BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489725
Length=705
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08878.1 | Symbols: | Major facilitator superfamily protein... 1092 0.0
AT5G43340.1 | Symbols: PHT6, PHT1;6 | phosphate transporter 1;6... 953 0.0
AT5G43370.1 | Symbols: APT1, PHT2, PHT1;2 | phosphate transport... 134 1e-30
AT5G43350.1 | Symbols: ATPT1, PHT1;1 | phosphate transporter 1;... 128 7e-29
> AT4G08878.1 | Symbols: | Major facilitator superfamily protein
| chr4:5683180-5684022 FORWARD LENGTH=843
Length=843
Score = 1092 bits (591), Expect = 0.0
Identities = 663/698 (95%), Gaps = 3/698 (0%)
Strand=Plus/Plus
Query 6 ATGGTACCACTTCACGGCTGTTGTAGTCGCCGGTATGGGTTTTTTCACAGACTCGTATGA 65
||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 1 ATGGTACCATTTCACGGCGGTTGTAGTCGCCGGTATGGG-TTTTTCACAGACTCATATGA 59
Query 66 TCTCTTCGTGATATCTCTCATCACGAAGCTACTTGGCCGGATCTACTATCAGGTTCCTGG 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TCTCTTCGTGATATCTCTCATCACGAAGCTACTTGGCCGGATCTACTATCAGGTTCCTGG 119
Query 126 CTCCTCCTCTCCTGGAAGCCTCCCTGACGGCATCTCTGCCGCCGTGAGCGGTGTAGCCTT 185
|||||||||||||||||||||||| ||||||||||||| |||||||| ||||| |||||
Sbjct 120 CTCCTCCTCTCCTGGAAGCCTCCCCGACGGCATCTCTGTAGCCGTGAGTGGTGTGGCCTT 179
Query 186 CGCCGGAACGTTTCTCGGACAGATTTTCTTCGGATGTCTTGGTGACAAGCTCGGACGTAA 245
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 180 CGCCGGAACGTTTCTCGGACAGATATTCTTCGGATGTCTTGGTGACAAGCTCGGACGTAA 239
Query 246 GAGAGTCTATGGTTTGACACTCTTGATCATGACCATTTGCTCCATTGGTTCTGGTCTTTC 305
||||||||||||||| ||||||||||||||||| ||||||||||||| |||| |||||||
Sbjct 240 GAGAGTCTATGGTTTAACACTCTTGATCATGACTATTTGCTCCATTGCTTCTAGTCTTTC 299
Query 306 TCTT-GGAAACGATCCGAAAACCGTCATGGTAACTCTCTGCTTCTTCCGTTTCTGGCTCG 364
||| || || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 -CTTTGGGAAGGACCCGAAAACCGTCATGGTAACTCTCTGCTTCTTCCGTTTCTGGCTCG 358
Query 365 GGTTTGGCATCGGTGGTGATTATCCTCTCTCGGCTACAATCATGTCCGAGTACGCTAACA 424
|||||||||| |||||||| ||||||||||||||||| ||||||| ||||||||||||||
Sbjct 359 GGTTTGGCATTGGTGGTGACTATCCTCTCTCGGCTACGATCATGTTCGAGTACGCTAACA 418
Query 425 AACGTACTCGAGGCGCGTTCATAGCAGCTGTTTTTGGTATGCAAGGAGTTGGGATACTTG 484
|||||||||| ||||||||||||||| | ||||||| |||||||||||||||||||||||
Sbjct 419 AACGTACTCGCGGCGCGTTCATAGCATCGGTTTTTGCTATGCAAGGAGTTGGGATACTTG 478
Query 485 CCGCAGGAGGGGTTTCTTTACTTGTCTCGTATATTTTTGAGATTAAGTATCCGTCTCGGG 544
|||||||||||||||||||||||||||||||| |||| |||||| ||| |||||||||||
Sbjct 479 CCGCAGGAGGGGTTTCTTTACTTGTCTCGTATCTTTTCGAGATTGAGTTTCCGTCTCGGG 538
