BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489727
Length=1687
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08150.1 | Symbols: KNAT1, BP, BP1 | KNOTTED-like from Arabi... 2488 0.0
> AT4G08150.1 | Symbols: KNAT1, BP, BP1 | KNOTTED-like from Arabidopsis
thaliana | chr4:5147700-5150966 REVERSE LENGTH=1822
Length=1822
Score = 2488 bits (1347), Expect = 0.0
Identities = 1599/1714 (93%), Gaps = 44/1714 (3%)
Strand=Plus/Plus
Query 1 CCTTGACGAATTCTATATTCCTAGTTCGTTTTTTCTTCCTCACATATATCattttcaatt 60
|||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1 CCTTGACGAATTCTATATACCTAGTTCGTTTTTTCTTCCTCAAATATATCTTTTTCAATT 60
Query 61 tatttggtttttctttgggtgcaacttcacctcacaatattttttctttcttttttt-t- 118
||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| |
Sbjct 61 TATTTGGTTTTTCTTTGGGTGCAACTTCACCTCACAA-A-ATTTTCTCTCTTTTTTTATA 118
Query 119 tt-ATTTCGAGTTAGGCCTTTTTGATTTCATAGATGAGTCGTCTAGTCATCTGGATTTGA 177
|| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 119 TTAATTT-GAGTTAGGCCTTTTTGATTTCATAGATGAGTCGTCTAGTCGTCTGGATTTGA 177
Query 178 TGTGGTTTTACTCTTACAGAGACCTTTGATTGAAATAAGAACAAAAGCAAGAATACATAC 237
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TGTGGTTATAGTCTTACAGAGACCTTTGATTGAAATAAGAACAAAAGCAAGAATACATAC 237
Query 238 ATCCTCTTCATCTTGCACCCATCC-tttttatttttttagggtttt-ttttttttt--tt 293
|||||||||||||| ||||||||| ||||||||||| ||||||||| ||||||||| ||
Sbjct 238 ATCCTCTTCATCTTACACCCATCCTTTTTTATTTTTCTAGGGTTTTATTTTTTTTTAATT 297
Query 294 aattttatcccatcaatttttatattcttctctttctctctctcaagt-tttaCTCATCT 352
||||| | | | ||||||||| ||||| |||||||||||| | |||||||||||
Sbjct 298 TATTTTTTTTCTTTGATTTTTATA---TTCTC--TCTCTCTCTCAAATCTTTACTCATCT 352
Query 353 GGGTATGGAAGAATACCAGCATGACAACAGCTCCACTCCTCAAAGAGTAAGTTTCTTGTA 412
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 353 GGGTATGGAAGAATACCAGCATGACAACAGCACCACTCCTCAAAGAGTAAGTTTCTTGTA 412
Query 413 CTCTCCTATCTCTTCTTCCAACAAAAACAATAACACAAGCGAT---------AACAACAG 463
|||||| ||||||||||||||||||||| |||||||||| ||| |||||||
Sbjct 413 CTCTCCAATCTCTTCTTCCAACAAAAACGATAACACAAGTGATACCAACAACAACAACAA 472
Query 464 C---AATAATAGTAGCAATTATGGTCCTGGTTACAATAATACTAATAACAACAATCATCA 520
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 473 CAATAATAATAGTAGCAATTATGGTCCTGGTTACAATAATACTAACAACAACAATCATCA 532
Query 521 CCACCAACACATGTTGTTCCCACATATGAGCTCTCTTCTCCCTCAAA-ATACCGAGAATT 579
|||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||
Sbjct 533 CCACCAACACATGTTGTTTCCACATATGAGCTCTCTTCTCCCTCAAACA-ACCGAGAATT 591
Query 580 GCTTCCGATCGGATCATGATCAA-CC--CAACAACAACAACCCATCTGTTAAATCTGAAG 636
|||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 592 GCTTCCGATCTGATCATGATCAACCCAACAACAACAACAACCCATCTGTTAAATCTGAAG 651
Query 637 CTAGCTCCTCAAGAATCAATCATTACTCTATGTTGATGAGGGCCATCCACAATACGCAAG 696
|||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||
Sbjct 652 CTAGCTCCTCAAGAATCAATCATTACTCCATGTTAATGAGAGCCATCCACAATACTCAAG 711
Query 697 AAGCTAACAACAACACCAATAATGATAACGTAAGCGATGTTGAAGCCATGAAGGCCAAGA 756
||||||||||| | | ||| ||||| ||||||||||||||||||||||||||||| || |
Sbjct 712 AAGCTAACAAC-A-A-CAACAATGACAACGTAAGCGATGTTGAAGCCATGAAGGCTAAAA 768
Query 757 TCATTGCTCATCCTCACTACTCTACCCTCCTACAAGCTTACTTGGACTGCCAAAAGATTG 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 TCATTGCTCATCCTCACTACTCTACCCTCCTACAAGCTTACTTGGACTGCCAAAAGATTG 828
