BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489743
Length=1665
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08310.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 2296 0.0
> AT4G08310.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Histone chaperone domain CHZ (InterPro:IPR019098); BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G44780.2);
Has 53711 Blast hits to 33687 proteins in
1618 species: Archae - 142; Bacteria - 4400; Metazoa - 24303;
Fungi - 6688; Plants - 2484; Viruses - 449; Other Eukaryotes
- 15245 (source: NCBI BLink). | chr4:5248864-5252150 REVERSE
LENGTH=1709
Length=1709
Score = 2296 bits (1243), Expect = 0.0
Identities = 1552/1692 (92%), Gaps = 58/1692 (3%)
Strand=Plus/Plus
Query 1 TTCTGAGAGAAATGTCT---GGCGACTCGACGACGACTTCGGCTATGGAGATCTCCGGCG 57
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCTGAGAGAAATGTCTGACGGCGACTCGACGACGACTTCGGCTATGGAGATCTCCGGCG 60
Query 58 ACAAGATTGATTCCAAGGACGGTG-AG--GCAACA--A-C---AACAGCTATCGAGTCTC 108
|||||||||||| |||||||||| || ||||| | | ||||| ||||||||| |
Sbjct 61 ACAAGATTGATTTGAAGGACGGTGAAGCAACAACACCACCAAAAACAGATATCGAGTCAC 120
Query 109 AGATTCTCGCGGCTATGCAGTCTCGAGTAACCTACCTCAGAGATAAAGCAGACAACTTCA 168
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 AGATTCTCGCGGCTATGCAGTCCCGAGTAACCTACCTCAGAGATAAAGCAGACAACTTCA 180
Query 169 CCTTTGAGGGTGTTCGGAGGTTGCTAGAGGAGGATCTGAAATTGGAGAAACATGCTTTGG 228
||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 CCTTTGAAGGTGTGCGGAGGTTGCTGGAGGAGGATCTGAAATTGGAGAAACATGCTTTGG 240
Query 229 ATGCGCACAAGAGCTTTGTTAAACAACATTTGCATAAGTGCTTAGAAGGTGCTGAGAATG 288
||| ||| |||||||||||||| ||||||||| | ||||||||| ||||||||||||||
Sbjct 241 ATGTGCATAAGAGCTTTGTTAAGCAACATTTGGTTCAGTGCTTAGCAGGTGCTGAGAATG 300
Query 289 ATGAAACTTCGGAAAATTCTCAAGAAACTGAGAAGAAAGATGCTGTTACTCCTGTGAAAG 348
|||||||||| |||||||||| |||||||||||||||||||| ||| ||||| |||||||
Sbjct 301 ATGAAACTTCAGAAAATTCTCTAGAAACTGAGAAGAAAGATGATGTAACTCCAGTGAAAG 360
Query 349 AAGTAGCAAAGTTATCTAAAGAGCACAAGGA-GAAAAAAGATGTTAAGGAAGATACGACT 407
||| |||| ||||||||||||||||| | || ||||||||||| ||||||||||| ||||
Sbjct 361 AAGCAGCAGAGTTATCTAAAGAGCAC-ACGACGAAAAAAGATGGTAAGGAAGATATGACT 419
Query 408 GGTGATGATGAGAAAACGGAGGATTCTCCTGTGATGGGACTTCTGACAGAAGAAAACACA 467
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGTGATGATGAGAAAACAAAAGATTCTCCTGTGATGGGACTTCTGACAGAAGAAAACACG 479
Query 468 TCCCAATCTGTAGCTGAGCAAACAAAGGATGAGGACAGCAAAGAGGTCCTGCAGAGTGAT 527
||| ||||||| |||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 480 TCCAAATCTGTTGCTGAGCAAACAAAGGATGAGG--A-CAAAGAGGTCCTGCAGAGTGAT 536
Query 528 ATaaaaaaaGCCCTTCGTAAAAGGGCTTCTTATATTAAGGCTAATTCAGAGAAAATTACA 587
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 537 ATAAAGAAAGCCCTTCGTAAAAGGTCTTCTTATATTAAGGCTAATTCAGAGAAAATTACA 596
Query 588 ATGGGCTTACTTCGTCGACTTTTGGAGCAAGATCTTAAATTAGAGAAGTACTCTCTTGAC 647
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 597 ATGGGTTTACTTCGTCGACTTTTGGAGCAAGATCTTAAATTAGAGAAGTATTCTCTTGAC 656
Query 648 CCCTACAAGAAATTCATTAATGGAGAACTAGATGAAATACTACAAGCTCCTGAAGCTACA 707
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 657 CCCTACAAGAAATTCATTAATGGAGAACTAGATGAAATACTACAAGCTCATGAAGCTACA 716
Query 708 AAATCGTCAACTAAGGCTCAGAGGAAAACTGTAACCAAGAAGGTCAAGAGCACACCAGCT 767
|||| ||||||||||||||||||||| | ||| | ||||||||||||||||||||||||
Sbjct 717 CAATCTTCAACTAAGGCTCAGAGGAAACCAGTATCTAAGAAGGTCAAGAGCACACCAGCT 776
