BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489762
Length=1524
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08590.1 | Symbols: ORL1, VIM6, ORTHL | ORTHRUS-like | chr4:... 1790 0.0
AT1G57820.1 | Symbols: VIM1, ORTH2 | Zinc finger (C3HC4-type RI... 767 0.0
AT1G57800.1 | Symbols: VIM5, ORTH3 | zinc finger (C3HC4-type RI... 512 4e-144
AT5G39550.1 | Symbols: VIM3, ORTH1 | Zinc finger (C3HC4-type RI... 508 5e-143
AT1G66050.1 | Symbols: VIM2, ORTH5 | Zinc finger (C3HC4-type RI... 475 5e-133
AT1G66040.1 | Symbols: VIM4, ORTH4 | Zinc finger (C3HC4-type RI... 470 2e-131
AT3G49080.1 | Symbols: | Ribosomal protein S5 domain 2-like su... 139 7e-32
> AT4G08590.1 | Symbols: ORL1, VIM6, ORTHL | ORTHRUS-like | chr4:5463885-5466671
REVERSE LENGTH=1634
Length=1634
Score = 1790 bits (969), Expect = 0.0
Identities = 1372/1555 (88%), Gaps = 74/1555 (5%)
Strand=Plus/Plus
Query 1 TCGAAATGGCGCGTGACAACCAGCTTCCAGGCGACGGCGACGGTGTATCCACGCCGGAGG 60
|||||||| |||||| |||||||||| | | | ||||| ||||||| ||| ||||||
Sbjct 32 TCGAAATGACGCGTGTCAACCAGCTT-C---C-A-TGCGACTGTGTATCTACGGCGGAGG 85
Query 61 AATCCCTCACTTACC-GCACGTGCGA-TACCCCTTCGCACGTGACCTGCGTTTCATCTCC 118
|||| ||||||| || |||||||| | ||||||| |||||||||| | | |||| | |
Sbjct 86 AATCTCTCACTT-CCGGCACGTGC-ATTACCCCTACGCACGTGACTTCCCTTTC--GT-C 140
Query 119 TCCTCTTGATCGCTCCGGCGATGTTGATCCTCTTCCTGTTTCCGGCATCGGGGGACACGA 178
||||||||||||||||||||||||||||||||||||||||| | | | ||||
Sbjct 141 TCCTCTTGATCGCTCCGGCGATGTTGATCCTCTTCCTGTTT----C--C----G--ACGA 188
Query 179 ATCTGGTGGCTCAAAGGCCGATGAGTCTATGATTGACACAGATGAGACTAAAAAGAGGAA 238
|||||||||||| ||||||||||| ||||||| |||| ||||||||||||||||||||||
Sbjct 189 ATCTGGTGGCTCGAAGGCCGATGAATCTATGACTGACGCAGATGAGACTAAAAAGAGGAA 248
Query 239 ACGGTTACTCA---GTG---GT------GA-G-G---AA-AAGAGTGACGGAGAAATCAC 280
|||| |||||| ||| || || | | || |||||||||||||||||| |
Sbjct 249 ACGGATACTCAGTGGTGATTGTGAAGCCGATGAGAATAATAAGAGTGACGGAGAAATCGC 308
Query 281 GAGTCTCGATGACCGTGTTGATGTC-TTCGCTGCGATTTGTGAAGACTTGAATTGTTCTT 339
||||||| ||||| ||||||||| | || |||||||||||||||||||||||||||||
Sbjct 309 GAGTCTCAATGACGGTGTTGATG-CGTTTACTGCGATTTGTGAAGACTTGAATTGTTCTC 367
Query 340 TGTGTAATCAATTGCCTGATAGACCCGTTACGACACAATGTGGGCACAACTTCTGCTTAA 399
|||||||||||||||||||||| ||||| |||| | |||||| || ||||| ||||| |
