BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489729
Length=2322
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08160.1 | Symbols: | glycosyl hydrolase family 10 protein ... 3332 0.0
> AT4G08160.1 | Symbols: | glycosyl hydrolase family 10 protein
/ carbohydrate-binding domain-containing protein | chr4:5159034-5162774
REVERSE LENGTH=2516
Length=2516
Score = 3332 bits (1804), Expect = 0.0
Identities = 2137/2300 (93%), Gaps = 13/2300 (1%)
Strand=Plus/Plus
Query 1 CTTAATCTTCTTCGCTTAGAACTTGCTATGGAGAAAAATACAAACATGAACCATACAAGT 60
||||||||||||||||| ||||||||||||||||| |||||||| | |||||||||||||
Sbjct 54 CTTAATCTTCTTCGCTTGGAACTTGCTATGGAGAAGAATACAAATACGAACCATACAAGT 113
Query 61 GATGATGACAATGATAAGCATCACACTAACGAAGAACAGGAGAAGATAATCCTAAACCCT 120
|||||| | ||||||||| |||||||||||||||| ||||||||||| ||| ||||||||
Sbjct 114 GATGATAATAATGATAAGAATCACACTAACGAAGAGCAGGAGAAGATCATCTTAAACCCT 173
Query 121 AATTTTGAGGATGGCCTGAACAACTGGACTGGAAGAGCGTGCAAGATTGTCTTACACGAG 180
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 174 AATTTTGAGGATGGCCTAAACAACTGGACTGGAAGAGCGTGCAAGATTGTCTTACACGAA 233
Query 181 TCCATGGACGGAGGGAAAATCGTACCACTCTCGGGAAAAGTTTTCGCAGCGGCAACACAG 240
||||||||| | ||||| |||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 234 TCCATGGACAGTGGGAAGATCGTACCGCTCTCGGGAAAAGTTTTCGCAGCAGCAACGCAG 293
Query 241 CGTAAAGACACATGGAATGGGATTCAACAGGAGATTTCAGGAAGATTTCA-GAGGAAGCG 299
||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||
Sbjct 294 CGTAAAGACACATGGAATGGGATTCAACAAGAGATTTCAGGAAGA-TTCAGGAGGAAGCG 352
Query 300 TGTGTATGAAGTAACAGCAATGGTTCGAATATTTGGCAACAATGTTACGAA-TGCAACAG 358
|||||||||||||||||| | ||||||||||||||||||||||| || || ||||||||
Sbjct 353 TGTGTATGAAGTAACAGCGGTAGTTCGAATATTTGGCAACAATGTCAC-AAGTGCAACAG 411
Query 359 TACAGGCGACTCTATGGGTCTTAAACGCAAATC-AACGTGAACAATACATAGTCATTGCC 417
|||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 412 TACAAGCGACTCTCTGGGTCTTAAACGCAAA-CAAACGTGAACAATACATAGTCATTGCC 470
Query 418 AATGTGCAGGCGACTGATAAGAACTGGGTGGAGTTGAAGGGTAAATTTGTAATCCAGGGT 477
||||| || || || ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 471 AATGTTCAAGCAACAGATAAGAACTGGGTGGAGTTGAAGGGTAAATTTGTAATCCATGGT 530
Query 478 TCGCCATCGAGGGTGATACTATACCTTGAAGGTCCACCTTCAGGTTCTGACATTCTTCTC 537
||||||||||| || |||||||||||||||||||||||| || | ||||||||||||||
Sbjct 531 TCGCCATCGAGAGTAATACTATACCTTGAAGGTCCACCTCCACGAGCTGACATTCTTCTC 590
Query 538 AACAGTTTAGTTGTTAAACATGCTAAAAGGAATCGTCCATCGCCTCCTCCTTTCTATGAG 597
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 591 AACAGTTTAGTTGTTCAACATGCTAAAAGGAATCGTCCATCGCCTCCTCCTTTCTACGAG 650
Query 598 AATCCCGGTTTCGGAGTCAATATAGTCGAAAACAGTGAAGTGGTAAACGGGGCAACCCAA 657
||||| ||||||||||||||||||||||||||||||||||| || | |||| ||| ||
Sbjct 651 AATCCTGGTTTCGGAGTCAATATAGTCGAAAACAGTGAAGTTTTAGATGGGGGAACTAAA 710
Query 658 CCATGGTTCACCCTAGGAAACTGCAAGTTGAGTGTTGGACAAGGCGCTCCTCGCACTCTG 717
