BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489736

Length=484
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G08230.1 | Symbols:  | glycine-rich protein | chr4:5187785-5...   588    2e-167


> AT4G08230.1 | Symbols:  | glycine-rich protein | chr4:5187785-5189641 
REVERSE LENGTH=671
Length=671

 Score =  588 bits (318),  Expect = 2e-167
 Identities = 409/451 (91%), Gaps = 14/451 (3%)
 Strand=Plus/Plus

Query  1    AAGAAGAAGAACCCAGAATTTTACGTCAATGGCATACGTCGAAGGAGGTGTGGTTAAAGC  60
            |||||||||||||||||||| ||| | |||||| ||||||||||||||||||||||||||
Sbjct  40   AAGAAGAAGAACCCAGAATTCTACTTTAATGGCGTACGTCGAAGGAGGTGTGGTTAAAGC  99

Query  61   GAAGCGGCCAATATGGAGACTAAGGACGATCAAAGATTTCTTCTTGTCCATCATTAATCT  120
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  100  GAAGAGGCCAATATGGAGACTAAGGACGATCAAAGATTTCTTCTTGTCCATCATTAATCT  159

Query  121  GATACAAGTCTTCTTTGTGACCATGTTCTCGATGGAGAAATCAGATGCATACAGGAAAGG  180
             ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct  160  AATACAAGTCTTCTTTGTAACCATGTTTTCGATGGAGAAATCAGATGCATACAGGAAAGG  219

Query  181  CTCTAAGGCTAACAAGAAgtggggtgg---cttggg-gg-g-tgggggcggtggcggtgg  234
            ||||||| |||| ||||||||||||||   | |||| || | ||| || || ||||| ||
Sbjct  220  CTCTAAGCCTAATAAGAAGTGGGGTGGTGGCATGGGTGGCGGTGGTGGTGGAGGCGGAGG  279

Query  235  tggtggtggtggtggtggtggtagcggtggtggACCTCCTCGTGGGGGCCTCGACAATGT  294
              |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  280  CAGTGGCGGTGGTGGTGGTGGTAGGGGTGGTGGACCTCCTCGTGGGGGCCTCGACAATGT  339

Query  295  GCGTGGCTTGAATGATATCCGTGGAGCTGACCACAATTCCCTACCGGCATGTGGCTCGTG  354
             ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  340  TCGTGGTTTGAATGATATCCGTGGAGCTGACCACAATTCCCTACCTGCATGTGGCTCGTG  399

Query  355  CTGTGGCTAAGCCTTGATTC-GTG-----TGGAGCGTCCAAGAATAAACGAAGGGATATA  408
            |||||||||| ||||| ||  |||     ||||||| |||||||||||||||||||||||
Sbjct  400  CTGTGGCTAATCCTTGTTTGTGTGGACAGTGGAGCGCCCAAGAATAAACGAAGGGATATA  459

Query  409  TTATATAT--ACATATTATTTAGTGTTGAAA  437
            | ||||||  |||||||| ||||||||||||
Sbjct  460  TCATATATTTACATATTACTTAGTGTTGAAA  490


 Score = 76.8 bits (41),  Expect = 2e-13
 Identities = 46/48 (96%), Gaps = 1/48 (2%)
 Strand=Plus/Plus

Query  438  TCTGGTGTA-TTTGTATTTGGGTCTAATCAAAGCTTTTTGTATTTAGA  484
            ||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct  531  TCTGGTGTATTTTGTAATTGGGTCTAATCAAAGCTTTTTGTATTTAGA  578



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23057473473


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5