BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489723
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08900.1 | Symbols: | arginase | chr4:5703347-5705346 FORWA... 1749 0.0
AT4G08870.1 | Symbols: | Arginase/deacetylase superfamily prot... 1181 0.0
> AT4G08900.1 | Symbols: | arginase | chr4:5703347-5705346 FORWARD
LENGTH=1347
Length=1347
Score = 1749 bits (947), Expect = 0.0
Identities = 1043/1089 (96%), Gaps = 7/1089 (1%)
Strand=Plus/Plus
Query 1 GATCTTCAAGTTCCGATCCAATTTCAAATATGTCGAAGATTATTGGGA-AAAGAGGGATT 59
|||||||||||||||||||||||||| ||||||||| ||||||||| | ||| |||||||
Sbjct 124 GATCTTCAAGTTCCGATCCAATTTCAGATATGTCGAGGATTATTGGTAGAAA-AGGGATT 182
Query 60 AACTATATCCATAGACTCAATTCTGCGTCGTTCACGAGCGTATCTGCTTCATCAATCGAG 119
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 183 AACTATATCCATAGACTAAATTCTGCGTCGTTCACGAGCGTATCTGCTTCTTCAATCGAG 242
Query 120 AAAGGGCAAAATCGTGTCATTGATGCTTCGTTAACTCTCATTCGTGAAAGGGCAAAACTA 179
|||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct 243 AAAGGGCAAAATCGCGTGATTGATGCTTCGTTAACTCTTATTCGTGAAAGGGCAAAACTC 302
Query 180 AAAGGAGAGTTAGTGCGTCTTTTAGGTGGAGCTAAAGCTTCAACATCTCTTCTTGGAGTA 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 303 AAAGGAGAGTTAGTGCGTCTTTTAGGTGGAGCTAAAGCTTCAACATCTCTTCTTGGTGTA 362
Query 240 CCACTTGGTCACAACTCTTCTTTTCTTCAAGGTCCTGCTTTTGCTCCTCCTCGTATTAGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 363 CCACTTGGTCACAACTCTTCTTTTCTTCAAGGTCCTGCTTTTGCTCCTCCTCGTATTCGA 422
Query 300 GAAGCTATTTGGTGTGGTAGTACAAACTCTGCAACTGAAGAAGGGAAGGAGTTGAAGGAT 359
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 423 GAAGCTATTTGGTGTGGTAGCACAAACTCTGCCACTGAAGAAGGGAAGGAGTTGAAGGAT 482
Query 360 CCACGGGTTCTAACTGATGTTGGGGATGTTCCAGTACAAGAGATTAGAGATTGTGGGGTT 419
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 483 CCACGGGTTCTAACTGATGTTGGGGATGTTCCGGTACAAGAGATTAGAGATTGTGGGGTT 542
Query 420 GATGATGATAGACTGATGAATGTAATAAGTGAATCTGTGAAGTTGGTGATGGATGAGGAA 479
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 543 GATGATGATAGACTGATGAATGTCATAAGTGAATCTGTGAAGTTGGTGATGGAAGAGGAA 602
Query 480 CCATTGCGCCCGCTGGTCCTAGGTGGAGACCATTCTATATCTTATCCTGTTGTGAGAGCG 539
|||||||| ||| ||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 603 CCATTGCGTCCGTTGGTCTTAGGTGGAGACCATTCCATATCTTATCCTGTTGTGAGAGCG 662
Query 540 GTTTCTGAGAAGCTTGGAGGACCTGTGGACATT-TTGCATCTTGATGCACATCCGGATAT 598
|||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||
Sbjct 663 GTTTCTGAGAAGCTTGGAGGGCCTGTGGACATTCTT-CATCTTGATGCACATCCGGATAT 721
Query 599 ATATGATTGTTTTGAAGGAAATAAGTACTCTCATGCATCTTCTTTTGCTCGTATCATGGA 658
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 ATATGACTGTTTTGAAGGAAATAAGTACTCTCATGCATCTTCTTTTGCTCGTATCATGGA 781
Query 659 AGGTGGCTATGCGCGTAGGCTTTTACAGGTTGGGATCAGATCGATAAACCAGGAAGGACG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 AGGTGGCTATGCGCGTAGGCTTTTACAGGTTGGGATCAGATCGATAAACCAGGAAGGACG 841
