BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489746
Length=886
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08330.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1164 0.0
> AT4G08330.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 14 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT2G17705.1);
Has 98 Blast hits to 98 proteins in 13 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:5255120-5256704
REVERSE LENGTH=938
Length=938
Score = 1164 bits (630), Expect = 0.0
Identities = 821/908 (90%), Gaps = 33/908 (4%)
Strand=Plus/Plus
Query 1 GAAGTACTCAAAGTCATCCGAATCGATTGGGACACGTTCTTCTTCATCAACCTAATCCAA 60
|||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 42 GAAGTAGTCAAAGTCACCCGCATCGATTGGGACACGTTCTTCTTCATCAACCTAATCGAA 101
Query 61 AC--TTGTCCTCTCTTCGATCCCAA-ATCGAT-AA--ATTATTACCATTTGAGGCGGTTA 114
| || |||||||||||||||||| |||||| || |||||||||||||| ||| |||
Sbjct 102 TCTTTTATCCTCTCTTCGATCCCAACATCGATAAATTATTATTACCATTTGCGGC-GTT- 159
Query 115 CTT-ATTGATCTCGGCGACGATGGAGAGATCGGCGTCGGTGGGTGTTAACGCCGACCGTT 173
|| | ||||||| ||||| ||||||||||| ||||||||||||||||||| || |||||
Sbjct 160 GTTGAGTGATCTCCGCGACTATGGAGAGATCAGCGTCGGTGGGTGTTAACGACGGCCGTT 219
Query 174 TCGGTGGCAACCAATTCTATT---C-TC---CGTC-T-TTC-TCTTCATCTTCTTCCATG 223
| ||||||||||||||||||| | || | || | ||| ||||| ||||||||||||
Sbjct 220 TTGGTGGCAACCAATTCTATTCGCCATCTTTC-TCTTCTTCTTCTTCTTCTTCTTCCATG 278
Query 224 AGACATGTCAATTACAGTTGTGGATCTTGTGGGTATGAACTAAACCTGAGCTCTACTAAT 283
|||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 279 AGACATGTTAATTACAGTTGTGGATCTTGTGGGTATGAACTAAACCTGAGCTCCACGAAT 338
Query 284 CGAATCACATC-ATCAATCGGATCGAAGTACGGTAAATCCATGAAGAGTGGGATCATTTC 342
||||||||||| | |||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 339 CGAATCACATCGA-CAATCGGATCAAAGTACGGTAAATCCATGAAGAGTGGGATCATATC 397
Query 343 CTTCTTCAACATCGACGAGGGTAGATTCAGTCAGGTCGATGAGTTCCAATGCATGCCTCA 402
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 398 TTTCTTCAACATCGACGAGGGAAGATTCAGTCAGGTCGATGAGTTCCAATGCATGCCTCA 457
Query 403 CTTCTCTAGATACTCTTGGGGTTTATT-CAGACACAGAACTAAGCTTCTCTGTCGTAAAT 461
|||||||||||||||||||||||| || | |||||||||| |||||||| ||||| ||||
Sbjct 458 CTTCTCTAGATACTCTTGGGGTTTGTTTC-GACACAGAACGAAGCTTCTATGTCGCAAAT 516
Query 462 GTAATAATTATATCGGCAATGCTTCTCAAGAGAAGGCTCCTGAGTACGCGCTTGTAACAC 521
|||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||
Sbjct 517 GTAATAATTATATCGGCAATGCTTCTCAGGAGAAGGCTCCTGAGTATGCACTTGTTACAC 576
Query 522 AAAACTCCGATCCGACATCGCCTAGGATTGGTAGTGTTACGAAGTATGATATCAGGATCC 581
||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 577 AAAACTCGGATCCGACATCGCCTAGGATTGGTAGTGTTACGAAGTACGATATCAGAATCC 636
Query 582 GTTCGCTTCAACCCTCTTCTGCGGTCGCTTTGCTGTGAGTGCCTCTTCTACTACTGTGTA 641
| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 637 GCTCGCTTCAACCTTCTTCTGCGGTCGCTTTGCTGTGAGTGCTTCTTCTACTACTGT--A 694
Query 642 TATACCCGCCGAGACTCTACATCTTCTTCAGAGTTTCT-ATTTTAGATCTTCGATGAAGT 700
|||||||||||| | |||| ||||||||| ||||||| |||| ||||||||||||||||
Sbjct 695 TATACCCGCCGATATTCTAAATCTTCTTCGGAGTTTCGGATTT-AGATCTTCGATGAAGT 753
Query 701 GTTTGTTATCAGCTTGGTACTGTTTTGATAAGGTTGGTTTGGGTTTTCAGTTGTATAGTA 760
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 754 GTTTGTTATCGGCTTGGTACTGTTTTGATAAGGTTGGTTTGGCTTTTCAGTTGTATAGTA 813
Query 761 GTAGTAACAATTTGCCTATATGTTTCTTGCTCAAATTCATCATTGGTGTTTACCAATTTT 820
||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 814 GTAACAACAATTTGCCT-TATGTTTCTTGCTCAAATTCATAATTGGTGTTTACCAATTTT 872
Query 821 ATT-TACGAAAAACTGTGTACCATCA-TCCAAATACTGTATTTCAATTGTAATGCAAAAG 878
||| | |||||| |||||||| | || | ||||||||||||||||| ||||||| ||||
Sbjct 873 ATTGT-CGAAAAGCTGTGTACAA-CAATTCAAATACTGTATTTCAAGTGTAATGTAAAAC 930
Query 879 GTTTTATC 886
|||||||
Sbjct 931 ATTTTATC 938
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43251600567
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5