Sbjct 368 TGTGTAATCAATTGCCTGATAGGCCCGTCACGATATTATGTGGACATAACTTTTGCTTGA 427
Query 400 AATGTTTTGAGAAGTGGATTGATCGAGGGAATGAAACGTGTGCAAAATGTCGTAGCCCAA 459
|||||||||| ||||||||||||| ||||||| ||| ||||| | |||||||||| |||
Sbjct 428 AATGTTTTGACAAGTGGATTGATCAAGGGAATCAAATTTGTGCTACATGTCGTAGCACAA 487
Query 460 TTCCCGATATAATGGCAGGCAATCCTCGTGTTAACTCGTCCCTCGTGCCTGTTATCCGTT 519
|||| || | |||||| | ||||||||||||||||||||| || ||| ||||||||||||
Sbjct 488 TTCCTGACAAAATGGCTGCCAATCCTCGTGTTAACTCGTCTCTTGTGTCTGTTATCCGTT 547
Query 520 ATGTAAAAGTTGCTAAAGGTGCTGGTGCTGGAAATGCAAAttttttttCTTTTACAAGCA 579
||||||||||||||||| |||||||| ||| | ||||||||||||| ||||||||||||
Sbjct 548 ATGTAAAAGTTGCTAAAACTGCTGGTGTTGGTACTGCAAATTTTTTTCCTTTTACAAGCA 607
Query 580 ACCAAGGTGGTCCAGAGAATGCTTTTAGAACCAAGCGCGC-AAAAACTGGGAGGGCGAAT 638
|||||| || ||||||||||| ||||||||||||||||| |||| | |||| || ||||
Sbjct 608 ACCAAGACGGCCCAGAGAATGCCTTTAGAACCAAGCGCGCTAAAATCGGGGA-GGAGAAT 666
Query 639 GCTGCATGTGGAAGGATATATGTTACTGTACCATTTGATCACTTTGGTCCTATACCAGCT 698
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 667 GCTGC------AAGGATATATGTTACCGTACCATTTGATCACTTTGGTCCTATACCAGCT 720
Query 699 GAAAATGATCCTGTCAGGAACCAAGGTGTTTTAGTTGGAGAATCCTGGAAGGATCGAGTC 758
||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 721 GAACATGATCCTGTCAGGAACCAAGGTGTTTTAGTTGGAGAATCCTGGGAGAATCGAGTA 780
Query 759 GAATGTCGGCAGTGGGGGGCTCACTTCG-CACATGTTTCTTGCATTGCTGGACAATCAGA 817
|| |||||||||||||||| |||||| | |||||||||||||||||||||||||| |||
Sbjct 781 GAGTGTCGGCAGTGGGGGGTTCACTT-GCCACATGTTTCTTGCATTGCTGGACAAGAAGA 839
Query 818 CTACGGAGCTCAATCTGTAGCAATCTCTGGAGGTTATAAGGATGACGTGGATCATGGAGA 877
||| |||||||| ||||||| ||| |||||||||||||||||||||| ||||||||||||
Sbjct 840 CTATGGAGCTCAGTCTGTAGTAATATCTGGAGGTTATAAGGATGACGAGGATCATGGAGA 899
Query 878 ATGGTTTCTATTCACAGGAAGG-G--GAAGGAGAAATTTCAATAACGAGGATCAGGAGTT 934
||||||||||| |||||||||| | || ||||| ||||| ||||||||||||||||||
Sbjct 900 ATGGTTTCTATACACAGGAAGGAGTAGAGGGAGACATTTCGCTAACGAGGATCAGGAGTT 959
Query 935 TGAAGAATTGAATGAAGCTTTAAGAGTTAGTTGCGAAATGGGGTATCCAGTTCGAGTTGT 994
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TGAAGACTTGAATGAAGCTTTAAGAGTTAGTTGCGAAATGGGGTATCCAGTTCGAGTTGT 1019
Query 995 CAGGTCTTACAAGGAGAAGCATTCTGCATATGCCCCTGAGGAAGGAGTGAGATATGATGG 1054