||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 711 CCATGGTTCACTCTAGGGAACTGCAAGTTGAGTGTTGGACAAGGCGCTCCGCGCACTCTG 770
Query 718 CCCCCAATGGCGAGAGACACGCTCGGTCCTCGCAAACCTCTTGGCGGAAGCTACATCCTC 777
|| |||||||||||||||||||| ||||||| ||||||||| || |||| ||||||| |
Sbjct 771 CCTCCAATGGCGAGAGACACGCTAGGTCCTCACAAACCTCTAGGTGGAAACTACATCGTT 830
Query 778 GTGACTAACAGAACGCAGACTTGGATGGGTCCGGCTCAGATGATAACCGATAAAATCAAA 837
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 831 GTGACTAACAGAACGCAGACTTGGATGGGTCCTGCTCAGATGATAACCGATAAAATCAAA 890
Query 838 CTCTTCTTGACATATCAAGTTTCAGCGTGGGTCAAAATTGGTGTGGGAGTGAGTGGTAGT 897
|||||||||||||||||| | ||||| |||||||| ||||||||||||| |||||||||
Sbjct 891 CTCTTCTTGACATATCAAATCTCAGCTTGGGTCAAGCTTGGTGTGGGAGTAAGTGGTAGT 950
Query 898 AGTATGAGTCCTCAAAATGTGAACATTGCACTTAGCGTCGATAACCAATGGGTCAATGGA 957
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 951 AGTATGAGTCCTCAGAATGTGAACATTGCACTTAGCGTCGATAACCAATGGGTCAACGGA 1010
Query 958 GGACAAGTCGAGGCCACCCTTGGTGATACATGGCATGAAATCGGCGGAACCTTTAGGCTT 1017
||||||||||||| ||| |||||||||||||||||||||| | |||| | ||||||||
Sbjct 1011 GGACAAGTCGAGGTCACAGTTGGTGATACATGGCATGAAATAGCCGGATCTTTTAGGCTA 1070
Query 1018 GAGAAGCAGCCACAAAACGTTATGGTTTACGTTCAAGGTCCTGCAGCTGGTATCGATTTG 1077
||||| ||||||||||||||||||||||||||||||||||||| |||||| || ||||||
Sbjct 1071 GAGAAACAGCCACAAAACGTTATGGTTTACGTTCAAGGTCCTGGAGCTGGCATTGATTTG 1130
Query 1078 ATGATCGCGGGACTGCAGATTTTTCCCGTGGATCGTCGAGACCGTGTCAGATGTCTCAAA 1137
|||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1131 ATGATCGCGGCTCTGCAGATTTTCCCCGTGGATCGTCGAGAACGTGTCAGATGTCTCAAA 1190
Query 1138 AGACAAGTTGATCAGGTACGTAAGCGCGACATTGTCTTGAAATTCTCCGGACT--A-GAC 1194
|||||||||||| ||||||||||||||||||| || ||||||||||| ||||| | |||
Sbjct 1191 AGACAAGTTGATGAGGTACGTAAGCGCGACATCGTGTTGAAATTCTCAGGACTAAACGAC 1250
Query 1195 GAGGACTCCTCCGATTTGTTTCCTTACATAGTGAAGGTTAAACAAACATACAACAGTTTC 1254
|| || |||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1251 GACGAATCCTTTGATTTGTTTCCTTACATAGTGAAAGTGAAACAAACATACAACAGTTTC 1310
Query 1255 CCTGTAGGAACATGCATTAACAGAACAGACATAGACAATGAAGACTTTGTAGATTTCTTC 1314
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 CCAGTAGGAACATGCATCAACAGAACAGACATAGACAATGAAGACTTTGTAGATTTCTTC 1370
Query 1315 ACAAAGAACTTCAATTGGGCAGTGTTCGGAAACGAGCTTAAATGGTACTCAACAGAAGCC 1374
||||||||||| || ||||||||||||||||||||||| ||||||||| | ||||||||
Sbjct 1371 ACAAAGAACTTTAACTGGGCAGTGTTCGGAAACGAGCTCAAATGGTACGCGACAGAAGCG 1430
Query 1375 GAACGAGGAAAGGTAAATTACCAAGACGCAGACGACATGTTAGATCTCTGCATTGGTAAC 1434
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1431 GAACGTGGAAAGGTAAATTACCAAGACGCAGACGACATGTTAGATCTCTGCATTGGCAAC 1490
Query 1435 AACATAAACGTTAGAGGACATTGCATCTTCTGGGAAGTTGAATCCACTGTTCAGCCATGG 1494
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1491 AACATAAACGTTAGAGGACATTGTATCTTCTGGGAAGTTGAATCCACAGTTCAGCCATGG 1550
Query 1495 GTTCGGCAGCTTAACAAAACCGATCTTATGAACGCGGTCCAAAGGCGTCTCACGGATCTT 1554
