BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489753
Length=1290
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08460.1 | Symbols: | Protein of unknown function (DUF1644)... 1831 0.0
AT1G77770.1 | Symbols: | Protein of unknown function (DUF1644)... 122 6e-27
> AT4G08460.1 | Symbols: | Protein of unknown function (DUF1644)
| chr4:5377123-5380608 REVERSE LENGTH=1282
Length=1282
Score = 1831 bits (991), Expect = 0.0
Identities = 1203/1301 (92%), Gaps = 32/1301 (2%)
Strand=Plus/Plus
Query 1 TATCGCCGCCGCTGAGACCGCCGCTTAAGGCCCGTCTCCT-C-C-A--TCCATAACCAAA 55
|||||||||||||||||||||| ||||||| ||||||||| | | | ||| ||||||||
Sbjct 3 TATCGCCGCCGCTGAGACCGCCACTTAAGG-CCGTCTCCTCCGCAATCTCCGTAACCAAA 61
Query 56 ACCACCCTCATCGCCTGGAAAATCCTGTAGAGTTTGAGCCAATGTTGTCGGCGTGAACCT 115
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 62 ACCACCGGCATCGCCTGGAAAATCCTGTAGAGTTTGAGCCAATGTTGTCGGTGTGAACCT 121
Query 116 CAAAAGTTGTGGGTG-TTTTCCCGCCGATAAAGCTGCTGGCAAGATGGGTTGGGGTTGGG 174
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 CAAAAGTTGTGGGTGTTTTTCCCGCCGATAAAGCTGCTGGCAAGATGGGTTGGGGTTGGG 181
Query 175 TAGGATGGTGTGTAGGGCAAGATGGGGAGAACTAAGGAGCAAGCAACGTTAACTCGGTAT 234
||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 182 TAGAATGGTGTGTAGGGCAAGATGGGGAGAACTAAGGAGCAGGCAACATTAACTCGGTAT 241
Query 235 CCACCCTGTCCTAGGAATCCTGATAAACTCAAAGATATAAACAAAGCACTCCAGGGAAAG 294
|||||||||||||||||||||| |||| |||| |||||||||||||||||||||| |||
Sbjct 242 CCACCCTGTCCTAGGAATCCTGCTAAATTCAATGATATAAACAAAGCACTCCAGGAAAAA 301
Query 295 GGATATGGTAAGGCTCTGAAAAGAAAACCTTGGAAGGGTGTGACATGCCCTGTCTGTCTT 354
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 302 GGATATGGTAAGGCTCTGAAAAGAAAACCTTGGACGGGTGTGACATGCCCTGTCTGTCTT 361
Query 355 GAGGTTCCTCACAACTCGGTCGTCCTCCTTTGCTCATCTTATCACAAAGGATGCCGTCCT 414
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 362 GAGGTTCCTCACAACTCGGTCGTCCTCCTTTGTTCATCTTACCACAAAGGATGCCGTCCG 421
Query 415 TACATGTGTGCCACGGGAAACCGTTTCTCAAATTGTCTAGAGCAGTACAAAAAGGCCTAC 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 422 TACATGTGTGCCACGGGAAACCGTTTCTCAAATTGTCTAGAGCAGTACAAAAAGGCATAT 481
Query 475 GCAAAGGATGAGAAAAGTGACAAACCGCCAGAGCTATTGTGCCCGCTTTGTAGGGGTCAG 534
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 GCCAAGGATGAGAAAAGTGACAAACCGCCAGAGCTATTGTGCCCGCTTTGTAGGGGTCAG 541
Query 535 GTGAAAGGTTGGACTGTTGTTGAAAAGGAACGGAAGTATCTGAATTCTAAGAAAAGGTCA 594
|||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 542 GTGAAAGGCTGGACCGTTGTGGAAAAGGAACGTAAGTATCTGAATTCTAAGAAAAGGTCA 601
Query 595 TGTATGAAAGATAAGTGTTTGTTTTATGGAAGCTATAGACAGCTCAAGAAGCATGTTAAG 654
|| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TGCATGAACGACGAGTGTTTGTTTTATGGAAGCTATAGACAGCTCAAGAAGCATGTTAAG 661
Query 655 GAGGTTCATCCGAGAGCCAAACCAAGAGCCATAGACCCTGTGCTGGAGGCGAAATGGAAG 714
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 662 GAGAACCATCCGAGAGCCAAGCCAAGAGCCATAGACCCTGTGCTGGAGGCGAAATGGAAG 721
Query 715 AAGCTCGAGGTTGAGAGGGAGAGGAGTGATGTAATCAGCACAGTCATGGCGTCAACACCC 774
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 722 AAGCTTGAGGTTGAGAGGGAGAGGAGTGATGTAATCAGCACAGTCATGTCGTCAACACCT 781
Query 775 GGGGCTATGGTATTTGGAGACTATGTGATTGAGCCATACAATAATGCTTATGGTCATCAA 834
|||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 782 GGGGCTATGGTATTTGGAGACTATGTGATTGAGCCATACAATG--G-TTATGATCATCAA 838
Query 835 GATGACAGTGATGAAGATGACAGTGA---GTCGGATGATGAAATGGAAGGTGGGTTATTC 891
||||||||||| || | ||||||| ||||||||| ||||||||||||||| |||||