||||||||||||||| | | ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1020 CAGGTCTTACAAGGATAGGTATTCTGCATATGCCCCTAAGGAAGGAGTGAGATATGATGG 1079
Query 1055 TGTCTACAGGATCGAGAAATGCTGGCGAAAAGCTAGATTCCAGGATTCCTGTAAGGTCTG 1114
||| ||||||||||||||||||||||||||||||||||||| |||||| | |||||||||
Sbjct 1080 TGTATACAGGATCGAGAAATGCTGGCGAAAAGCTAGATTCCCGGATTCATTTAAGGTCTG 1139
Query 1115 TCGTTACCTGTTTGTGAGATGTGACAATGAGCCAGCTCCATGGAACAGTGATGAGAATGG 1174
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1140 TCGTTACCTGTTTGTAAGATGTGACAATGAGCCAGCTCCATGGAACAGTGATGAGAGTGG 1199
Query 1175 AGATCGTCCAAGACCTTTGCCTAATATTCCAGAGCTTGAAACTGCCACAGACCTGTTTGA 1234
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1200 AGATCGTCCAAGACCTTTGCCTAATATTCCAGAGCTTGAAACGGCCTCAGACCTGTTTGA 1259
Query 1235 GAGAAAGGAAAGTCCATCTTGGGATTTTGATGAAGCTGAGGGCCGTTGGAGATGGATGAA 1294
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1260 GAGAAAGGAAAGTCCATCATGGGATTTTGATGAAGCCGAGGGCCGTTGGAGATGGATGAA 1319
Query 1295 GCCTCCACCTGCTAATCATGAGCAGAGGAAGAGAATGAGGATCGCTATGACATGTCTTCT 1354
|||||||||||| ||||||||||||||| ||||||||| ||| |||||||||||||||||
Sbjct 1320 GCCTCCACCTGCAAATCATGAGCAGAGGGAGAGAATGAAGATGGCTATGACATGTCTTCT 1379
Query 1355 CCTTTTTGTCATGATCATTTTTGTTGGTTCATCATCTATCTTATACCGGGT-TTAGAAGA 1413
|||||||||| | |||||| | ||||||||||||||||||||||| | | | ||||||||
Sbjct 1380 CCTTTTTGTCCTTATCATTCTCGTTGGTTCATCATCTATCTTATATCAG-TATTAGAAGA 1438
Query 1414 ATCACCGGCAAATAACTTGTTCTTTTGGTTTGATGATCCCTTAGTTATCTT-CTTGT-AC 1471
||||||| ||||||||||||| |||||||| ||||||||| |||| ||||| ||
Sbjct 1439 ATCACCGACAAATAACTTGTT-----GGTTTGAT---CCCTTAGTTGTCTTTCTTGTTAC 1490
Query 1472 CAAAACAGTCTTCTCTAGTTCTCTCACTACTC--GTCTTGGATACTTGAGGTTCT 1524
||| ||||||| ||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1491 CAA--CAGTCTTTTCTAGTTCTCTCACTACTCAAGTCTTGGAAACTTGAGGTTCT 1543
> AT1G57820.1 | Symbols: VIM1, ORTH2 | Zinc finger (C3HC4-type
RING finger) family protein | chr1:21414170-21417946 REVERSE
LENGTH=2154
Length=2154
Score = 767 bits (415), Expect = 0.0
Identities = 838/1032 (81%), Gaps = 70/1032 (7%)
Strand=Plus/Plus
Query 325 ACTTGAAT-TGTTCTTTGTGTAAT-CAATTGCCTGATAGACCCGTTACGACACAATGTGG 382
||||| || |||||||| ||| || || |||||||| ||||| || |||| || ||||||
Sbjct 472 ACTTG-ATGTGTTCTTTCTGT-ATGCAGTTGCCTGAGAGACCTGTGACGAAACCATGTGG 529