||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1551 GTTCGCCAGCTTAACAAAACCGATCTTATGAACGCGGTACAAAAGCGTCTCACGGATCTT 1610
Query 1555 CTGACACGATACAAAGGTAAATTCAAGCACTACGATGTCAACAACGAGATGCTTCATGGT 1614
|||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1611 TTGACGCGGTACAAAGGTAAATTCAAGCACTATGATGTCAACAACGAGATGCTTCATGGT 1670
Query 1615 TCTTTCTATCAAGACAAACTTGGAAAAGGTGTAAGAGCACTTATGTTCAACATTGCACAC 1674
|||||||||||||| | |||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1671 TCTTTCTATCAAGATAGACTTGGAAAAGGTGTAAGAGCACTCATGTTCAATATTGCACAT 1730
Query 1675 AAGCTTGATCCATCTCCTCTGCTTTTCGTAAACGATTATCATGTTGAAGACGGGGATGAC 1734
|||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1731 AAGCTTGATCCATCTCCTTTGCTTTTCGTTAACGATTATCATGTTGAGGACGGGGATGAC 1790
Query 1735 ACACGTTCGTCCCCCGAGAAGTATATAAAACTTGTTCTTGATTTGGAAGCGCAAGGAGCA 1794
| |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1791 CCGCGTTCGTCTCCCGAGAAGTATATAAAACTTGTACTTGATTTGGAAGCTCAAGGAGCA 1850
Query 1795 A-TAGTAGGAGGGATTGGGATCCAAGGACATATAGATAGCCCTGTTGGAGCTATTGTTTG 1853
| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1851 ACT-GTAGGAGGGATTGGGATCCAAGGACATATAGATAGTCCTGTTGGAGCTATTGTTTG 1909
Query 1854 CTCTGCTCTTGATAAGCTCTCTGTTCTTGGTCGTCCCATTTGGTTCACAGAGCTTGATGT 1913
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1910 TTCTGCTCTTGATATGCTCTCTGTTCTTGGTCGTCCCATTTGGTTCACAGAGCTTGATGT 1969
Query 1914 CTCTTCGAGTAATGAATATGTTAGAGGAGAAGATCTTGAAGTTATGTTGTGGGAAGCATT 1973
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1970 CTCTTCGAGTAATGAATATGTTAGGGGAGAGGATCTTGAAGTTATGTTGTGGGAAGCATT 2029
Query 1974 TGCCCACCCTGCAGTTGAAGGAATAATGCTATGGGGTTTCTGGGAACTATCTATGAGTAG 2033
||| |||||| ||||||||||||||||| ||||||| |||||||| ||||||||||||||
Sbjct 2030 TGCTCACCCTTCAGTTGAAGGAATAATGTTATGGGGGTTCTGGGAGCTATCTATGAGTAG 2089
Query 2034 AGAGAACGCGAATTTGGTGGAGGGAGAAGGAGAAGTAAACGAAGCCGGGAAAAGATTTCT 2093
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 2090 AGAGAACGCGAATCTGGTGGAGGGAGAAGGAGAAGTAAACGAAGCCGGAAAAAGATTT-T 2148
Query 2094 T-GAGGTGAAAGAAGAATGGTTATCTCATGCATATGGGATCATTAATGATGAATCAGAGT 2152
| ||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 2149 TAGAGGTGAAACAAGAATGGTTATCTCATGCATATGGGATCATCAATGATGAGTCAGAGT 2208
Query 2153 TCACATTCAAAGGCTATCATGGGACTTACGCCGTTGAAGTTTGTACTCCGGCTGGGATTG 2212
||||||||| |||||| ||||||||||| ||||| ||| |||||||||| ||||||||||
Sbjct 2209 TCACATTCAGAGGCTACCATGGGACTTATGCCGTCGAAATTTGTACTCCAGCTGGGATTG 2268
Query 2213 TTCTCAAAACGTTCGTTGTCGACAAAGGAGACACTCCACTTATTATATCCATTGATCTCT 2272
|||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||
Sbjct 2269 TTCTCAAAACGTTCGTTGTCGAAAAAGGAGACACTCCACTTGTTATCTCCATTGATCTCT 2328
Query 2273 CTTGTTTGTGATGTTTTTGT 2292
||| |||||||||||| |||
Sbjct 2329 CTTCTTTGTGATGTTTGTGT 2348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115260451320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5