BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489715
Length=1361
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08960.1 | Symbols: | phosphotyrosyl phosphatase activator ... 2085 0.0
> AT4G08960.1 | Symbols: | phosphotyrosyl phosphatase activator
(PTPA) family protein | chr4:5746289-5748285 FORWARD LENGTH=1507
Length=1507
Score = 2085 bits (1129), Expect = 0.0
Identities = 1257/1319 (95%), Gaps = 8/1319 (1%)
Strand=Plus/Plus
Query 1 TCGTTACGTCTCTGTAAA-CACTTCGAAAATGGAATCTTCAAAGGAACAACAAAACACGC 59
|||||||||||||||||| |||| |||||||||| || |||||||||||||||||||||
Sbjct 9 TCGTTACGTCTCTGTAAATCACTGAGAAAATGGAACCTCCAAAGGAACAACAAAACACGC 68
Query 60 CGGAGAAATCAACCTCCGAAGCTCCGGCCACCGT-TCCCTCCGCCTTTCCTCCCTCCGGT 118
|||||||||||| |||||| ||||| |||||| | | |||||||||||||||| |||||
Sbjct 69 CGGAGAAATCAATCTCCGATGCTCCAGCCACCATAT-CCTCCGCCTTTCCTCCTTCCGGA 127
Query 119 TGCTGTACAAAGTGCGGCGGACCAACGATTTCCG-A--ACCACCACCACTCGCTTCATTC 175
||||| ||||| |||||||||||||||||||| | | |||||||||||| |||||||||
Sbjct 128 TGCTGCACAAACTGCGGCGGACCAACGATTTCAGAAGCACCACCACCACTAGCTTCATTC 187
Query 176 CCGGAGATGTCACCACCACCAAACTATCGCCCGATCCGAGCTCCAGCAATCAATCTCCCT 235
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 188 CCAGAGATGTCACCACCACCAAACTATCGTCCGATCCGAGCTCCAGCAATCAATCTCCCA 247
Query 236 TACAACTCTCAAGCAATAATCCTCTCTCCAGTTCCTCACGCCGAACAAGTCCCCGTCGTA 295
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 248 CACAACTCTCAAGCAATAATCCTCTCTCCCGTTCCTCACGCCGAACAAGTCCCCGTCGTA 307
Query 296 TCTCCGCCGTATCAATTCCAATCTCCCGTCAAAAGAATCCACTCTCCCGACGATATCCGC 355
|||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 308 TCTCCGCCCTATCATTTCCAATCTCCCGTCAAACGAATCCACTCTCCCGACGATATCCGC 367
Query 356 CGATTTCACGAATCTGCATCTTGTAAGAACTTCTTAGGATTCGTAGTATCTCTCTCAGAA 415
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 CGATTTCACGAATCCGCTTCTTGTAAGAACTTCTTAGGATTCGTAGTATCTCTCTCAGAA 427
Query 416 TCGATCCGTGGATATAAGATCTCAGATCCTTGTGATATCTCACCAACCGTCGCCGCCATA 475
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 428 TCGATCCGTGGATTTAAGATCTCAGATCCTTGTCATATCTCACCAACCGTCGCCGCCATA 487
Query 476 GTTTCAACCCTTGAAACTTTGTTACAATGGATCGATGAGATTCCTCCTGCTCAACAATCG 535
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 488 GTTTCAATCCTTGAAACATTGTTACAATGGATCGATGAGATTCCTCCTGCTCAACAATCA 547
Query 536 GCTCGATACGGTAACGTTTCGTTTAGGTCATGGCATGAACGGCTTGGTGAGAGAGGTGAA 595
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 548 GCTCGATACGGTAACGTTTCGTTTAGGTCATGGCATGAACGGCTCCGTGAGAGAGGTGAA 607
Query 596 TCGCTTATTCTTGAGTTTCTTCCTGAGGAATTTAAAGAATCTATAATCGAGATTGTCCCT 655
|||||||| ||||||||||||||||||||||||||||||||| | || |||||||| |||
Sbjct 608 TCGCTTATACTTGAGTTTCTTCCTGAGGAATTTAAAGAATCTGTGATTGAGATTGTTCCT 667
Query 656 TACTTCTTCGATAGCTTTGGGAACTCAAGTAGGATTGATTACGGAACCGGACACGAGACG 715
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 668 TACTTCTTCGATAGCTTTGGGAACTCAAGTAGGATTGATTACGGAACGGGACACGAAACA 727
Query 716 AATTTCGCGGCTTGGTTGTATTGTTTAGCTAGGATGGGGATTGTGAAAGAAGAGGATTAT 775
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 728 AATTTCGCGGCGTGGTTGTATTGTTTAGCTAGGATGGGGATAGTGAAAGAAGAGGATTAT 787
Query 776 CATGGTTTGGTGGCTAGGGTTTTTGTTAAGTATTTGGAGTTGATGAGGAAATTGCAAATG 835
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 CATAGTTTGGTTGCTAGGGTTTTTGTTAAGTATTTGGAGTTGATGAGGAAATTGCAAATG 847
Query 836 GTTTATTGCTTAGAACCAGCTGGATCTCATGGAGTTTGGGGACTTGATGATTACCATTTC 895
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 GTTTATTGTTTAGAACCAGCTGGATCTCATGGAGTTTGGGGACTTGATGATTACCATTTC 907
Query 896 TTGCCATTCATATTTGGGAGTTCTCAGTTGATTGATCATAAGTATATGAAACCGAAATCG 955
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 TTGCCTTTCATATTTGGGAGTTCTCAGTTGATTGATCATAAGTATATGAAACCGAAATCG 967
Query 956 ATTCATAACGATGATATTTTGGAGAATTTCTCTAGTGAATACATGTACTTGTCTTGTATC 1015
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 ATTCATAACGATGATATTTTGGAGAATTTCTCTAGTGAATACATGTACTTGTCTTGTATT 1027
Query 1016 GCATTTGTGAAGAAGGTGAAGAAAGGTTTGTTTGCTGAGCATTCGCCGTTGTTGGATGAT 1075
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1028 GCATTTGTGAAGAAGGTTAAGAAAGGTTTGTTCGCTGAGCATTCGCCGTTGTTGGATGAT 1087
Query 1076 ATAAGTGGTGTACCGAACTGGAAGAAAGTGAATAGCGGTTTGCTTAAGATGTATAGAGTT 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 ATAAGTGGTGTACCGAACTGGAAGAAAGTGAATAGCGGTTTGCTTAAGATGTATAGAGTT 1147
Query 1136 GAAGTGCTCGAGAAAGTTCCGATTATGCAGCATTTCCTCTTTGGCTGGCTCATCAAATGG 1195
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 GAAGTGCTTGAGAAAGTTCCGATTATGCAGCATTTCCTCTTTGGCTGGCTCATCAAATGG 1207
Query 1196 GAAGAGTGATTTACTTCAGTG--CCATAAATGGAAGCAGGGACAACGATTTTCTCTTCCT 1253
||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||
Sbjct 1208 GAAGAGTGATTTACTTCAGTGTGCCATACATGGAAGCAGGGACAGCGATTTTCTCTTCCT 1267
Query 1254 TGAGGTGGCTTAACATAAAGTAGAGACGCCTTTGCTTTTGCATGTATCTGATACGCATG 1312
|||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1268 TGAGGTTGCTTAACATAAAGTAGAGACGCTTTTGCTTTTGCATGTATCTGATAGGCATG 1326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67017727575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5