BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489716
Length=1147
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08950.1 | Symbols: EXO | Phosphate-responsive 1 family prot... 1694 0.0
> AT4G08950.1 | Symbols: EXO | Phosphate-responsive 1 family protein
| chr4:5740297-5741524 FORWARD LENGTH=1228
Length=1228
Score = 1694 bits (917), Expect = 0.0
Identities = 1092/1172 (93%), Gaps = 30/1172 (3%)
Strand=Plus/Plus
Query 1 TCTCACAAACCAATCTAAACAT------C-AAAACCAAACTTCCTTCACTATTACACTTT 53
|||||||||||||||||||||| | |||||||||| || ||||||||||||||||
Sbjct 4 TCTCACAAACCAATCTAAACATCAAAGACAAAAACCAAACCTCTTTCACTATTACACTTT 63
Query 54 TCCTC--aaaaaagaaaaaTGTATTCGTTAGTGTTTAAACTCTTTCTATTTTTATCTCTT 111
||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 64 TCCTCAAAAAAAAGAAAAATGTATTTGTTAGTGTTTAAACTCTTTCTATTTTTGTCTCTT 123
Query 112 CTCCAAATCTCTGTCTCTGCTAGGAACCTAGCAACTGAAGAACCAAACCAGTTTAAACTA 171
|| |||||||||||||||||||| |||||||| | ||||||||||||||||| |||||
Sbjct 124 CTTCAAATCTCTGTCTCTGCTAGAAACCTAGCTTCACAAGAACCAAACCAGTTTCAACTA 183
Query 172 CTAAAGTACCACAAAGGAGCTCTCCTTTCCGGCAAAATCTCCGTTAACCTAATCTGGTAC 231
|| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 184 CTCAAGTACCACAAAGGAGCTCTTCTCTCCGGCAAAATCTCCGTTAACCTAATCTGGTAC 243
Query 232 GGCAAATTCAAACCATCTCAAAGAGCAATCATCTCCGACTTCATAACCTCACTCACACAC 291
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 244 GGCAAATTCAAACCATCTCAAAGAGCAATCATCTCCGACTTCATTACCTCACTCACACAC 303
Query 292 ACTTCTCCTACGTCCAAAACTCTCCACCAACCATCTGTCGCCACGTGGTGGAAAACCACA 351
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 304 ACTTCTCCTACGTCCAAAACTCTCCACCAACCATCTGTTGCCACGTGGTGGAAAACCACA 363
Query 352 GAAAAATACTACAAACTCGCAACACCCAGTAAAAACTCATCACCTCTTTCTCTAACTCTC 411
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 364 GAAAAATACTACAAACTCGCAACACCCAGCAAAAACTCATCACCTCTGTCTCTAACTCTC 423
Query 412 GGGAAACAAATCCTCGACGAGTCTTGCTCTCTTGGAAAATCTTTAACCGATACAAAGATT 471
|||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 424 GGGAAACAAATCATCGACGAGTCTTGCTCTCTAGGAAAATCTTTAACCGATAAAAAGATT 483
Query 472 CGCCAA--CTAGCTTCAAAAGGTGACCAACGCGACGCCATCAACGTCGTTTTGACTTCAG 529
| || |||||||| ||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 484 --CAAACCCTAGCTTCGAAAGGAGACCAACGCAACGCCATCAACGTCGTTTTGACTTCAG 541
Query 530 CTGACGTTACAGTTACAGGATTTGGTATGAGTCGTTGCGGGACTCATGGACACGCTCGTG 589
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 542 CTGACGTTACGGTTACAGGATTTGGTATGAGTCGTTGCGGGACTCACGGACACGCTCGTG 601
Query 590 GTTTAGGTAAACGTGGCTCCAAGTTTGCTTACATTTGGGTCGGAAACTCTGAGACACAAT 649
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 602 GTTTAGGTAAACGTGGCTCCAAGTTTGCTTACATTTGGGTTGGAAACTCTGAGACACAAT 661
Query 650 GTCCTGGTCAATGCGCGTGGCCTTTCCACGCGCCGGTGTACGGTCCACAGAGTCCACCAC 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 GTCCTGGTCAATGCGCGTGGCCTTTCCACGCGCCGGTGTACGGTCCACAGAGTCCACCAC 721
Query 710 TTGTGGCACCAAACAATGACGTTGGACTTGACGGGATGGTTATTAACTTAGCTAGTCTCT 769
| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |
Sbjct 722 TAGTGGCACCAAACAATGACGTGGGACTCGATGGGATGGTTATTAACTTAGCTAGTCTTT 781
Query 770 TAGCTGGAACTGCAACGAACCCGTTTGGTAATGGTTATTACCAAGGTCCACAAAACGCAC 829
|||||||||| ||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 782 TAGCTGGAACCGCAACGAACCCTTTTGGTAATGGTTACTATCAAGGTCCACAAAACGCAC 841
Query 830 CGCTTGAAGCTGCGTCTGCTTGTCCTGGCGTTTATGGTAAAGGAGCTTATCCTGGTTATG 889
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 842 CGCTTGAAGCTGCTTCTGCTTGTCCTGGCGTTTATGGTAAAGGAGCTTATCCTGGTTACG 901
Query 890 CTGGAGATTTACTTGTGGATACTACAACGGGAGGTAGTTTTAATGCGTATGGTGCAAACG 949
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 CTGGAGATTTGCTTGTGGATACTACAACGGGAGGTAGTTTTAATGCGTATGGTGCAAACG 961
Query 950 GCAGGAAGTTTTTGCTTCCAGCTTTGTATGATCCTACGACGTCGGATTGCTCTACTATGG 1009
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 962 GCAGGAAGTTTTTGCTTCCTGCTTTGTATGATCCTACGACGTCGGCTTGCTCTACTATGG 1021
Query 1010 TCTGA-T-C-----------C-AATGTTTGGTCTTTGGTAGTAGAAAATAATATTCTAGT 1055
||||| | | | |||||||||||||||||||||||||||||||||||||
Sbjct 1022 TCTGAATACTAAAAAAAAGTCCAATGTTTGGTCTTTGGTAGTAGAAAATAATATTCTAGC 1081
Query 1056 GTAATTCtttttttttttttttttGTTACAAATTCTAGTGTAATTCAATTTATTCATTAA 1115
||||||||||| || | ||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1082 GTAATTCTTTTGTTATGTTTG---GTTACAAATTCTAGTATAATTCAATTTATTCATTAA 1138
Query 1116 TATTATTCTCATTTTCCCCTTAATGTTGTATG 1147
||||||||||||||| ||||| ||||||||||
Sbjct 1139 TATTATTCTCATTTTTCCCTTCATGTTGTATG 1170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56274810945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5