BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489742
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08300.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 1821 0.0
> AT4G08300.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr4:5244891-5248342 FORWARD LENGTH=1444
Length=1444
Score = 1821 bits (986), Expect = 0.0
Identities = 1173/1259 (93%), Gaps = 30/1259 (2%)
Strand=Plus/Plus
Query 81 CCTCTCAAACCAAGGAAGAAAATGAAAGGAGGAAAGATGGATAAATTGAAGCCAATAATA 140
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 CCTCTCAAATCGAGGAAGAAAATGAAAGGAGGAAAGATGGATAAATTGAAGCCAATAATA 172
Query 141 GCAATCATATCACTCCAATTTGGATATGCAGGCATGTACATCATTACTATGGTCTCCTTC 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 173 GCAATCATATCACTCCAATTTGGATATGCAGGCATGTACATCATTACTATGGTCTCCTTC 232
Query 201 AAGCATGGCATGAACCATTGGATCCTTGCTACTTACCGTCATGTCGTCGCCACAATTGTC 260
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 233 AAGCATGGCATGAACCATTGGATCCTTGCTACTTACCGACATGTCGTCGCCACAATTGTC 292
Query 261 ATAGCTCCTTTTGCTCTCATTCTCGAGAGGAAAGTAAGGCCTAAGATGACATGGCCATTG 320
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 293 ATAGCTCCTTTTGCTCTCATTCTCGAGAGGAAAATAAGGCCTAAGATGACATGGCCATTG 352
Query 321 TTCCTTAGGATTCTTGCCCTCGGATTCCTAGAACCACTTTTGGACCAGAACTTGTACTAC 380
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 353 TTCCTTAGGATTCTTGCCCTTGGATTCCTAGAACCACTTTTGGACCAGAACTTGTACTAC 412
Query 381 ATAGGAATGAAAGCCACGTCAGCAACGTATAGTTCTGCCTTTGTTAATGCACTTCCCGCA 440
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 ATAGGAATGAAAGCCACGTCAGCAACGTATAGTTCTGCCTTTGTTAATGCACTTCCCGCC 472
Query 441 ATTACTTTCATAATGGCCGTCATTTTCAGGATAGAAACTGTAAACTTGAAGAAGACACGA 500
||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 473 ATTACCTTCATAATGGCTGTCATTTTCAGGATAGAAACTGTAAATTTGAAGAAGACACGA 532
Query 501 AGTCTTGCAAAAGTGATTGGAACAGCAATAACTGTGGGAGGAGCTATGGTTATGACGTTG 560
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 533 AGTCTTGCAAAAGTGATTGGAACAGCAATAACTGTGGGAGGAGCAATGGTTATGACGTTG 592
Query 561 TATAAAGGTCCAGCCATTGAGCTCTTTAAGAGTGCTCATACCTCTTTACACGGCGGCTCC 620
|| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 593 TACAAAGGTCCAGCCATTGAGCTCTTTAAGACTGCTCATAGCTCTTTACACGGCGGCTCC 652
Query 621 TCAGGTAGCTCCTCCGAGACCACTGATCAGAATTGGGTTACCGGAACTCTAGCTGTTATG 680
|| || | ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 653 TCGGGCACCTCCTCCGAGACCACTGATCAGAATTGGGTTACCGGAACTCTAGCGGTTATG 712
Query 681 GGTAGTATCAC-AGCTTGGGCAGGTTTCTTTATTTTACAATCGTTCACGTTGAAAAAATT 739
||||||||||| | |||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 713 GGTAGTATCACCA-CTTGGGCAGGTTTCTTCATTCTACAATCGTTCACGTTGAAAAAATA 771
