BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489722
Length=533
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13370.1 | Symbols: | Histone superfamily protein | chr1:45... 701 0.0
AT1G75600.1 | Symbols: | Histone superfamily protein | chr1:28... 676 0.0
AT5G10980.1 | Symbols: | Histone superfamily protein | chr5:34... 448 3e-125
AT1G19890.1 | Symbols: ATMGH3, MGH3 | male-gamete-specific hist... 355 2e-97
AT1G75610.1 | Symbols: | pseudogene, histone H3, identical to ... 292 2e-78
> AT1G13370.1 | Symbols: | Histone superfamily protein | chr1:4587780-4588613
REVERSE LENGTH=648
Length=648
Score = 701 bits (379), Expect = 0.0
Identities = 423/445 (95%), Gaps = 0/445 (0%)
Strand=Plus/Plus
Query 1 TTCTAAGCTATCAGATTCTTGAAGAAGCCATGGCTCGTACGAAGCAAACCGCGAGAAAAT 60
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 63 TTCTAAGCTCTCAGATTCTTGAAGAAGCCATGGCTCGTACGAAGCAATCCGCGAGAAAAT 122
Query 61 CACACGGAGGAAAAGCTCCGAGGAAGCAGCTCGCTACCAAGGCGGCGAGGAAATCTGCGC 120
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
Sbjct 123 CACACGGAGGAAAAGCTCCGACGAAGCAGCTCGCTACCAAGGCGGCAAGGAAATCTGCAC 182
Query 121 CGACTACCGGAGGAGTCAAGAAACCTCACCGTTACCGTCCTGGAACCGTCGCTCTTCGTG 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 183 CGACTACCGGAGGAGTCAAGAAACCTCACCGTTTCCGTCCTGGAACCGTCGCTCTTCGTG 242
Query 181 AGATTCGTAAATACCAGAAGAGCACAGAGTTGTTGATCCGCAAACTTCCATTTCAGCGTC 240
|||||||||||||||| ||||||||||||||||||| ||| ||||||||||| || ||||
Sbjct 243 AGATTCGTAAATACCAAAAGAGCACAGAGTTGTTGAACCGTAAACTTCCATTCCAACGTC 302
Query 241 TTGTTCGTGAAATAGCCCAAGATTTCAAGACGGATCTGAGATTTCAGAGCCATGCAGTGT 300
||||||||||||| || |||||||||||||||||||||||||| || |||||||||||||
Sbjct 303 TTGTTCGTGAAATCGCTCAAGATTTCAAGACGGATCTGAGATTCCAAAGCCATGCAGTGT 362
Query 301 TAGCTCTTCAAGAAGCTGCTGAAGCATATTTGGTGGGTTTGTTTGAAGACACAAATCTTT 360
||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| |
Sbjct 363 TAGCTCTTCAAGAAGCTGCGGAGGCATATTTGGTTGGTTTGTTTGAAGACACAAATCTCT 422
Query 361 GTGCCATTCATGCAAAGAGGGTTACGATAATGCCTAAAGATGTTCAATTGGCAAGAAGGA 420
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 423 GTGCCATTCATGCAAAGAGGGTTACCATTATGCCTAAAGATGTTCAATTGGCAAGAAGGA 482
Query 421 TTCGTGGAGAGCGTGCTTAGAAATT 445
|||||| ||||||||||||||||||
Sbjct 483 TTCGTGCAGAGCGTGCTTAGAAATT 507
> AT1G75600.1 | Symbols: | Histone superfamily protein | chr1:28390665-28391493
FORWARD LENGTH=531
Length=531
Score = 676 bits (366), Expect = 0.0
Identities = 417/442 (94%), Gaps = 2/442 (0%)
