BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489706
Length=1270
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1700 0.0
> AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5794529-5797375 REVERSE LENGTH=1443
Length=1443
Score = 1700 bits (920), Expect = 0.0
Identities = 1190/1311 (91%), Gaps = 55/1311 (4%)
Strand=Plus/Plus
Query 1 TCTTATCCAAAACTCTCTCACTCATGGCTCTTCTTCGTCTTCCTGGCATTTCCCTCCAAA 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 38 TCTTATCCAAAACTCTCTCAGTCATGGCTCTTCTTCGTCTTCCTGGCATTTCCCTCCAAA 97
Query 61 TTCTAGGTCACAAATCAAACCACAAGAACCCTAATCCCAAAT-TCT-CACTT-ACCAATC 117
|||||||||||||||||||||| ||||||||||||||| ||| | | | ||| |||||||
Sbjct 98 TTCTAGGTCACAAATCAAACCAGAAGAACCCTAATCCC-AATGT-TGC-CTTCACCAATC 154
Query 118 ACTCTCTCTCTTTCTCTACTTCTTCACTATGTCTTCTCAATCATCACGCGACGTTTCCAG 177
||||||||||||| |||||| |||||||||||| |||| ||| |||||||||||||||||
Sbjct 155 ACTCTCTCTCTTTATCTACTCCTTCACTATGTCGTCTCCATCGTCACGCGACGTTTCCAG 214
Query 178 ATTCAATTCCATCAAAATCCAGAAACTTCACCACTTACTTCTCCGCCACAACACAAGAGC 237
| ||||||||| |||||||||||||| |||| | ||||||||| |||||||||||||||
Sbjct 215 ACTCAATTCCAGCAAAATCCAGAAACCTCACTTCGTACTTCTCCACCACAACACAAGAGC 274
Query 238 CAGTCCTCGAA------TCTTCTTCTTCTTCAGCTACTGATGTAGTAGAAGAAGAGATTT 291
||||||||||| |||||||||||||||||| |||| |||||||||||||||||||
Sbjct 275 CAGTCCTCGAATCTTCTTCTTCTTCTTCTTCAGCTCCTGAGGTAGTAGAAGAAGAGATTT 334
Query 292 CTAAAACCAGATTAATTGCTCAGAACGTTCCTTGGACCTCTACACCTGAAGATATAAGGT 351
||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||| || |
Sbjct 335 CTAAAACCAGATTGATTGCTCAGAATGTTCCATGGACATCTACACCTGAAGATATTAGAT 394
Query 352 CATTGTTCGAGAAATACGGCAATGTTATCGACATTGAGATGTCTATGCATAAGAAGGAAA 411
| ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 395 CGTTGTTCGAGAAGTACGGGAGTGTTATCGACATTGAGATGTCTATGCATAAGAAGGAAA 454
Query 412 GGAATAGAGGTTTGGTTTTCATTGAAATGGCTTCTCCTGAAGAAGCTGCAACAGCTCTTA 471
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 GAAATAGAGGTTTGGTGTTCATTGAAATGGCTTCTCCTGAAGAAGCTGCAACAGCTCTTA 514
Query 472 AATCTCTCGAATCGTATGATTATGAGGGTCGTCGTTTGAAGGTAGACTATGCAAAGACCA 531
||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 515 AATCTCTTGAATCGTGTGAATATGAGGGTCGTCGTTTGAAGGTAGACTATGCAAAGACCA 574
Query 532 AAAAGAAGAAGACATATGCGCCGCGTGAGAAGCCTTCACCAGTGCCTACATTCAATTTGT 591
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 575 AAAAGAAGAAGACATATGCGCCGCGTGAGACGCCTTCACCAGTGCCTACATTCAATTTGT 634
Query 592 TCGTTGCAAACTTGGCATTCGAAGCAAGAGCCAAGCATCTTAAGGAGTTCTTTGATGCAG 651
| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 635 TTGTTGCAAACTTGGCATTTGAAGCAAGGGCCAAGCATCTTAAGGAGTTCTTTGATGCAG 694
Query 652 ACACTGGTAATGTTGTGTCCACTGAAGTTATATTCCATGAAAATCCAAGGAGGTCGAGTG 711
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 ACACTGGTAATGTTGTCTCCACTGAAGTTATATTCCATGAAAATCCAAGGAGGTCGAGTG 754
Query 712 GTTATGGGTTTGTCTCTTTCAAAACCAAGAAACAGGCCGAGGCAGCACTGATTGAGTTCC 771
|||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 755 GTTACGGGTTTGTCTCTTTCAAAACCAAGAAACAGGCCGAGGCAGCGCTTATTGAGTTCC 814
Query 772 AAGGAAAGGATTTCATGGGAAGACCAATCCGATTAGCTAAAAGCAAACAGTTTGTGAAGT 831
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 815 AAGGAAAGGATTTTTTGGGAAGGCCAATCCGATTAGCTAAAAGCAAACAGTTTGTGAAGT 874
Query 832 TGCAAGCAAAAGAAGGGTTGCAGCCACC-G-G-AGGA-G--GAGGAGGAACCATCTCCTT 885
|||||||||||||||||||||||||||| | | |||| | |||||||||||||||| |
Sbjct 875 TGCAAGCAAAAGAAGGGTTGCAGCCACCAGAGGAGGAAGCAGAGGAGGAACCATCTCAGT 934
Query 886 CCGAGGCAATGACCCAAGAGGTTGAAACTCCGGCTGCATAAAACTGAGAAGTCTTTGTTG 945
| ||| |||||||||||||| |||||||||||||||||||||| ||||||||| ||||
Sbjct 935 CTGAGACAATGACCCAAGAGCACGAAACTCCGGCTGCATAAAACTTAGAAGTCTTCGTTG 994
Query 946 CAGGATTATTACTGTGGATG-TATTGGAATTGAAGAA-AA------AGCTTTT----CTT 993
|||||| ||| | |||| | |||||||||||| ||| || ||||||| |||
Sbjct 995 CAGGATCATTG-T-TGGA-GATATTGGAATTGACGAAGAAGCTTCGAGCTTTTAGGTCTT 1051
Query 994 ----CTT---AGTTTTTGACCAACAAGAGGAGTAGATACATACAAGTA---CCAACCTTG 1043
||| ||||||||||||||||||||||| | |||||||||||| || ||||||
Sbjct 1052 TATTCTTCTTAGTTTTTGACCAACAAGAGGAGTGGGTACATACAAGTAGTACCTACCTTG 1111
Query 1044 AGTAAATGGTGGAGAAGTAAGTAAGAAGTACAAGACCGATTTTGTTAGAACTGAAAACTA 1103
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1112 AGTAAATGGTGGAGA-G---GTAAGAAGTACAAGACCGATTTTGTTAGAACTGAAAACTA 1167
Query 1104 GTA-GAGACCGGTAT-ACCAAACGTCAGTATCAGACCAGATCAAATCTCAAGAAACAACC 1161
||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1168 GTAAGAGACAGGTATTACCAAACGTCAGTATCAGACCAGATCAAATCTCAAGAAACAAAC 1227
Query 1162 CCATGTGTCTC-TGA-GAAACTTACTTTGTTAAGTTTAAACACAATGCTTCTTTGTTTGT 1219
|||||| ||| | | ||||||| ||||||| |||| |||||||||||||||||||||||
Sbjct 1228 TCATGTGGCTCCT-ACGAAACTTGCTTTGTTCAGTT-AAACACAATGCTTCTTTGTTTGT 1285
Query 1220 CATCTAGTTTCGATTGCTTGTTTTTGCGTTTGTTATATGTTTAGTGTGTAA 1270
|||||| |||||||| ||||||| |||||||||||||| |||||||||||
Sbjct 1286 CATCTACTTTCGATTACTTGTTT--GCGTTTGTTATATGCTTAGTGTGTAA 1334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62449477980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5