BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489738
Length=610
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08240.2 | Symbols: | unknown protein; Has 33 Blast hits to... 776 0.0
> AT4G08240.2 | Symbols: | unknown protein; Has 33 Blast hits
to 33 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:5194671-5196761 FORWARD
LENGTH=694
Length=694
Score = 776 bits (420), Expect = 0.0
Identities = 509/549 (93%), Gaps = 18/549 (3%)
Strand=Plus/Plus
Query 1 GAGATTGAGAGAGCGATGAGAGGAGTCGGAGGTCCGTTGCTGTCAATCGGAGATCTTCTC 60
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 28 GAGATTGAGAGAGCAATGAGAGGTGTCGGAGGTCCGTTGCTGTCAATCGGAGATCTTCTC 87
Query 61 GCCGATCTCGGTGAAGAAACTGGCGACTCACCGGAAAA-CAATCCAAATCCTGACA-ATT 118
|||||||||||||| ||||||||| |||| ||| |||| | ||||||||||||| | ||
Sbjct 88 GCCGATCTCGGTGATGAAACTGGCCACTCCCCGCAAAATC-ATCCAAATCCTGA-AGTTT 145
Query 119 CTTCAATATCAGACTCTGATGATACCATCTCTGGACCGTTGGATCTAACCCGACTCTTTC 178
| |||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 146 CATCAAAATCATACTCTGATGATACCATCTCTGGACCCTTGGATCTAACCCGACTCTTTC 205
Query 179 AGGAAAACTATGATAAACTTAACGATGCGTTTGCTGGTTCTGATCACTCATGGACCTCCC 238
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 AGGAGAACTATGATAAACTTAACGATGCGTTTGCTGGTTCTGATCACTCATGGACCTCCC 265
Query 239 TAACATTGGAGCTCTGCACTTCCCTAGAAACTGCTAACAAGTTGGTCCATGCCACAACCA 298
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 266 TAACATTAGAGCTCTGCACTTCCCTAGAGACTGCTAACAAGTTGGTCCATGCCACAACCA 325
Query 299 CAAATGCTAGATTGTTGTCAGAGAAGGTGGAAGAACTCGAGAAAATAGTGAAACGAGGAG 358
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 326 CAAATGCTAGATTGTTGTCAGAGAAGGTTGAAGAACTCGAGAAAATAGTGAAACGAGGAG 385
Query 359 ACTCTGCAGTGGCAGCTGCCAGATCGGTTCATGCCACGGTTAACCAGAAAGGATTACCCT 418
|||| ||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 386 ACTCAGCAGTCGCAGCTGCCAGAACGGTTCACGCCACGGTTAACCAGAAAGGATTACCCT 445
Query 419 CTGCCTGAACAGTTAGGACATATAA-A----T--------GCTTTACCAAGTGGTCCTGC 465
|| | ||| |||||||||||||||| | | ||||||||||||||||||||
Sbjct 446 CTACGTGATCAGTTAGGACATATAACAAACATCATATAATGCTTTACCAAGTGGTCCTGC 505
Query 466 TGCTTCTTACAAGGACCACAGGTTGTTCGACCTCCCTGAAAGGGGACCATATACTTT-AG 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 506 TGCTTCTTACAAGGACCACAGGTTGTTCGACCTCCCTGAAAGGGGACCATATACTTTTAG 565
Query 525 ATTTGACTT 533
|||||||||
Sbjct 566 ATTTGACTT 574
Score = 121 bits (65), Expect = 1e-26
Identities = 79/86 (92%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 525 ATTTGACTTTAAATATTTACTTAAAAATATAGAACTCTTACCCTTTTGGGTCCTACTACA 584
||||||||| ||| ||||||||| |||||| |||||| ||| || |||||||||||||||
Sbjct 609 ATTTGACTTCAAAGATTTACTTATAAATATGGAACTCGTACTCTCTTGGGTCCTACTACA 668
Query 585 CTATCTATATAATTCTGCATTGCCCG 610
||||||||||||||||||||||||||
Sbjct 669 CTATCTATATAATTCTGCATTGCCCG 694
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29386975995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5