Query 719 GGAACAAGGCAAGAGGTTTGGAGTAGAACAGTATGAGATGCGAACCTTCTCAAAAGATCG 778
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 842 GGAACAAGGCAAGAGGTTTGGAGTAGAACAGTATGAGATGCGAACCTTCTCGAAAGATCG 901
Query 779 TCCAATGTTGGAAAATCTGAAACTAGGGGAAGGAGTGAAGGGGGTATACATCTCGATAGA 838
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 902 CCCAATGTTGGAAAATCTGAAATTAGGGGAAGGAGTGAAGGGGGTATACATCTCGATAGA 961
Query 839 CGTTGACTGTCTCGATCCGGCATTTGCACCCGGAGTGTCCCACATCGAACCAGGAGGTCT 898
|||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 962 CGTTGACTGTCTCGATCCGGCATTTGCACCTGGAGTGTCGCATATCGAACCAGGAGGTCT 1021
Query 899 CTCTTTCCGTGATGTCCTTAACATCTTACATAATCTTCAGGCAGATGTTGTTGGGGCTGA 958
|||||||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 1022 CTCTTTCCGTGACGTCCTTAACATCTTACACAACCTTCAGGCAGATGTTGTCGGGGCTGA 1081
Query 959 TGTTGTCGAGTTCAACCCGCAACGTGATACTGTTGACGGCATGACAGCAATGGTTGCTGC 1018
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1082 CGTTGTCGAGTTCAACCCGCAGCGTGATACTGTTGACGGCATGACAGCAATGGTTGCAGC 1141
Query 1019 TAAGCTTGTTAGAGAATTAGCCGCGAAAATCTCGAAATGAAACAGATATGTTACATTGTG 1078
||||||||||||||||||||| |||||||||||||||||||||||| ||| || ||| ||
Sbjct 1142 TAAGCTTGTTAGAGAATTAGCTGCGAAAATCTCGAAATGAAACAGA-ATGGTA-ATTTTG 1199
Query 1079 CAAGTTTGT 1087
| ||||||
Sbjct 1200 GA-GTTTGT 1207
Score = 176 bits (95), Expect = 4e-43
Identities = 124/137 (91%), Gaps = 5/137 (4%)
Strand=Plus/Plus
Query 1065 TATGTTACATTGTGCAAGTTTGTAACATTCATATAGGTTCTTGAATGCAATAAGCCTGGC 1124
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1215 TATGTTTCATCGTGCAAGTTTGTAACATTCATATAGGTTCTTGAATGCAATAAGTCTGGC 1274
Query 1125 TCCATAGATGGA-TAATCGAACAAAGATAATATGAATTCTGATCTTAGGCTGTAATAATA 1183
|||||||| ||| || || |||||| ||||||||||||||||||| ||||| ||| |||
Sbjct 1275 TCCATAGACGGAGTA-TCAAACAAACATAATATGAATTCTGATCTAAGGCTATAA-AAT- 1331
Query 1184 TCAATGTTCATATGCCT 1200
||||||||||||||||
Sbjct 1332 -CAATGTTCATATGCCT 1347
> AT4G08870.1 | Symbols: | Arginase/deacetylase superfamily protein
| chr4:5646439-5648727 REVERSE LENGTH=1284
Length=1284
Score = 1181 bits (639), Expect = 0.0
Identities = 848/950 (89%), Gaps = 10/950 (1%)
Strand=Plus/Plus
Query 115 TCGAGAAAGGGCAAAATCGTGTCATTGATGCTTCGTTAACTCTCATTCGTGAAAGGGCAA 174
|||||| |||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 126 TCGAGACAGGGCAGAACCGTGTCATTGATGCTTCGTTAACTCTCATCCGTGAAAGGGCAA 185
Query 175 AACTAAAAGGAGAGTTAGTGCGTCTTTTAGGTGGAGCTAAAGCTTCAACATCTCTTCTTG 234
|||| ||||||||||||||||| || |||| ||||| |||||| ||||| |||||||||
Sbjct 186 AACTCAAAGGAGAGTTAGTGCGACTCATAGGAGGAGCAAAAGCTACAACAGCTCTTCTTG 245
Query 235 GAGTACCACTTGGTCACAACTCTTCTTTTCTTCAAGGTCCTGCTTTTGCTCCTCCTCGTA 294
|||||||||||||||||||||||||||||||| |||| || || || |||||||||| |
Sbjct 246 GAGTACCACTTGGTCACAACTCTTCTTTTCTTGAAGGCCCAGCCTTGGCTCCTCCTCATG 305