Query 383 GCACAACTTC-TGCTTAAAATGTTTTGAGAAGTGGATTGATCGAGGGAATGA-AACGTGT 440
||||||| | |||||||||||||||||||| ||||| | | |||||| || ||| |||
Sbjct 530 GCACAAC-GCTTGCTTAAAATGTTTTGAGAAATGGATGGGGC-AGGGAAAGAGAACTTGT 587
Query 441 GCAAAATGTCGTAGCCCAATTCCCGATATAATGGC-AGGCAATCCTCGTGTTAACTCGTC 499
| ||||| || ||| |||||| || | |||||| | | ||||| ||| | ||||||||
Sbjct 588 GGTAAATGCCGCAGCATAATTCCTGAAAAAATGGCTAAG-AATCCCCGTATCAACTCGTC 646
Query 500 CCTCG-TGCCTGTTATCCG-TTATGTAAAAGT-TGCTAAAGGTGCTGGTGCTGGA--AAT 554
|| | || ||| || || ||| | |||||| | ||||| |||||| ||| || | |
Sbjct 647 TCTTGTTG-CTGCCATTCGATTA-GCAAAAGTCT-CTAAAAGTGCTGCTGC--GACCACT 701
Query 555 GCAAAttttttttC-TTTTA-CAAGCAACCAAGGTGGTCCAGAGAATGCTTTTAGAACCA 612
|||| | |||| ||| | | |||||||||| | ||||| || || |||| ||||
Sbjct 702 TCAAA-GGTCTTTCATTTCATC-AGCAACCAAGACCGACCAGATAAAGCATTTACAACCG 759
Query 613 AGCGCGC--A-AAAACTGGGAGGGCGAATGCTGCAT-GTGGAAGGATATATGTTACTGTA 668
|||| || | |||||||| | ||| || ||||| | |||||| ||| |||||||| ||
Sbjct 760 AGCGTGCAAAGAAAACTGGCAAGGCAAACGCTGC-TAGTGGAAAGATTTATGTTACAATA 818
Query 669 CCATTTGATCACTTTGGTCCTATACCAGCTGAAAATGATCCTGTCAGGAACCAAGGTGTT 728
||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||| ||
Sbjct 819 CCACCAGATCATTTTGGTCCTATTCCAGCTGAAAATGACCCTGTCAGGAACCAAGGTCTT 878
Query 729 TTAGTTGGAGAATCCTGGAAGGATC-GAGTCGAATGTCGGCAGTGGGGGGCTCACTTCGC 787
|| ||||||||||||||| |||| | || |||| ||| |||||||||| ||||| ||| |
Sbjct 879 TTGGTTGGAGAATCCTGGGAGGA-CAGACTCGAGTGTAGGCAGTGGGGTGCTCATTTCCC 937
Query 788 ACATGTTTCTTGCATTGCTGGACAATCAGAC-TACGGAGCTCAATCTGTAGCAATCTCTG 846
||||||| || |||||||||||||||| || || || ||||||||||||||| ||||||
Sbjct 938 ACATGTTGCTGGCATTGCTGGACAATC-TACTTATGGCGCTCAATCTGTAGCACTCTCTG 996
Query 847 GAGGTTATAAGGATGACGTGGATCATGGAGAATGGTTTCTATTCACAGGAAG-GGGAAGG 905
|||||||||||||||| | ||||||||||||||||||||||| ||||||||| ||| ||
Sbjct 997 GAGGTTATAAGGATGATGAGGATCATGGAGAATGGTTTCTATACACAGGAAGTGGG--GG 1054
Query 906 -AGAAATTTCAAT---AAC--GAGGA-T--C-A-G-G-AG---TTTGA--AGAA--TT-- 943
||| || ||| | ||| |||| | | | | | || ||||| | || ||
Sbjct 1055 TAGAGATCTCAGTGGCAACAAAAGGACTAACAAGGAGCAGTCTTTTGACCAAAAGTTTGA 1114
Query 944 ---G---AATGAAGCTTTAAGAGTTAGTTGCGAAA-TGGGGTATCCAGTTCGAGTTGTCA 996
| |||| ||| |||| | | || ||| ||| |||||||||| |||||||||||||
Sbjct 1115 GAAGTCTAATGCAGCATTAAAACTCAGCTGC-AAATTGGGGTATCCTGTTCGAGTTGTCA 1173