Query 740 TCCGGCGGAGCTGTCACTAGTGATGTGGATTTGCGCCATGGGAACGGTCTTAAACACCAT 799
|||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 772 TCCGGCTGAGCTTTCGCTAGTGATGTGGATTTGTGCCATGGGAACGGTCTTAAACACCAT 831
Query 800 CGCTTCGCTCATAATGGTGCGTGATGCGAGCGCATGGAAAGTCGGTATGGATTCGGGCAC 859
||||||||||||||||||||| || | ||||||||||||||||||||||| ||||||||
Sbjct 832 CGCTTCGCTCATAATGGTGCGCGACGTAAGCGCATGGAAAGTCGGTATGGACTCGGGCAC 891
Query 860 ACTTGCAGCTGTTTACTCCGGAGTTGTTTGTTCGGGTATGGCGTATTACATACAAAGCAT 919
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 892 ACTTGCGGCTGTTTACTCCGGAGTGGTTTGTTCGGGTATGGCGTATTACATACAAAGCAT 951
Query 920 TGTTATTAGGGAACGAGGCCCGGTTTTTACGACATCATTTAGTCCTATGTGCATGATCAT 979
||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 952 TGTGATTAGGGAACGAGGTCCGGTTTTTACGACATCGTTTAGTCCTATGTGCATGATCAT 1011
Query 980 CACTGCTTTCCTGGGCGTGTTAGTTTTGGCTGAAAAGATTCACCTTGGAAGTATAATCGG 1039
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 CACTGCTTTCCTCGGCGTGTTAGTTTTGGCTGAAAAGATTCACCTTGGAAGTATAATCGG 1071
Query 1040 GGCGATTTTCATCGTCTTTGGGCTATATAGCGTGGTGTGGGGAAAAGCTAAGGACGAAGT 1099
||||||||| |||||||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct 1072 GGCGATTTTTATCGTCTTCGGGCTATATAGCGTTGTGTGGGGGAAAGCTAAGGACGAAGT 1131
Query 1100 GATTTCCGCCGAAGAGAAAATAGGATTGCAAGAGCTGCCAATAACCAACAACATGTCGAC 1159
||| || | ||||||||||||||| |||| |||||||| || ||||||| ||| ||||
Sbjct 1132 GATATCGGTGGAAGAGAAAATAGGAATGCAGGAGCTGCCGATCACCAACA-CAT--CGAC 1188
Query 1160 AAAAACGGAGGGTGGTGGTATTCCCAGTGCAGTA---GA--------C-AA-AA--CCTA 1204
|||| |||||||||||||||| |||||| |||| || | || || || |
Sbjct 1189 AAAAGTGGAGGGTGGTGGTATTACCAGTGAAGTAAACGAAGGTGTGACTAACAATACCCA 1248
Query 1205 AGTGTAACC----T----CAATTAA-AGGAAATTTTTGAAGACCAAATTTCCAAGAAGGG 1255
||||||||| | ||||||| || |||||||||||||||||||||||||||| ||
Sbjct 1249 AGTGTAACCCCAATAAAGCAATTAAGAG-AAATTTTTGAAGACCAAATTTCCAAGAAAGG 1307
Query 1256 AAATTTGTTTATCTTTCTTGTTTGTTTTATGTTGTTTACATTTTCAAGTTGTCTGTGTT 1314
|||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1308 AAATTTGTTTGTCTTTCTTGTTTGTTTTATGCTGTTTACATTTTCAAGTTATCTGTGTT 1366
Score = 115 bits (62), Expect = 1e-24
Identities = 78/85 (92%), Gaps = 4/85 (5%)
Strand=Plus/Plus
Query 1 GTATGCTCAAACAAGTAACTCTTAGTCGTTCACGAAACATATC--GTAT-T-TAGAGAGA 56
|||||||||||||||||||||||||||||||||||||||| || ||| | ||||||||
Sbjct 1 GTATGCTCAAACAAGTAACTCTTAGTCGTTCACGAAACATCTCATATATATCTAGAGAGA 60
Query 57 GAAACAAAACAATATATATAGAATC 81
|||||||||||||||||| ||||||
Sbjct 61 GAAACAAAACAATATATAGAGAATC 85
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64658301960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5