Query 295 TTAGAGAAGCTATTTGGTGTGGTAGTACAAACTCTGCAACTGAAGAAGGGAAGGAGTTGA 354
| || ||||||||||||||||||||||||||||| | |||||||||||||||||| | |
Sbjct 306 TAAGGGAAGCTATTTGGTGTGGTAGTACAAACTCCACCACTGAAGAAGGGAAGGAGCTAA 365
Query 355 AGGATCCACGGGTTCTAACTGATGTTGGGGATGTTCCAGTACAAGAGATTAGAG-ATTGT 413
| |||||||| ||||||| ||||||||| ||| |||| |||||||||||||||| | ||
Sbjct 366 AAGATCCACGTGTTCTAAGTGATGTTGGTGATATTCCGGTACAAGAGATTAGAGAAATG- 424
Query 414 GGGGTTGATGATGATAGACTGATGAATGTAATAAGTGAATCTGTGAAGTTGGTGATGGAT 473
|||||||||||||||||||| ||||| ||| ||||||||||||||||| ||||||||||
Sbjct 425 GGGGTTGATGATGATAGACTTATGAAAGTAGTAAGTGAATCTGTGAAGCTGGTGATGGAA 484
Query 474 GAGGAACCATTGCGCCCGCTGGTCCTAGGTGGAGACCATTCTATATCTTATCCTGTTGTG 533
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 485 GAGGAACCATTGCGCCCGCTGGTCATAGGTGGAGACCATTCCATATCTTATCCTGTTGTG 544
Query 534 AGAGCGGTTTCTGAGAAGCTTGGAGGACCTGTGGACATT-TTGCATCTTGATGCACATCC 592
||||| ||||| ||||| ||||||||||| ||||| ||| || |||||||||||||||||
Sbjct 545 AGAGCTGTTTCGGAGAAACTTGGAGGACCCGTGGATATTCTT-CATCTTGATGCACATCC 603
Query 593 GGATATATATGATTGTTTTGAAGGAAATAAGTACTCTCATGCATCTTCTTTTGCTCGTAT 652
||||||||||| |||||||||| ||| | |||||||||||||||||||||||||||||
Sbjct 604 CGATATATATGACCGTTTTGAAGGCAATTATTACTCTCATGCATCTTCTTTTGCTCGTAT 663
Query 653 CATGGAAGGTGGCTATGCGCGTAGGCTTTTACAGGTTGGGATCAGATCGATAAACCAGGA 712
||||||||||||||||||||| ||||||||||||||||||||||||| |||||| | ||
Sbjct 664 CATGGAAGGTGGCTATGCGCGGCGGCTTTTACAGGTTGGGATCAGATCCATAAACAAAGA 723
Query 713 AGGACGGGAACAAGGCAAGAGGTTTGGAGTAGAACAGTATGAGATGCGAACCTTCTCAAA 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 AGGACGGGAACAAGGCAAGAGGTTTGGAGTAGAACAGTATGAGATGCGAACCTTCTCAAA 783
Query 773 AGATCGTCCAA-TGTTGGAAAATCT-GAAACTAGGGGAAGGAGTGAAGGGGGTATACATC 830
|||||| |||| |||||||||| || |||||||||||||||||||||||| || || |||
Sbjct 784 AGATCG-CCAAATGTTGGAAAA-CTTGAAACTAGGGGAAGGAGTGAAGGGCGTGTATATC 841
Query 831 TCGATAGACGTTGACTGTCTCGATCCGGCATTTGCACCCGGAGTGTCCCACATCGAACCA 890
||||| || ||||||||||||||||||| ||| || | ||||||||||||| ||||||||
Sbjct 842 TCGATCGATGTTGACTGTCTCGATCCGGGATTCGCGCACGGAGTGTCCCACTTCGAACCA 901
Query 891 GGAGGTCTCTCTTTCCGTGATGTCCTTAACATCTTACATAATCTTCAGGCAGATGTTGTT 950
|||||||| |||||||| || ||||||||||| ||||| || ||||||| |||| ||| |
Sbjct 902 GGAGGTCTTTCTTTCCGAGACGTCCTTAACATATTACACAACCTTCAGGGAGAT-TTGGT 960
Query 951 GGGG-CTGATGTTGTCGAGTTCAACCCGCAACGTGATACTGTTGACGGCATGACAGCAAT 1009
|||| |||||||||| |||| ||| || || |||||||| | ||| | |||||| |||||
Sbjct 961 GGGGGCTGATGTTGTTGAGTACAATCCACAGCGTGATACCGCTGATGACATGACGGCAAT 1020
Query 1010 GGTTGCTGCTAAGCTTGTTAGAGAATTAGCCGCGAAAATCTCGAAATGAA 1059
||| || |||||| |||||||||| ||||||| ||||| || |||||||
Sbjct 1021 GGTCGCGGCTAAGTTTGTTAGAGAGCTAGCCGCAAAAATGTCAAAATGAA 1070
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58935439830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5