGTCGAATGAATACGAAAGGG 779
|||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 721 AGAACCTTTCTTTTTTGTATGACTGAGAGGAACGCCTCAGGTCGAATGAATACGAAAGGG 780
Query 780 AGATCAATCCAAAGAAACAAAAAAGGCCATGAATGAAGAAGTTGGGCCTTTC 831
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AGATCAATCCAAAGAAACAAAAAAGGCCATGAATGAAGAAGTTGGGCCTTTC 832
> ATMG01270.1 | Symbols: RPS7 | mitochondrial ribosomal protein
S7 | chrM:314627-315073 FORWARD LENGTH=447
Length=447
Score = 826 bits (447), Expect = 0.0
Identities = 447/447 (100%), Gaps = 0/447 (0%)
Strand=Plus/Plus
Query 96 ATGGGGGGCTTGGATGGTGAGCAAAAACTATTGATCAAGAAGTTGGTCAATTTTCGCATG 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGGGCTTGGATGGTGAGCAAAAACTATTGATCAAGAAGTTGGTCAATTTTCGCATG 60
Query 156 AAAGAAGGTAAAAGAACGAGAGTTCGTGCTATTGTTTATCAAACTTTTCATCGCCCAGCT 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAGAAGGTAAAAGAACGAGAGTTCGTGCTATTGTTTATCAAACTTTTCATCGCCCAGCT 120
Query 216 CGAACTGAACGCGATGTAATCAAACTTATGGTTGACGCCGTAGAGAATATAAAGCCCATA 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGAACTGAACGCGATGTAATCAAACTTATGGTTGACGCCGTAGAGAATATAAAGCCCATA 180
Query 276 TGCGAAGTAGCAAAAGTAGGAGTAGCGGGTACTATTTATGATGTCCCTGGGATTGTAGCC 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGCGAAGTAGCAAAAGTAGGAGTAGCGGGTACTATTTATGATGTCCCTGGGATTGTAGCC 240
Query 336 AGGGATCGTCAACAAACCTTAGCTATTCGTTGGATCCTTGAAGCAGCTTTCAAACGACGT 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGGGATCGTCAACAAACCTTAGCTATTCGTTGGATCCTTGAAGCAGCTTTCAAACGACGT 300
Query 396 ATAAGCTATAGGATAAGCTTAGAGAAATGTTCATTTGCTGAGATACTGGATGCTTACCAA 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATAAGCTATAGGATAAGCTTAGAGAAATGTTCATTTGCTGAGATACTGGATGCTTACCAA 360
Query 456 AAGAGGGGAAGTGCACGTAGGAAAAGGGAGAATCTTCATGGACTGGCTTCCACCAATCGA 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAGAGGGGAAGTGCACGTAGGAAAAGGGAGAATCTTCATGGACTGGCTTCCACCAATCGA 420
Query 516 AGTTTCGCGCATTTCAGATGGTGGTAA 542
|||||||||||||||||||||||||||
Sbjct 421 AGTTTCGCGCATTTCAGATGGTGGTAA 447
> AT2G07599.2 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:ATMG01040.1).
| chr2:3348796-3351212 REVERSE LENGTH=1232
Length=1232
Score = 250 bits (135), Expect = 2e-65
Identities = 154/163 (94%), Gaps = 1/163 (1%)
Strand=Plus/Plus
Query 670 CATTGAGTTAGAGGAATCCATAGGAGGCCCACCCGTTATGCATTGCATGAAAGAACCTTT 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CATTGAGTTAGAGGAATCCATAGGAGGCCCACCCGTTATGCATTGCATGAAAGAACCTTT 60
Query 730 CTTTTTTGTATGACT-TCTCTTTTGCCTCAGGTCGAATGAATACGAAAGGGAGATCAATC 788
||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTTTTTGTATGACTGAGAGGAACGCCTCAGGTCGAATGAATACGAAAGGGAGATCAATC 120
Query 789 CAAAGAAACAAAAAAGGCCATGAATGAAGAAGTTGGGCCTTTC 831
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAAAGAAACAAAAAAGGCCATGAATGAAGAAGTTGGGCCTTTC 163
> ATMG01040.1 | Symbols: ORF107F | hypothetical protein | chrM:270238-270561
REVERSE LENGTH=324
Length=324
Score = 139 bits (75), Expect = 4e-32
Identities = 78/79 (99%), Gaps = 1/79 (1%)
Strand=Plus/Plus
Query 753 GCCTCAGGTCGAATGAATACGAAAGGGAGATCAATCCAAAGAAACAAAAAAGGCCATGAA 812
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 16 GCCTCAGGTCGAATGAATACGAAAGGGAGATCAATC-AAAGAAACAAAAAAGGCCATGAA 74
Query 813 TGAAGAAGTTGGGCCTTTC 831
|||||||||||||||||||
Sbjct 75 TGAAGAAGTTGGGCCTTTC 93
> AT2G07664.1 | Symbols: | Pseudogene of ATMG01040 | chr2:3260447-3260769
FORWARD LENGTH=323
Length=323
Score = 139 bits (75), Expect = 4e-32
Identities = 78/79 (99%), Gaps = 1/79 (1%)
Strand=Plus/Plus
Query 753 GCCTCAGGTCGAATGAATACGAAAGGGAGATCAATCCAAAGAAACAAAAAAGGCCATGAA 812
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 16 GCCTCAGGTCGAATGAATACGAAAGGGAGATCAATC-AAAGAAACAAAAAAGGCCATGAA 74
Query 813 TGAAGAAGTTGGGCCTTTC 831
|||||||||||||||||||
Sbjct 75 TGAAGAAGTTGGGCCTTTC 93
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40488722482
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5