Sbjct 839 GATGACAGTGACGAT--T-ACAGTGATTCGTCGGATGACGAAATGGAAGGTGGGGTATTC 895
Query 892 GAGCTTGGATCATTCGACATGGGCCGTCTTCAACCGCGTTCGGCTGCCATCTCAAGCCGG 951
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GAGCTTGGAGCATTCGACCTGGGCCGTCTTCAACCGCGTTCGGCTGCCATCTCAAGCCGG 955
Query 952 GGAATTCGCAGTATGATCATAAGGAACCGGTGGGTTCGGAGCAGAGGTGTGAGCAGAAGG 1011
||||||||| |||||||||||||||||||||||| ||| |||||||||| ||||||||||
Sbjct 956 GGAATTCGCGGTATGATCATAAGGAACCGGTGGGCTCGAAGCAGAGGTGCGAGCAGAAGG 1015
Query 1012 CGGCAAACACAAGATTGATGATTGATGATTGGAAGCTTGGAAAGCGGATGATTCTACACC 1071
|| |||||| |||||||||||||| || | |||||||| || ||||||||||||||
Sbjct 1016 CGACAAACATAAGATTGATGATTG--GA----A-GCTTGGAAGGCAGATGATTCTACACC 1068
Query 1072 GTCTGACCAAGTTAACCTCCGAGCTCTATATAGT-GGCGGAGGGGAAGGCGAGTGGGAAC 1130
|||||||||||||||||||||| ||||||||| | ||| |||||||||||||||||||||
Sbjct 1069 GTCTGACCAAGTTAACCTCCGAACTCTATATA-TCGGCAGAGGGGAAGGCGAGTGGGAAC 1127
Query 1131 AAAACAAAGGATTGTTGATTAAAGTTTTTAGTTAGCGATTTAGGGTTTCAGGTTCGGAAG 1190
|||||| ||| |||||||||||||||||||||||||| |||||| ||||||||| |||||
Sbjct 1128 AAAACAGAGGGTTGTTGATTAAAGTTTTTAGTTAGCGGTTTAGGTTTTCAGGTTTGGAAG 1187
Query 1191 ATTTGAGTTGGGTGTTCC-CTCGACCTTTGATTTAAAGAGTTCAAACGTTTCATATGCTT 1249
||||||| || |||||| ||| ||||||||||||||| ||| ||||||||||| ||||
Sbjct 1188 ATTTGAGCTGTTTGTTCCTCTCTACCTTTGATTTAAAGTGTTAAAACGTTTCATTTGCT- 1246
Query 1250 TGGATACTTTTATTTCATTTGAAAATATCTCCATTGGCTTC 1290
| ||||||||| |||||||||||||||||||||||||
Sbjct 1247 ---A--CTTTTATTTGATTTGAAAATATCTCCATTGGCTTC 1282
> AT1G77770.1 | Symbols: | Protein of unknown function (DUF1644)
| chr1:29246074-29248022 REVERSE LENGTH=1216
Length=1216
Score = 122 bits (66), Expect = 6e-27
Identities = 334/461 (72%), Gaps = 28/461 (6%)
Strand=Plus/Plus
Query 360 TCCTCACAACT-CGG-TCGTCCTCCTTTGCTCATCTTATCACAAAGGATGCCGTCCTTAC 417
||| ||||| | ||| || | ||||| || || |||||||||||||||||||||||||||
Sbjct 223 TCCACACAA-TGCGGTTC-TTCTCCTGTGTTCGTCTTATCACAAAGGATGCCGTCCTTAC 280
Query 418 ATGTGTGCCACGGGAAACCGTTTCT-CAAATTGTCTAGAGCAGTACAA-AAAGGCCTACG 475
|||||||| || | | |||||| | | || || || || || |||| ||| ||||||
Sbjct 281 ATGTGTGCTACAAGCAGCCGTTT-TGCCAACTGCCTTGATCAATACAGGAAAT-CCTACG 338
Query 476 CAAAGGATGAGAAAAGTGACAAACCGCCAGAGCTATTGTGCCCGCTTTGTAGGGGTCAGG 535
|| || | | | ||||| || | ||||| ||||| || || ||||| ||||| |
Sbjct 339 GTAACGAAAACTCA-G-GACAA-CC-C--GAGCTTTTGTGTCCACTGTGTAGAGGTCAAG 392
Query 536 TGAAAGGTTGGACTGTTGTTGAAA-AGGAACGGAAGTATCTGAATTCTAAGAAAAGGTCA 594
||||||| ||||||||||| |||| | | |||| | || | || || |||| |||| |
Sbjct 393 TGAAAGGCTGGACTGTTGT-GAAAGATGCTCGGATGCATTTTAACTCCAAGAGAAGGACT 451
Query 595 TGTATGAAAGATAAGTGTTTGTTTT-ATGGAAGCTATA-GACAGCTCAAGAAGCATGTTA 652
|||||| | ||||| |||| |||| | |||| | | || |||||||||| || | |
Sbjct 452 TGTATGCAGGATAACTGTTCCTTTTTA-GGAAATT-TCCGAAAGCTCAAGAAACACATGA 509
Query 653 AGGAGGTTCATCCGAGA-GCCAAACCAAGAGCCATAGACCCTG-TGCTGGAGGCGAAATG 710
|||| || || | | || ||||||||||| || || | | | || | |||||
Sbjct 510 AGGAAAAACACCC-ACATGCTTGCCCAAGAGCCATTGATCCAGCTT-TAGAAACTAAATG 567
Query 711 GAAGAAGCTCGAG-GTTGAGAGGGAGAGGAGTGATGTAATCAGCAC-AGTCATGGCGTCA 768
||||| ||| ||| | || || || || || || || || ||||| | | ||| | ||
Sbjct 568 GAAGAGGCTTGAGAGG-GAAAGAGACAGAAGAGACGTGATAAGCACGA-TAATGTCATCG 625
Query 769 ACACCCGGGGCTATGGTATTTGGAGACTATGTGATTGAGCC 809
||||| || ||| | || || ||||| |||||||| |||||
Sbjct 626 ACACCAGGTGCTGTTGTGTTGGGAGATTATGTGATAGAGCC 666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63453488880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5