Query 817 GAGCTCCACCTGAAGTGGTTGATAGAATTACGGCCGCACGGCAAGACTTCGAGGCTCGAC 876
||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 829 GAGCTCCACCTGATGTGGTTGATAGAATTACGGCGGCACGGCAAGACTTTGAGGCTCGAC 888
Query 877 AACAGCGGCCAACACTGTCTGTGTCTGCCTCCTCTAGAGACCCGGAATTGGATCAATTCA 936
|||||||| |||||| |||||| ||||||||||||||||||||||| || ||||||||||
Sbjct 889 AACAGCGGTCAACACCGTCTGTCTCTGCCTCCTCTAGAGACCCGGAGTTAGATCAATTCA 948
Query 937 TGGAAGCATATTGTGACATGTTGGTTAAATATCGAGAGGAGCTAACACGGCCCATTCAAG 996
|||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||| |
Sbjct 949 TGGAAGCATACTGTGACATGTTGGTTAAATATCGTGAGGAGCTAACAAGGCCCATTCAGG 1008
Query 997 AAGCAATGGAGTTTATACGTCGTATTGAATCTCAGCTTAGCATGTTGTGTCAGAGTCCCA 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 AAGCAATGGAGTTTATACGTCGTATTGAATCTCAGCTTAGCATGTTGTGTCAGAGTCCCA 1068
Query 1057 TTCATATCCTCAACAATCCTGCAGATGGGAAAAGTGAGGGA-ATGGGATCATCAGACGAA 1115
|||| ||||||||||||||| |||||||| ||||| | ||||||||||||||||||
Sbjct 1069 TTCACATCCTCAACAATCCT---GATGGGAAGAGTGA-CAATATGGGATCATCAGACGAA 1124
Query 1116 GAACAAGAGAATACCAGCGGAGGGGAAACAGAATTACCGGAAATAGACCCGAGGGCGGAA 1175
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1125 GAACAAGAGAATAACAGCGGAGGGGAAACAGAATTACCGGAAATAGACCCGAGGGCCGAA 1184
Query 1176 GATCGGGAACTCAAGAACCACTTGCTGAAGAAGTATAGTGGATACTTAAGCAGTTTGAAG 1235
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GATCGGGAACTCAAGAACCATTTGCTGAAGAAGTATAGTGGATACTTAAGCAGTTTGAAG 1244
Query 1236 CAAGAACTATCCAAGAAGAAAAAGAAAGGTAAACTTCCCAAAGAAGCACGGCAGAAGCTT 1295
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1245 CAAGAACTATCCAAGAAGAAAAAGAAAGGTAAACTTCCTAAAGAAGCACGGCAGAAGCTT 1304
Query 1296 CTCACGTGGTGGGAGTTGCATTACAAGTGGCCGTATCCTTCTGAATCAGAGAAGGTGGCG 1355
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 1305 CTCACGTGGTGGGAGTTGCATTACAAGTGGCCATATCCTTCTGAGTCAGAGAAGGTAGCG 1364
Query 1356 TTGGCGGAATCAACGGGGTTAGATCAGAAACAAATCAACAATTGGTTCATAAACCAAAGA 1415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 TTGGCGGAATCAACGGGGTTAGATCAGAAACAAATCAACAATTGGTTCATAAACCAAAGA 1424
Query 1416 AAGCGTCACTGGAAACCGTCTGAAGACATGCAGTTCATGGTGATGGATGGTCTGCAGCAC 1475
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 AAGCGTCACTGGAAACCATCTGAAGACATGCAGTTCATGGTGATGGATGGTCTGCAGCAC 1484
Query 1476 CCACACCACGCAGCTCTGTACATGGATGGTCATTACATGGGTGATGGACCTTATCGTCTT 1535
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 CCGCACCACGCAGCTCTGTACATGGATGGTCATTACATGGGTGATGGACCTTATCGTCTC 1544
Query 1536 GGTCCATAAGACATCCAAAAGCGTTAGCCACAAAATAACAACTTCTTGTTGCTTTCTTGT 1595
|||||||||||||||||||||| ||||||||| ||||||||| ||| |||||||||||||
Sbjct 1545 GGTCCATAAGACATCCAAAAGCTTTAGCCACATAATAACAACCTCTCGTTGCTTTCTTGT 1604
Query 1596 TACAATTTATGTTTTGAACTCCCCTACATCACTTTGCTACTTATAGCTTTATTGGTTTT- 1654
||||| | |||||||||| |||||||||||| |||||||||||||||||| || |||||
Sbjct 1605 TACAACTCATGTTTTGAATTCCCCTACATCAGTTTGCTACTTATAGCTTTCTTTGTTTTC 1664
Query 1655 AC-CCGTTTTGTAATGTATTATGTCGTTCGGGGA 1687
|| || ||||||||||| ||||||||||||||||
Sbjct 1665 ACGCC-TTTTGTAATGTCTTATGTCGTTCGGGGA 1697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83383105245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5