Strand=Plus/Plus
Query 1 TTCTAAGCTATC-AGATTCTTGAAGAAGCCATGGCTCGTACGAAGCAAACCGCGAGAAAA 59
||||||||| || || ||||||| ||||| |||||||||||||||||||| || ||||||
Sbjct 60 TTCTAAGCTCTCAAG-TTCTTGACGAAGCAATGGCTCGTACGAAGCAAACTGCAAGAAAA 118
Query 60 TCACACGGAGGAAAAGCTCCGAGGAAGCAGCTCGCTACCAAGGCGGCGAGGAAATCTGCG 119
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 119 TCACACGGAGGAAAAGCTCCGAGGACTCTGCTCGCTACCAAGGCGGCGAGGAAATCTGCG 178
Query 120 CCGACTACCGGAGGAGTCAAGAAACCTCACCGTTACCGTCCTGGAACCGTCGCTCTTCGT 179
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 179 CCGACTACTGGAGGAGTCAAGAAACCTCACCGTTACCGTCCCGGAACCGTCGCTCTTCGT 238
Query 180 GAGATTCGTAAATACCAGAAGAGCACAGAGTTGTTGATCCGCAAACTTCCATTTCAGCGT 239
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 239 GAGATTCGTAAATACCAGAAGAGCACAGAGTTGTTGATCCGTAAACTTCCTTTTCAACGT 298
Query 240 CTTGTTCGTGAAATAGCCCAAGATTTCAAGACGGATCTGAGATTTCAGAGCCATGCAGTG 299
|||||||||||||| || ||||||| |||||||||||||||||| ||||||||||| |||
Sbjct 299 CTTGTTCGTGAAATCGCTCAAGATTACAAGACGGATCTGAGATTCCAGAGCCATGCGGTG 358
Query 300 TTAGCTCTTCAAGAAGCTGCTGAAGCATATTTGGTGGGTTTGTTTGAAGACACAAATCTT 359
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 359 TTAGCTCTTCAAGAAGCTGCTGAAGCATATTTGGTTGGTTTGTTTGAAGATACAAATCTG 418
Query 360 TGTGCCATTCATGCAAAGAGGGTTACGATAATGCCTAAAGATGTTCAATTGGCAAGAAGG 419
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 419 TGTGCCATTCATGCCAAGAGGGTTACGATCATGCCTAAAGATGTTCAATTGGCAAGAAGG 478
Query 420 ATTCGTGGAGAGCGTGCTTAGA 441
||||||||||||||||||||||
Sbjct 479 ATTCGTGGAGAGCGTGCTTAGA 500
> AT5G10980.1 | Symbols: | Histone superfamily protein | chr5:3472405-3473466
REVERSE LENGTH=714
Length=714
Score = 448 bits (242), Expect = 3e-125
Identities = 362/421 (86%), Gaps = 4/421 (1%)
Strand=Plus/Plus
Query 21 GAAGAAGCCATGGCTCGTACGAAGCAAACCGCGAGAAAAT-CACACGGAGGAAAAGCTCC 79
|||||| | ||||||||||| ||||||||||| || |||| ||| |||||| ||||||||
Sbjct 109 GAAGAAACAATGGCTCGTACCAAGCAAACCGCTAGGAAATCCAC-CGGAGGTAAAGCTCC 167
Query 80 GAGGAAGCAGCTCGCTACCAAGGCGGCGAGGAAATCTGCGCCGACTACCGGAGGAGTCAA 139
||||||||||| || |||||||||||||||||||| || || || ||||||||||||||
Sbjct 168 CAGGAAGCAGCTTGCCACCAAGGCGGCGAGGAAATCAGCACCAACCACCGGAGGAGTCAA 227
Query 140 GAAACCTCACCGTTACCGTCCTGGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAGAA 199
||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 228 GAAGCCTCACCGTTACCGTCCAGGAACCGTCGCTCTTCGTGAGATTCGTAAGTACCAGAA 287
