BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489724
Length=399
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08895.1 | Symbols: | inorganic phosphate transporter famil... 593 3e-169
AT5G43340.1 | Symbols: PHT6, PHT1;6 | phosphate transporter 1;6... 305 2e-82
> AT4G08895.1 | Symbols: | inorganic phosphate transporter family
protein | chr4:5697896-5698615 FORWARD LENGTH=468
Length=468
Score = 593 bits (321), Expect = 3e-169
Identities = 373/399 (93%), Gaps = 0/399 (0%)
Strand=Plus/Plus
Query 1 ATGACCAAGCTAGGGTTTCCACAGACGAGTTTGGCTTGTTCTCCAAGAAATTTCTTTGCC 60
||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||| |
Sbjct 1 ATGACCAAGCTAGGGTTTCCAAAGACGAGATTGGCTTGTTCTCCAAGAAATTCCTTTGTC 60
Query 61 GTCACGGATATCTTCACCACCATAGGATGGTTACCTTCGGCTAAAACCATGAACGCAATC 120
|||||||||| |||||||||| | ||||||||||||||||||||||||||||||||| ||
Sbjct 61 GTCACGGATAGCTTCACCACCTTTGGATGGTTACCTTCGGCTAAAACCATGAACGCACTC 120
Query 121 CAAGAGCTCTACATGATCGCCAAGGCTCAAACCATAATCGCTTGTTGCAGTACCGTTCGT 180
|| ||||||| |||||||| || |||||||||||||||||||||||||||||| |||| |
Sbjct 121 CAGGAGCTCTTCATGATCGTCAGGGCTCAAACCATAATCGCTTGTTGCAGTACAGTTCCT 180
Query 181 GCCATACCGTACCACCATTGGACTTTACCGGCTAACCGGATTGGTTTTGTGGTTTTCTAC 240
||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 181 GCCGTACCGTACCACCATTGGACTTTACCAGCTAACCGGATTGGTTTTGTGATTTTCTAC 240
Query 241 TCTCTCACCTTTTTCTTCTCCAATTTTGGACCTAACGCAACTACGTTCATTGTCCCGGCT 300
||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 TCTTTCACCTTTTTCTTTTCCAATTTTGGACCTAATGCAACTACGTTCATTGTCCCGGCT 300
Query 301 GAGATTTTTCCGGCGAGGATTAGGTCTACTTGTCACGGTATCTCGGCTGCGTCGGGTAAA 360
|||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||
Sbjct 301 GAGATTTTTCCGGCGAGGATTAGGTCGACTTGTCACGGTATCTCCGCGGCGTCAGGTAAA 360
Query 361 GCCGGTGCGATGGTCGGTTCTTTCGGGTTTGCTGCGTTG 399
|||||||| |||||||||||||||||||||||||| |||
Sbjct 361 GCCGGTGCAATGGTCGGTTCTTTCGGGTTTGCTGCTTTG 399
> AT5G43340.1 | Symbols: PHT6, PHT1;6 | phosphate transporter 1;6
| chr5:17393598-17395148 REVERSE LENGTH=1551
Length=1551
Score = 305 bits (165), Expect = 2e-82
Identities = 196/211 (93%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 181 GCCATACCGTACCACCATTGGACTTTACCGGCTAACCGGATTGGTTTTGTGGTT-TTCTA 239
|||||||||||||| |||||||| ||||||||||||||||||||||| || ||| || ||
Sbjct 1171 GCCATACCGTACCATCATTGGACCTTACCGGCTAACCGGATTGGTTTCGTCGTTCTT-TA 1229
Query 240 CTCTCTCACCTTTTTCTTCTCCAATTTTGGACCTAACGCAACTACGTTCATTGTCCCGGC 299
|||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1230 CTCTTTCACATTTTTCTTCTCCAATTTTGGACCTAACGCAACTACTTTCATTGTCCCGGC 1289
Query 300 TGAGATTTTTCCGGCGAGGATTAGGTCTACTTGTCACGGTATCTCGGCTGCGTCGGGTAA 359
||||||||| ||||||||||| ||||| |||||||||||||| ||||| ||||| |||||
Sbjct 1290 TGAGATTTTCCCGGCGAGGATAAGGTCGACTTGTCACGGTATATCGGCGGCGTCTGGTAA 1349
Query 360 AGCCGGTGCGATGGTCGGTTCTTTCGGGTTT 390
|||||||||||||||||||||||||||||||
Sbjct 1350 AGCCGGTGCGATGGTCGGTTCTTTCGGGTTT 1380
Score = 187 bits (101), Expect = 6e-47
Identities = 109/113 (96%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 66 GGATATCTTCACCACCATAGGATGGTTACCTTCGGCTAAAACCATGAACGCAATCCAAGA 125
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 960 GGATATCTTCACCACCATTGGGTGGTTACCTTCGGCTAAAACCATGAACGCAATCCAAGA 1019
Query 126 GCTCTACATGATCGCCAAGGCTCAAACCATAATCGCTTGTTGCAGTACCGTTC 178
||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1020 GCTCTACATGATCGCTAAGGCTCAAACCATAATCGCTTGTTGCAGCACCGTTC 1072
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18850405875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5