Query 768 AAAAATTCAGACAGTGAAGAAATGTCTGATTCAGATGGT---------GAGGACGACAAG 818
||||| ||||||||||||||||||| ||||||||||||| ||||| ||||||
Sbjct 777 AAAAACTCAGACAGTGAAGAAATGTTTGATTCAGATGGTGAAGACGAGGAGGAGGACAAG 836
Query 819 GAAGTCA-CTGTAAAAAAGAAGAAGACGGCTGAGAAAAGAAAATCGTCAAAGTCAGAGGG 877
||||| | |||| |||| ||||||| ||| ||||||||||||| ||||||||||||||
Sbjct 837 GAAGT-AGCTGT--AAAA-AAGAAGATGGCGGAGAAAAGAAAATTATCAAAGTCAGAGGG 892
Query 878 AACCGGAAAGCGGAAACGTGAAAAGGAGAAACTTGCATTTGCAAAGAAGACAAAACAAAC 937
|||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct 893 AACCGGAAAGCGGAAACGTGAAAAGGAGAAACCTGCCTCTGCAAAGAAGACAAAACAAAC 952
Query 938 AGATTCACAGAGCGACAGTGATGCAGGAGAAAAGGCATCATCTTCCGAAAAATCTGTGAA 997
||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| ||
Sbjct 953 AGATTCACAGAGCGACAGTGACGCAGGAGAAAAGGCACCATCTTCAGAAAAATCTGTAAA 1012
Query 998 GAAACAGGAAACTCCAACGACTGGCTACGGGAAGCGTGTTGAGCATCTTAAATCGATCAT 1057
||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1013 GAAACCGGAAACTCCAACGACTGGCTATGGGAAGCGTGTTGAGCACCTTAAATCGATCAT 1072
Query 1058 CAAATCTTGTGGAATGAGTATTTCTCCATCGGTTTACAGGAAAGCCAAGCAGGCTCCTGA 1117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 CAAATCTTGTGGAATGAGTATTTCTCCATCGGTTTACAGGAAAGCCAAGCAGGCTCCTGA 1132
Query 1118 GGAGAAACGCGAGGAAACTCTGATAAAAGAACTTAAGGAGTTACTCGCCAAAGAAGGGTT 1177
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1133 GGAGAAACGCGAGGAAATTCTGATTAAAGAACTTAAGGAGTTACTCGCCAAAGAAGGGTT 1192
Query 1178 GTCTGCAAATCCTTCAGAGAAAGAGATCAAGGAAGTCaaaaaaaGAAAAGAAAGAACAAA 1237
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1193 GTCTGCAAATCCTTCAGAGAAAGAGATCAAGGAAGTCAAGAAAAGAAAAGAAAGAACAAA 1252
Query 1238 GGAGCTCGAGGGTATTGATACAAGCAACATTGTGTCGAGTTCGAGGAGAAGATCCA-CTG 1296
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| | |
Sbjct 1253 GGAGCTTGAGGGTATTGATACAAGCAACATTGTGTCGAGTTCAAGGAGAAGATCCAGC-G 1311
Query 1297 CAAGTTTTGTACCTCCTCCAAAGCCGATAAAAGCAGAAGAAAGCGAGAGCGATGAATCag 1356
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1312 CAAGTTTTGTACCTCCTCCAAAGCCGATAAAAGCAGAAGAAAGCGAGAGCGATGATTCAG 1371
Query 1357 aagattctgagaatgaggaagatgaggatgaagaagtagtagtagaagaagatgaagacg 1416
|||||||||||||||| || |||||||||||||||||||||||||||||||| || || |
Sbjct 1372 AAGATTCTGAGAATGAAGAGGATGAGGATGAAGAAGTAGTAGTAGAAGAAGAAGAGGA-G 1430
Query 1417 aagaagaagaCGAGGTAGGT-GATGAAGATGGCGGAGATGGAAGTCAAAACGAAGGAGAA 1475
||||||||||||| |||| | ||||||||||||||| |||||||||||||||||||||
Sbjct 1431 --GAAGAAGACGAGGGAGGTAG-TGAAGATGGCGGAGAGGGAAGTCAAAACGAAGGAGAA 1487
Query 1476 CCAAACACTGAGGATGGTGGTGAAGA-GAAAAGCGAGTAATTGTAAGATCGTTGGTTGTG 1534
| ||| |||||||||||||||||||| |||| |||| ||||||||||||||||||||||
Sbjct 1488 CTAAAAACTGAGGATGGTGGTGAAGAAGAAA-GCGAATAATTGTAAGATCGTTGGTTGT- 1545
Query 1535 CTTAGCTTTGTCGCAGGAACAATGTAGCTTAGCTTCTCTATGTACTGTTGTAGAGTGGTG 1594
|| | | | | |||||| ||| ||| |||||||||||||||||||||||
Sbjct 1546 -TT-G-T-------A--A----TGTAGCCTAGTTTCACTATGTACTGTTGTAGAGTGGTG 1589
Query 1595 ATATTTTGTAC-TTTTTAAGGTGTTAATCATAATTATGACATTAGGATATGAATTTTAAG 1653
||||||||||| ||||||| ||| |||||||| |||||||||||||||||||||||||||
Sbjct 1590 ATATTTTGTACCTTTTTAATGTGCTAATCATATTTATGACATTAGGATATGAATTTTAAG 1649
Query 1654 ACTTGCATTATA 1665
|||||||||||
Sbjct 1650 GCTTGCATTATA 1661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82278693255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5