Query 200 GAGCACAGAGTTGTTGATCCGCAAACTTCCATTTCAGCGTCTTGTTCGTGAAATAGCCCA 259
||| || || |||||||||||||| ||||| || |||||||| ||||| |||||||| ||
Sbjct 288 GAGTACTGAATTGTTGATCCGCAAGCTTCCCTTCCAGCGTCTCGTTCGGGAAATAGCTCA 347
Query 260 AGATTTCAAGACGGATCTGAGATTTCAGAGCCATGCAGTGTTAGCTCTTCAAGAAGCTGC 319
|| ||||||||||||||||| |||||||| || || ||||||||||||||||| || ||
Sbjct 348 GGACTTCAAGACGGATCTGAGGTTTCAGAGTCACGCGGTGTTAGCTCTTCAAGAGGCGGC 407
Query 320 TGAAGCATATTTGGTGGGTTTGTTT-GAAGACACAAATCTTTGTGCCATTCATGCAAAGA 378
||| ||||| | || || | ||| || || || ||||| || || ||||| || ||||
Sbjct 408 TGAGGCATACCTAGTTGGACT-TTTCGAGGATACTAATCTCTGCGCTATTCACGCCAAGA 466
Query 379 GGGTTACGATAATGCCTAAAGATGTTCAATTGGCAAGAAGGATTCGTGGAGAGCGTGCTT 438
|||||||||| |||||||| || |||||||||| ||||| ||||||||||| |||||||
Sbjct 467 GGGTTACGATCATGCCTAAGGACATTCAATTGGCTAGAAGAATTCGTGGAGAACGTGCTT 526
Query 439 A 439
|
Sbjct 527 A 527
> AT1G19890.1 | Symbols: ATMGH3, MGH3 | male-gamete-specific histone
H3 | chr1:6905034-6906018 FORWARD LENGTH=640
Length=640
Score = 355 bits (192), Expect = 2e-97
Identities = 349/423 (83%), Gaps = 18/423 (4%)
Strand=Plus/Plus
Query 30 ATGGCTCGTACGAAGCAAACCGCGAGAAAATCACAC-GGAGGAAAAGCTCCGAGGAAGCA 88
||||| |||||||||||||| ||||| ||||| || || ||||||| ||| |||||| |
Sbjct 1 ATGGCACGTACGAAGCAAACTGCGAGGAAATC-TACTGGTGGAAAAGGTCCAAGGAAGGA 59
Query 89 GCTCGCTACCAAGGCGGCGAGGAAATCTGCGCCGA-C-TACC--GGAGGAGTCAAGAAAC 144
|||||||||||||||||||||||| || | ||| | |||| || ||||||||||
Sbjct 60 ACTCGCTACCAAGGCGGCGAGGAAAACT-AGACGACCGTACCGTGGTGGAGTCAAGAGGG 118
Query 145 CTCACCGTTACCGTCCTGGAACCGTCGCTCTTCGTGAGATTCGTAAATACCAGAAGAGCA 204
||||||||| |||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 119 CTCACCGTTTCCGTCCTGGAACCGTCGCTCTTCGTGAGATCCGCAAATACCAGAAGAGTA 178
Query 205 CAGAGTTGTTGATCCGCAAACTT-CCATTTC-AGCGTCTTGTTCGTGAAATAGCCCAAGA 262
| || ||||||||||||||| || || |||| | || |||||||||||||| ||||||||
Sbjct 179 CCGACTTGTTGATCCGCAAA-TTGCC-TTTCCAACGACTTGTTCGTGAAATCGCCCAAGA 236
Query 263 TTTCAAGACGGATCTGAGATTTCAGAGCCATGCAGTGTTAGCTCTTCAAGAAGCTGCTGA 322
||| ||| |||| | || || || |||||||| ||| | || |||||||| || || ||
Sbjct 237 TTTTAAGGTGGATTTAAGGTTCCAAAGCCATGCGGTGCTCGCACTTCAAGAGGCAGCCGA 296
Query 323 AGCATATTTGGTGGGTTTGTTTGAAGACACAAATCTT-TGTGCCATTCATGC-AAAGAGG 380
|||||| |||||||| ||||| |||||||| ||| || ||||| ||||| || ||| |||
Sbjct 297 AGCATACTTGGTGGGGTTGTTCGAAGACACGAAT-TTGTGTGCGATTCACGCCAAA-AGG 354
Query 381 GTTACGATAATG-CCTAAAGATGTTCAATTGGCAAGAAGGATTCGTGGAGAGCGTGCTTA 439
