BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489752
Length=862
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08455.1 | Symbols: | BTB/POZ domain-containing protein | c... 1210 0.0
> AT4G08455.1 | Symbols: | BTB/POZ domain-containing protein |
chr4:5375874-5377056 FORWARD LENGTH=883
Length=883
Score = 1210 bits (655), Expect = 0.0
Identities = 803/873 (92%), Gaps = 15/873 (2%)
Strand=Plus/Plus
Query 1 CCGATACCGACACGGCGATGCGATGCATCTCTTGTCGGGAAGAGTACCTCCCTCGCAACG 60
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 CCGATACCGACACGCCGATGCGATGCATCTCTTGTCGAGAAGAGTACCTCCCTCGCAACG 60
Query 61 CTGGAACCTGCAAAGAGTGCTACGTCGAAGCCGGCGAAACTGAGGAAGAACTCAAACGCG 120
| || |||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 CCGGGACCTGCAAGGAATGCTACGTCGAAGCCGGCGAAACTGAAGAAGAACTCAAACGCG 120
Query 121 AGATCGACGACCTCAAAGCTAAAGTTGCTTTCCTTCGCTTATCTTCTTCTCTCGATCATG 180
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 AGATCGATGACCTCAAAGCTAAAGTTGCTTTCCTTCGCTTATCTTCTTCTCTTGATCATG 180
Query 181 GAACCAGCTCAAGCTCTAGATCCTTCACTGATGTTGTTCTCATCGCTTCTCAAGACT-CC 239
|||| || |||| ||||||||||||||||||||||||||||||||| ||| |||| | |
Sbjct 181 GAACTAGTTCAACCTCTAGATCCTTCACTGATGTTGTTCTCATCGCCTCTGAAGA-TAAC 239
Query 240 GCCGGATCTCCTCCTATTCCCGCTCATAAATCCGTTCTGGTGAGTCGTTCACCAGTTTTC 299
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 240 GCCGGATCTCCTCCTATTCCCGCTCATAAATCCGTTCTGGTGAGTCGTTCTCCAGTTTTC 299
Query 300 AAAGCAATGCTTGAGAATGAGATGGAAGAGAGTCTTAGCGGCACTATCAAGATCAGCGAC 359
|||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 300 AAAGCAATGCTTGAGAATGAAATGGAAGAGAGTCTAAGCGGCACGATCAAGATCAGCGAC 359
Query 360 GTATCTTATGATGCTCTTCGGACTTTCGTATATTATCTTTACACAGCTGAAGCATGTCTT 419
||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 360 GTATCTTATGACGCTCTTCGGACTTTCGTATATTATCTCTATACAGCTGAAGCATGTCTT 419
Query 420 GATGAGCAAATGGCATGTGATCTTTTGGTCATGTCAGAGAAATACCAAGTGAAACATCTC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GATGAGCAAATGGCATGTGATCTTTTGGTCATGTCAGAGAAATACCAAGTGAAACATCTC 479
Query 480 AAGAGTTACTGTGAGAGGTTTTTGGTAACCAAACTCAGTCCGGACAATTCGCTTATGACC 539
|||||||| ||||||||||||||||| ||||||||||||||||| || || || ||||||
Sbjct 480 AAGAGTTATTGTGAGAGGTTTTTGGTTACCAAACTCAGTCCGGATAACTCTCTCATGACC 539
Query 540 TATGCCTTTGCCCACCAGCACAACGCAAAACATGTTCTCGATGCTGCTTTGTCGCAGATT 599
||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 540 TATGCCTTTGCACACCAGCACAACGCGAAACATGTTCTCGATGCTGCGTTGTCGCAGATC 599
Query 600 GTAGAAAATATGGAAAAACTTACTAAAAGAGAGGAATACATGGAGCTCGTGGAAAAGGAT 659
|||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 600 GTAGAAAATATGGATAAACTTACTAAAAGAGAGGAATATATGGAGCTCGTGGAGAAGGAT 659
Query 660 CCTCGTCTTATTGTTGAAATCTATGAAGCCTATCTCTCGAAACAGGTTAACACAGCAGCT 719
||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 660 CCTCGTCTTATCGTTGAAATTTATGAAGCCTATCTCTCGAAACAGGTTAATACGGCAGCT 719
Query 720 GGAGGAACTAGCACAAGCAAAACTGGTTGAAATTATTGTTG-TTCTAAAG-TAAACAAGA 777
||||||||||| || ||||||||| ||||||||| || || || | | |||||||||
Sbjct 720 GGAGGAACTAGTACGAGCAAAACTAGTTGAAATT-TTCTTTATTGTCGACCTAAACAAGA 778
Query 778 GGTAAATTCTTGTTTCCCTTCCTTTC-TCTTTTAGGTATAGTATGGTTAGGCTCAGCAGA 836
| || ||||| |||| ||||| |||| | |||||||||||||||||||||| ||| || |
Sbjct 779 G-TAGATTCTGGTTTACCTTCATTTCGT-TTTTAGGTATAGTATGGTTAGGGTCACCAAA 836
Query 837 ACATGG--TTT-TGT--G--AAGCACTAGAAAT 862
|||||| ||| ||| | |||||||||||||
Sbjct 837 ACATGGGGTTTGTGTTTGTGAAGCACTAGAAAT 869
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42045981039
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5