Query 545 CCTATATATTGGACGGCGCAGCCTCCACCGTCCCACAGGCGGATTACGTGTGGAGGATCA 604
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CCTACATATTGGACGGCGCAGCCTCCACCGTCCCACAGGCGGATTACGTGTGGAGGATCA 598
Query 605 TCCTGATGGTCGGAGCCTTACCGGCTCTCTTGACATACTACTGGCGTATGAAGATGCCTG 664
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 599 TCCTAATGGTCGGAGCCTTACCGGCTCTCTTGACATACTATTGGCGTATGAAGATGCCTG 658
Query 665 AAACTGCTCGTTACACCGCTCTAGTCGCCAAGAACGCG 702
|||| |||||||||||||||||||||||||||||||||
Sbjct 659 AAACCGCTCGTTACACCGCTCTAGTCGCCAAGAACGCG 696
> AT5G43340.1 | Symbols: PHT6, PHT1;6 | phosphate transporter 1;6
| chr5:17393598-17395148 REVERSE LENGTH=1551
Length=1551
Score = 953 bits (516), Expect = 0.0
Identities = 643/705 (91%), Gaps = 6/705 (1%)
Strand=Plus/Plus
Query 1 ACTCAATGGTACCACTTCACGGCTGTTGTAGTCGCCGGTATGGGTTTTTTCACAGACTCG 60
||||||||||||||| ||||||| ||||||||| ||||||||||||| |||||||||||
Sbjct 52 ACTCAATGGTACCACGTCACGGCGGTTGTAGTCTCCGGTATGGGTTTCTTCACAGACTCA 111
Query 61 TATGATCTCTTCGTGATATCTCTCATCACGAAGCTACTTGGCCGGATCTACTATCAGGTT 120
|| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 112 TACGATCTCTTCGTGATATCTCTTATCACGAAGCTTCTTGGCCGGATCTACTATCAGGTT 171
Query 121 CCTGGCTCCTCCTCTCCTGGAAGCCTCCCTGACGGCATCTCTGCCGCCGTGAGCGGTGTA 180
||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 172 CCTGGCTCCTCCTCTCCCGGAAGCCTCCCTGACGGCATCTCTGCGGCCGTGAGTGGTGTG 231
Query 181 GCCTTCGCCGGAACGTTTCTCGGACAGATTTTCTTCGGATGTCTTGGTGACAAGCTCGGA 240
|||||||| ||||||||| |||||||||||||||| || ||||||||||||||||| |||
Sbjct 232 GCCTTCGCTGGAACGTTTATCGGACAGATTTTCTTTGGGTGTCTTGGTGACAAGCTTGGA 291
Query 241 CGTAAGAGAGTCTATGGTTTGACACTCTTGATCATGACCATTTGCTCCATTGGTTCTGGT 300
||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||
Sbjct 292 CGTAAGAGAGTCTATGGTTTGACTCTCTTGATCATGACCATATGCTCCATTTGTTCTGGT 351
Query 301 CTTTCTCTTGGAA-ACGATCCGAAAACCGTCATGGTAACTCTCTGCTTCTTCCGTTTCTG 359
||||| ||||||| | || ||||||||||||||||||||||||||||||||||| |||||
Sbjct 352 CTTTCCCTTGGAAGA-GACCCGAAAACCGTCATGGTAACTCTCTGCTTCTTCCGCTTCTG 410
Query 360 GCTCGGGTTTGGCATCGGTGGTGATTATCCTCTCTCGGCTACAATCATGTCCGAGTACGC 419
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 411 GCTCGGGTTTGGCATCGGTGGTGACTATCCTCTCTCGGCTACGATCATGTCCGAGTATTC 470
Query 420 TAACAAACGTACTCGAGGCGCGTTCATAGCAGCTGTTTTTGGTATGCAAGG-AGTTGGGA 478
|||||||||||||| || || ||||||||||||||||| ||||||||||| | ||||||
Sbjct 471 CAACAAACGTACTCGCGGTGCTTTCATAGCAGCTGTTTTCGGTATGCAAGGGA-TTGGGA 529
Query 479 TACTTGCCGCAGGAGGGGTTTCTTTACTTGTCTC-GTATATTTTTGAGATTAAGTATCCG 537