|||||||| ||| || || || |||| ||||| ||| | |||||||| || |||||||
Sbjct 355 GTTACGATCATGTCC-AAGGACATTCAGTTGGCCAGACGCATTCGTGGGGAACGTGCTT- 412
Query 440 GAA 442
|||
Sbjct 413 GAA 415
> AT1G75610.1 | Symbols: | pseudogene, histone H3, identical to
histone H3.2 from Medicago sativa GB:AAB36495 GI:488571, Histone
H3.2, minor Lolium temulentum SP|P11105, histone H3 Tortula
ruralis GI:4574208; contains Pfam profile PF00125 Core
histone H2A/H2B/H3/H4; blastp match of 96% identity and 6.6e-54
P-value to GP|6006364|dbj|BAA84794.1||AP000559 EST D15300(C0425)
corresponds to a region of the predicted gene.~Similar
to histone H3 (AB015760) {Oryza sativa (japonica cultivar-group)}
| chr1:28392729-28393312 FORWARD LENGTH=584
Length=584
Score = 292 bits (158), Expect = 2e-78
Identities = 168/173 (97%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 268 AGACGGATCTGAGATTTCAGAGCCATGCAGTGTTAGCTCTTCAAGAAGCTGCTGAAGCAT 327
|||||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 412 AGACGGATCTGAGATTCCAGAGCCATGCGGTGTTAGCTCTTCAAGAAGCTGCGGAGGCAT 471
Query 328 ATTTGGTGGGTTTGTTTGAAGACACAAATCTTTGTGCCATTCATGCAAAGAGGGTTACGA 387
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 472 ATTTGGTGGGTTTGTTTGAAGACACAAATCTGTGTGCCATTCATGCAAAGAGGGTTACGA 531
Query 388 TAATGCCTAAAGATGTTCAATTGGCAAGAAGGATTCGTGGAGAGCGTGCTTAG 440
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 TAATGCCTAAAGATGTTCAATTGGCAAGAAGGATTCGTGGAGAGCGTGCTTAG 584
Score = 148 bits (80), Expect = 4e-35
Identities = 88/92 (96%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 178 GTGAGATTCGTAAATACCAGAAGAGCACAGAGTTGTTGATCCGCAAACTTCCATTTCAGC 237
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 223 GTGAGATTCGTAAATACCAGAAGAGCACAGAGTTGTTGATCCGTAAACTTCCTTTTCAAC 282
Query 238 GTCTTGTTCGTGAAATAGCCCAAGATTTCAAG 269
|||||||||||||||| |||||||||||||||
Sbjct 283 GTCTTGTTCGTGAAATCGCCCAAGATTTCAAG 314
Score = 132 bits (71), Expect = 4e-30
Identities = 88/96 (92%), Gaps = 2/96 (2%)
Strand=Plus/Plus
Query 94 CTACCA-AGGCGGCGAGGAAATCTGCGCCGACTACCGGAGGAGTCAAGAAACCTCACCGT 152
||| || |||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 55 CTAACATAGGCGGCGAGGAAATCTGCGCCAACTACCGGTGGAGTCAAGAAACCTCACCGT 114
Query 153 TACCGTCCTGGAACCGTCGCTCTTCG-TGAGATTCG 187
|||||||| ||||||||||||||||| | || ||||
Sbjct 115 TACCGTCCCGGAACCGTCGCTCTTCGGTAAGTTTCG 150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25518946676
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5