BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg489760

Length=320
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G08555.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   401    2e-111


> AT4G08555.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured 
cell; Has 4 Blast hits to 4 proteins in 2 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; 
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:5448133-5448523 
FORWARD LENGTH=391
Length=391

 Score =  401 bits (217),  Expect = 2e-111
 Identities = 298/334 (89%), Gaps = 17/334 (5%)
 Strand=Plus/Plus

Query  1    CTCATTAAGTTTCAGACCAATCTTGATTCG--GATTTTATTTTTGGAAGATGTACGGTGT  58
            |||| ||||||| |||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct  10   CTCACTAAGTTTTAGACCAATCTTGATTCGTAGATTTTATTTTTGGAAGATGTACGGTGT  69

Query  59   TGGTGGATCGAGCACAACGGGTTTCGCAGAGGCTTACGCGATGAGGAAGATTTATAAGGA  118
             ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||
Sbjct  70   CGGTGGATCGAGCACAGCGGGTTTCGCAGAAGCTTACGCGATGAGGAAGATTTATAAAGA  129

Query  119  AAAGATGAAGATGAAGCTTGCAGACGTAAAAGTAGAGGAAGAGAAA-AACAATGTTGAAG  177
            |||||||||||||||||||||||| | ||||||||||||||| ||| || ||||||| ||
Sbjct  130  AAAGATGAAGATGAAGCTTGCAGAGGCAAAAGTAGAGGAAGAAAAAGAA-AATGTTGGAG  188

Query  178  AG-AAGAGTAAAATCTGGAAAACGAAGAAACCGAAGAAGACCCTCCAGATTAATCCGAGG  236
             | ||||||||||||||||||||||||||| | |||||||||||||| | |||||| |||
Sbjct  189  -GTAAGAGTAAAATCTGGAAAACGAAGAAATCTAAGAAGACCCTCCATACTAATCCAAGG  247

Query  237  GTTTCCTCTGCAGATATTTAAACACCTAT--GTA---G-ttatgtatttatttatttt--  288
            |||||||||||||||||||||||| ||||  |||   | |||||||||| ||| ||||  
Sbjct  248  GTTTCCTCTGCAGATATTTAAACATCTATATGTATATGGTTATGTATTTTTTTTTTTTCT  307

Query  289  -aacttttttatgatgggttcattttgtt-tttt  320
             |||||||| ||||| ||||||||||||| ||||
Sbjct  308  TAACTTTTT-ATGATTGGTTCATTTTGTTCTTTT  340



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14879253704


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5