| ||||||||||||| || || ||||||||||| | | |||| |||| ||||| ||||
Sbjct 530 TCCTTGCCGCAGGAGCTGTCTCGTTACTTGTCTCAGC-TGTTTTCGAGAGTAAGTTTCCG 588
Query 538 TCTCGGGCCTATATATTGGACGGCGCAGCCTCCACCGTCCCACAGGCGGATTACGTGTGG 597
|| || |||||||||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 589 TCCCGAGCCTATATATTGGATGGTGCAGCCTCCACCGTCCCACAGGCGGATTACGTTTGG 648
Query 598 AGGATCATCCTGATGGTCGGAGCCTTACCGGCTCTCTTGACATACTACTGGCGTATGAAG 657
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct 649 AGGATCATCCTGATGGTCGGCGCCTTACCAGCTCTCTTGACCTACTACTGGCGGATGAAG 708
Query 658 ATGCCTGAAACTGCTCGTTACACCGCTCTAGTCGCCAAGAACGCG 702
||||| ||||| ||||||||||| ||||| ||| |||||||||||
Sbjct 709 ATGCCCGAAACCGCTCGTTACACGGCTCTTGTCTCCAAGAACGCG 753
> AT5G43370.1 | Symbols: APT1, PHT2, PHT1;2 | phosphate transporter
2 | chr5:17415772-17417798 FORWARD LENGTH=1621
Length=1621
Score = 134 bits (72), Expect = 1e-30
Identities = 369/508 (73%), Gaps = 38/508 (7%)
Strand=Plus/Plus
Query 211 TTCTTCGGATGTCTTGGTGACAAGCTCGGACGTAAGAGAGTCTATGGT-TTGACACTCTT 269
|||||||| || || |||||||| |||||||| || | ||| || ||| || ||| ||
Sbjct 305 TTCTTCGGTTGGCTCGGTGACAAACTCGGACGGAAAAAAGTGTACGGTCTT---ACT-TT 360
Query 270 GATCATGACCA--TT-TGCTCCATTGGTTCTGGTCTTTCTCTTGGAAACG-ATCCGAAAA 325
|||||||| | || ||||| | | |||||| || ||| |||| |||| | || ||
Sbjct 361 GATCATGATGATCTTATGCTCTGTCGCTTCTGGCCTCTCTTTTGGCAACGAAGCC-AAGG 419
Query 326 CCGTCATGGTAACTCTCTGCTTCTTC-CGTTTCTGGCTCGGG-TTTGGCATCGGTGGTGA 383
|||||| || || ||||||||| |||| ||| | ||| ||||| || || |||||
Sbjct 420 GTGTCATGACCACCCTTTGCTTCTTCAGGTTT-TGG-TTGGGATTTGGTATTGGAGGTGA 477
Query 384 TTATCCTCTCTCGGCTACAATCATGTCCGAGTACGCTAACAA-ACGTACTCGAGGCGCGT 442
|| || || || || || |||||||| || ||||| ||||| | | || || || || |
Sbjct 478 CTACCCACTTTCTGCCACCATCATGTCTGAATACGCAAACAAGAAG-ACCCGTGGGGCTT 536
Query 443 TCATAGCAGCTGTTTTTGGTATGCAAGGAGTTGGGATACTTGCCGCAGGAGGGGTTTC-T 501
|||| |||||||| || | |||||||| || || || |||| || ||| |||||| |
Sbjct 537 TCATCGCAGCTGTCTTCGCCATGCAAGGTGTCGGTAT-CTTG--GCTGGA--GGTTTCGT 591
Query 502 -TTACT---TGTCTCGTATATTTTTGAGATTAAGTAT-CC-GTCTCGGGCCTATATATTG 555
||| || || | ||| || || | |||| | || | ||| | ||| | |
Sbjct 592 GGCACTCGCAGTATCTTCTATATTCGACAAAAAGT-TCCCAG-CTCCAACATATGCAGTA 649
Query 556 GAC-GGCGCAGCCTC-CACCGTC-CCACAGGCGGATTACGTGTGGAGGATCATCCTGATG 612
|| || || |||| || || | || || | |||||| | ||| | |||||| | |||
Sbjct 650 AACAGG-GC--CCTCTCAACGCCTCCTCAAGTTGATTACATTTGGCGAATCATCGTCATG 706
Query 613 GTCGGAGCCTTACCGGC-TCTCTTGACATACTACTGGCGTATGAAGATGCCTGAAACTGC 671
| || || ||||| || || ||||| ||||||||||||||||||||||||||||||||
