BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489709
Length=1160
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09010.1 | Symbols: APX4, TL29 | ascorbate peroxidase 4 | ch... 1411 0.0
> AT4G09010.1 | Symbols: APX4, TL29 | ascorbate peroxidase 4 |
chr4:5777397-5779462 REVERSE LENGTH=1279
Length=1279
Score = 1411 bits (764), Expect = 0.0
Identities = 873/926 (94%), Gaps = 6/926 (1%)
Strand=Plus/Plus
Query 237 CTTTCCACCGCCGTGATGTTCTCAAACTCGCCGGCACTGCCA-TGGGAATGGAATTAATA 295
||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct 273 CTTTCCACCGCCGTGATGTTCTCAAACTCGCCGGCACTG-CAGTCGGAATGGAATTAATA 331
Query 296 GGCAATGGTTTCATTAATC-ATGTGGGTGATGCAAATGCTGCTGATTTGAATCAACGTAG 354
||||| ||||||||||| | |||||||||||||||| |||||||| ||||||||||||||
Sbjct 332 GGCAACGGTTTCATTAA-CAATGTGGGTGATGCAAAAGCTGCTGACTTGAATCAACGTAG 390
Query 355 ACAACGATCCGAGCTTCAATCAAAGATCAAGATTACGCTTTCGAGCGCCATTAAGGCTAA 414
||||||||||||| |||||||||||||||||||| |||||| | | |||||||||||||
Sbjct 391 ACAACGATCCGAGTTTCAATCAAAGATCAAGATTTTGCTTTCAACCACCATTAAGGCTAA 450
Query 415 ACCGGAGCTTGTACCTTCCATACTCAAACTAGCTCTCAATGATGCAATGACTTATGATAA 474
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 451 ACCGGAGCTTGTACCTTCCTTACTCAAACTAGCTCTCAATGATGCTATGACTTATGATAA 510
Query 475 GGCTACAAAATCCGGGGGAGCCAATGGATCTATTCGGTTCAGCTCTGAGCTAAGTAGAGC 534
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 511 GGCTACTAAATCCGGGGGAGCCAATGGATCCATACGGTTCAGCTCTGAGCTAAGTAGAGC 570
Query 535 AGAGAACGAGGGACTTTCTGATGGGTTGAGTCTGATAGAGGATGTGAAGAAGGAGATTGA 594
|||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 571 AGAGAATGAGGGACTTTCTGATGGGTTGAGTTTGATAGAGGAAGTGAAGAAGGAGATTGA 630
Query 595 CTCGATCTCGAAGGGAGGGCCTATTTCATATGCAGATCTCATTCAATTGGCAGGACAATC 654
||| |||||||||||||| |||||||||||||||||| |||||||||| |||||||||||
Sbjct 631 CTCTATCTCGAAGGGAGGTCCTATTTCATATGCAGATATCATTCAATTAGCAGGACAATC 690
Query 655 AGCGGTCAAGTCTACGTTTTTAGCATCGGCAATCCGCAAATGTGGTGGAAATGAAGAAAA 714
||||||||||| ||| | |||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 691 AGCGGTCAAGTTTACATATTTAGCATCGGCTATCCGAAAATGTGGTGGAAATGAAGAGAA 750
Query 715 AGGGAACTTACTCTACACAGCATATGGTTCTGCTGGTCAGTGGGGCTTGTTTGATAGAAA 774
||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 751 GGGGAACTTACTTTACACAGCATATGGTTCAGCTGGTCAGTGGGGATTGTTTGATAGAAA 810
Query 775 TTTCGGAAGGAGTGATGCAACTGAGGCAGATCCAGAAGGCAGAGTCCCACAGTGGGGTAA 834
||| ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||
Sbjct 811 TTTTGGAAGGAGTGATGCAACAGAGGCTGATCCAGAAGGCAGAGTCCCACAATGGGGGAA 870
Query 835 AGCAACTGTGCAAGAGATGAAAGATAAGTTCATTGCCATTGGATTGGGTCCTCGTCAGCT 894
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 871 AGCAACTGTGCAAGAGATGAAAGATAAGTTCATTGCTGTTGGATTGGGTCCTCGTCAGCT 930
Query 895 AGCTGTAATGTCTGCATTCTTGGGTCCTGATCAA-CTAGCAACAGAACAGCTCTTGGCTA 953
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 931 AGCTGTAATGTCTGCATTCTTGGGTCCTGATCAAGCT-GCAACAGAACAGCTCTTAGCTA 989
Query 954 CTGACCCGCAAGTTGCTCCATGGGTTCAGAAGTACCAAAGAAGCCGTGAAACCGTATCTC 1013
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 990 CTGACCCTCAAGTTGCTCCATGGGTTCAGAAGTATCAAAGAAGCCGTGAAACCGTATCTC 1049
Query 1014 AGACAGATTACGAGGTTGATCTAATAACAGCATTCACAAAGCTAAGTTGCTTAGGACAAC 1073
|||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 1050 AGACTGATTACGAGGTTGATCTCATAACTGCATTCACAAAGCTAAGTTGCTTAGGACAGC 1109
Query 1074 AAATCAACTTCGAGGCATACACATATCCCGTCGAACGGATCAATCTGAGCAAACTCAAGC 1133
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 AAATCAACTTCGAGGCATATACATATCCCGTCGAACGGATCAATCTGAGCAAACTCAAGC 1169
Query 1134 TATAAGCTATGTACACTATATGTATA 1159
||||||||||||||||||||||||||
Sbjct 1170 TATAAGCTATGTACACTATATGTATA 1195
Score = 385 bits (208), Expect = 6e-106
Identities = 232/243 (95%), Gaps = 4/243 (2%)
Strand=Plus/Plus
Query 1 GGAGATTTGGATAACAGAGAATCCACAAAAGTGTATCCTTCACAAAACCAAAACACACTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGAGATTTGGATAACAGAGAATCCACAAAAGTGTATCCTTCACAAAACCAAAACACACTC 60
Query 61 TCCATTTTCTTCAGACAActctctcttctttcttctctcttctctgtctcATCACAAACC 120
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 61 TCCATTTTCTTCAGACAACTCTTTCTCCTTTCTTCTCTCTTCTCTGTCTCATCACAAACC 120
Query 121 AGAGATGGGAGGAGTCTCCTTCCTCTCCACTGTTCCTTCCTTCACCAACACAACCAATCA 180
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGAAATGGGAGGAGTGTCCTTCCTCTCCACTGTTCCTTCCTTCACCAACACAACCAATCA 180
Query 181 TCAACATCTCACTACACTCTCTTCTTCTTCTTCTCATCGCTCTGCTGTCATAAGATCTTT 240
||||||||||||||||||||||||||||||| | ||||||||||||| ||| ||| ||
Sbjct 181 TCAACATCTCACTACACTCTCTTCTTCTTCT-C--ATCGCTCTGCTGTTATACGATGTT- 236
Query 241 CCA 243
|||
Sbjct 237 CCA 239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56927418030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5