BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489740
Length=1490
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08290.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 2309 0.0
> AT4G08290.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr4:5238906-5241034 FORWARD LENGTH=1510
Length=1510
Score = 2309 bits (1250), Expect = 0.0
Identities = 1421/1502 (95%), Gaps = 17/1502 (1%)
Strand=Plus/Plus
Query 1 ATAGtttttgttttttcttttG-----CTACATGACTCTCGATCGAGGGAAAAAACTAGT 55
||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATAGTTTTTGTTTTTCCTTTTGCTACTCTACATGACTCTCGATCGAGGGAAAAAACTAGT 60
Query 56 TCTCATGTTTATCCAAAACTCTATATCACCTTTTTGATGTTTTTATATAAGAAGACTCGT 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 TCTCATGTTTATCCAAAACTCTATATCACCTTTTTGATGTTTTTATATAAGAAGACTTGT 120
Query 116 TCAT-CATACTCTTTCAATAACCAGCTAGACAG--aaaaaaaTTACACAAAAAATTTCAA 172
|||| |||||||||||||||| | || ||||| ||||||| || ||| ||||||||||
Sbjct 121 TCATCCATACTCTTTCAATAA-C--CTTGACAGAAAAAAAAAATAAACACAAAATTTCAA 177
Query 173 TAACCATGGAGGGTGTTAGTGCAACTATGCATAAGTTTAGGCCTTATTTGTTAATGATAT 232
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 178 TAACCATGGAGGGTGTTAGTGCAACTATGCATAAGTTAAGGCCTTATTTGTTAATGATCT 237
Query 233 TTTTGCAATTTGGAGCAGCAGGAACATATATTGTTATTATGGCCACTCTTAACCAAGGCC 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTTTGCAATTTGGAGCAGCAGGAACATATATTGTTATTATGGCCACTCTTAACCAAGGCC 297
Query 293 AGAACCGTTACGTCGTAATTGTGTATCGTAATCTTGTGGCTGCTCTTGTCCTTGCACCTT 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AGAACCGTTACGTCGTAATTGTGTATCGTAATCTTGTGGCTGCTCTTGTCCTTGCACCTT 357
Query 353 TTGCACTCATCTTTGAAAGGAAAGTGAGGCCGAAGATGACACTATCGGTTTTCTGGAAAA 412
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 358 TTGCACTCATCTTTGAAAGGAAAGTGAGGCCGAAGATGACACTATCGGTTTTGTGGAAAA 417
Query 413 TAATGGCACTTGGTTTCTTAGAGCCAGTCTTGGATCAGGGTTTTGCTTACTTGGGGATGA 472
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 418 TAATGGCACTTGGTTTCTTAGAGCCAGTCTTGGATCAGGGTTTTGGTTACTTGGGGATGA 477
Query 473 ATATGACATCAGCAACATATACATCTGCGATCATGAACATTCTTCCTTCGGTCACATTTA 532
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 478 ACATGACATCAGCAACATATACATCTGCGATCATGAACATTCTTCCTTCTGTCACATTTA 537
Query 533 TAATAGCTTGGATTTTAAGAATGGAGAAAGTGAACATAGCAGAGATACGAAGCAAAGCAA 592
||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||
Sbjct 538 TAATAGCTTGGATTTTAAGAATGGAGAAAGTTAACATAGCGGAGGTACGAAGCAAAGCAA 597
Query 593 AGATAATCGGGACATTGGTGGGTCTTGGAGGGGCATTGGTAATGACATTGTACAAAGGTC 652
|||| || ||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 598 AGATCATTGGGACATTGGTGGGTCTTGGAGGGGCACTAGTAATGACATTGTACAAAGGTC 657
Query 653 CGCTTATTCCTTTACCATGGTCTAACCAGACTATGGATCAACAAAACGGACATACCAATA 712
|||||||||||||||| |||||||||| || |||||||||||||||||||||||| ||||
Sbjct 658 CGCTTATTCCTTTACCGTGGTCTAACCCGAATATGGATCAACAAAACGGACATACAAATA 717