Sbjct 707 TTTGGTGCTTTACCCGCAGCT-TTGACTTACTACTGGCGTATGAAGATGCCTGAAACTGC 765
Query 672 TCGTTACACCGCTCTAGTCGCCAAGAAC 699
|||||||||||| | || |||||||||
Sbjct 766 CCGTTACACCGCTTTGGTTGCCAAGAAC 793
> AT5G43350.1 | Symbols: ATPT1, PHT1;1 | phosphate transporter
1;1 | chr5:17399789-17401949 REVERSE LENGTH=1783
Length=1783
Score = 128 bits (69), Expect = 7e-29
Identities = 403/559 (72%), Gaps = 44/559 (8%)
Strand=Plus/Plus
Query 163 GCCGCCGTGAGCGGTGTAG-CCTTCGCCGGAA-CGTTTCTCGGACAGA-TTTTCTTCGGA 219
||||| || | |||||| | |||| | |||| | ||||| || || | | ||||||||
Sbjct 290 GCCGCGGTCAACGGTGTGGCCCTTTG-TGGAACCCTTTCT-GGTCA-ACTCTTCTTCGGT 346
Query 220 TGTCTTGGTGACAAGCTCGGACGTAAGAGAGTCTATGGTTTGACACTCTT-G--ATCATG 276
|| || |||||||| |||||||| || | ||| || ||| | |||| || | || |||
Sbjct 347 TGGCTCGGTGACAAACTCGGACGGAAAAAAGTGTACGGTCT--CACT-TTGGTAATGATG 403
Query 277 ACCATT-TGCTCCATTGGTTCTGGTCTTTCTCTTGGAAACG-ATCCGAAAACCGTCATGG 334
| | || ||||| | | ||||||||| ||| |||| ||| | || || ||||||
Sbjct 404 ATC-TTGTGCTCTGTCGCTTCTGGTCTCTCTTTTGGCCACGAAGCC-AAGGGTGTCATGA 461
Query 335 TAACTCTCTGCTTCTTC-CGTTTCTGGCTCGGG-TTTGGCATCGGTGGTGATTATCCTCT 392
|| || ||||||||| |||| ||| | ||| ||||| || || ||||| || || ||
Sbjct 462 CCACCCTTTGCTTCTTCAGGTTT-TGG-TTGGGATTTGGTATTGGAGGTGACTACCCACT 519
Query 393 CTCGGCTACAATCATGTCCGAGTACGCTAACAA-ACGTACTCGAGGCGCGTTCATAGCAG 451
|| || || |||||||| || ||||| ||||| | | || || || || ||||| ||||
Sbjct 520 TTCTGCCACCATCATGTCTGAATACGCAAACAAGAAG-ACCCGTGGGGCTTTCATCGCAG 578
Query 452 CTGTTTTTGGTATGCAAGGAGTTGGGATACTTGCCGCAGGAGGGGTTTC-T-TTACT--- 506
|||| || | |||||||| || || || |||| || ||| |||||| | |||
Sbjct 579 CTGTCTTCGCCATGCAAGGTGTCGGTAT-CTTG--GCTGGA--GGTTTCGTGGCACTCGC 633
Query 507 TGTCTCGTATATTTTTGAGATTAAGTAT-CC-GTCTCGGGCCTATATATTGGAC-GGCGC 563
|| || | ||| || || | |||| | || | ||| | ||| | | || || ||
Sbjct 634 AGTATCTTCTATATTCGACAAAAAGT-TCCCAG-CTCCAACATATGCAGTAAACAGG-GC 690
Query 564 AGCCTC-CACCGTC-CCACAGGCGGATTACGTGTGGAGGATCATCCTGATGGTCGGAGCC 621
|||| || || | || || | || ||| | ||| | |||||| | ||| | || ||
Sbjct 691 --CCTCTCAACGCCTCCTCAAGTTGACTACATTTGGCGAATCATCGTCATGTTTGGTGCT 748
Query 622 TTACCGGC-TCTCTTGACATACTACTGGCGTATGAAGATGCCTGAAACTGCTCGTTACAC 680
||||| || || ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 749 TTACCCGCAGCT-TTGACTTACTACTGGCGTATGAAGATGCCTGAAACTGCCCGTTACAC 807
Query 681 CGCTCTAGTCGCCAAGAAC 699
|||| | || |||||||||
Sbjct 808 CGCTTTGGTTGCCAAGAAC 826
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34159219960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5