Query 713 GTTCAGAAGACCATAACAATTGGGTTGTTGGAACCTTGTTGATACTCCTCGGTTGTGTTG 772
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 718 ATTCACAAGACCATAACAATTGGGTTGTTGGAACCTTGTTGATTCTCCTCGGTTGTGTTG 777
Query 773 CTTGGTCTGGTTTTTATGTTTTACAGTCCATAACAATAAAGACATATCCAGCCGATCTCT 832
|||||||||||||||||||||||||||| |||||||||||||| || || |||||||| |
Sbjct 778 CTTGGTCTGGTTTTTATGTTTTACAGTCGATAACAATAAAGACGTACCCTGCCGATCTTT 837
Query 833 CACTATCAGCCTTAATATGCCTAGCCGGGGCTGTCCAAAGCTTCGCTGTAGCACTTGTGG 892
|| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 838 CATTATCAGCCTTAATATGCCTAGCCGGGGCTGTCCAAAGCTTCGCGGTAGCGCTTGTGG 897
Query 893 TGGAGCGCCACTCC-AGCGGATGGGCGGTTGGATGGGATGCAAGGCTTTTTGCACCTCTT 951
||||| | ||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 898 TGGAGAGACAC-CCTAGCGGATGGGCGGTTGGTTGGGATGCAAGGCTTTTTGCACCTCTT 956
Query 952 TACACGGGCATAGTAAGCTCGGGGATAACATACTACGTTCAAGGGATGGTTATGAAGACG 1011
|| || || ||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 957 TATACAGGAATAGTTAGCTCGGGGATAACGTACTATGTTCAAGGGATGGTTATGAAGACG 1016
Query 1012 AGAGGACCAGTTTTTGTCACTGCCTTTAACCCACTCTGCATGATTCTTGTAGCTCTCCTT 1071
||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1017 AGAGGGCCAGTTTTTGTTACTGCCTTTAACCCTCTCTGCATGATTCTTGTAGCTCTCATT 1076
Query 1072 GCCTCTTTTATTCTTCATGAACAAATCCATTTCGGATGTGTAATAGGAGGGGCCGTGATC 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1077 GCCTCTTTTATTCTTCATGAACAAATCCATTTCGGATGTGTAATAGGAGGGGCAGTGATC 1136
Query 1132 GCAGCGGGATTGTATATGGTAGTTTGGGGAAAAGGAAAAGACTATGAAGTATCAGGATTA 1191
|| ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1137 GCCGCGGGTTTGTATATGGTTGTTTGGGGAAAAGGAAAAGACTATGAAGTATCCGGATTA 1196
Query 1192 GATATCCTTGAAAAGAATAGCCTCCAAGAATTGCCAATCACAACTAAAGGTGACGATGAC 1251
||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct 1197 GATATCCTTGAAAAGAATAGCCTCCAAGAATTGCCTATCACAACTAAAAGTGAGGATGAC 1256
Query 1252 AA-A--TTGGTTTCTTCTATAAGCGACAACAGCAATGTGACCATTCCCGGTGGTGTGCAT 1308
|| | ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1257 AACAAATTGGTTTCTTCTATAAGCGACAACAGCAATGTGACCATTCCTGGTGGTGCGCAT 1316
Query 1309 CGTAACACATCTGGAATATAAGTGAAGAAAGTATTTCTCGAGTTATAAATACATATTTGT 1368
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1317 AGTAACACATCTGGAATATAAGTGAAGAAAGCATTTCTCGAGTTATAAATACATATTTGT 1376
Query 1369 ATTCGACTAAAATAAATACATATGTATTTGTATGCATTTGGTATGAAATACGTTGAAATT 1428
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1377 ATTCGACTAAAATAAATACATATGTATTTGTATGCATTTGGTATGAAATACAT-GAAATT 1435
Query 1429 ATTTTTATGTTTTGACAGTTACATAAGTTATAGTTGGTCATGTCCAAATCACACTAAAAC 1488
||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| |||||
Sbjct 1436 ATTTTTATGTTTTGATAGTTACATAAGTTGTAGTTGGTCAGGTCCAAATCACACAAAAAC 1495
Query 1489 AA 1490
||
Sbjct 1496 AA 1497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73493597880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5