Query 997 GGTCTTACAAGGAGAAGCATTCTGCATATGCCCCTGAGGAAGGAGTGAGATATGATGGTG 1056
||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1174 GGTCTCACAAGGAGAAGCGTTCTGCATACGCCCCTGAGGAAGGAGTGAGATATGATGGGG 1233
Query 1057 TCTACAGGATCGAGAAATGCTGGCGAAAAGCTAGATTCCAGGATTCCTGTAAGGTCTGTC 1116
| |||||||| ||||| |||||||| |||| | || | |||| ||| | |||||||||||
Sbjct 1234 TTTACAGGATTGAGAAGTGCTGGCGCAAAGTTGGAGTACAGGGTTCTTTTAAGGTCTGTC 1293
Query 1117 GTTACCTGTTTGTGAGATGTGACAATGAGCCAGCTCCATGGAACAGTGATGAGAATGGAG 1176
|||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1294 GTTACCTGTTCGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGAATGGAG 1353
Query 1177 ATCGTCCAAGACCTTTGCCTAATATTCCAGAGCTTGAA-ACTG-CCACAGACCTGTTTGA 1234
|||||||||||||| | |||||||||||||||||| || | || |||| |||||||||||
Sbjct 1354 ATCGTCCAAGACCTATCCCTAATATTCCAGAGCTT-AATA-TGGCCACCGACCTGTTTGA 1411
Query 1235 GAGAAAGGAAAGTCCATCTTGGGATTTTGATGAAGCTGAGGGCCGTTGGAGATGGATGAA 1294
|||||| |||| |||||| |||||||||||||||| |||||| |||||| |||||||||
Sbjct 1412 GAGAAAAGAAACTCCATCATGGGATTTTGATGAAGGTGAGGGTTGTTGGAAATGGATGAA 1471
Query 1295 GCCTCCACCTGC 1306
||| ||||||||
Sbjct 1472 GCCGCCACCTGC 1483
> AT1G57800.1 | Symbols: VIM5, ORTH3 | zinc finger (C3HC4-type
RING finger) family protein | chr1:21408623-21412283 REVERSE
LENGTH=2107
Length=2107
Score = 512 bits (277), Expect = 4e-144
Identities = 614/765 (80%), Gaps = 69/765 (9%)
Strand=Plus/Plus
Query 589 GTCCAGAGAATGCTTTTAGAACCAAGCGCGC--A-AAAACTGGGAGGGCGAATGC-TGCA 644
||||||| || || |||| ||| ||||||| | ||||| |||| || ||||| | ||
Sbjct 728 GTCCAGATAAAGCATTTACAACTGAGCGCGCTAAGAAAACAGGGAATGCAAATGCTTCCA 787
Query 645 TGTGG-AAGGATATATGTTACTGTACCAT-TTGATCACTTTGGTCCTATACCAGCTGAAA 702
|||| || ||| | |||||| | || | ||||| ||||||||||||||||||||||
Sbjct 788 -GTGGCAA-GATTTTTGTTACAAT-CCCTCGAGATCATTTTGGTCCTATACCAGCTGAAA 844
Query 703 ATGATCCTGTCAGGAACCAAGGTGTTTTAGTTGGAGAATCCTGGAAGGATCGAGTCGAAT 762
|||||||||| |||||||||||| |||| ||||||||||||||||||| ||| | | |
Sbjct 845 ATGATCCTGTTAGGAACCAAGGTCTTTTGGTTGGAGAATCCTGGAAGGGCCGACTTGCTT 904
Query 763 GTCGGCAGTGGGGGGCTCACTTCGCACATGTTTCTTGCATTGCTGGACAATCAGACT-AC 821
||||||||||||||||||||||| |||||||||| |||||||||||||| | || | |
Sbjct 905 GTCGGCAGTGGGGGGCTCACTTCCCACATGTTTCCGGCATTGCTGGACAAGC-GAGTTAT 963
Query 822 GGAGCTCAATCTGTAGCAATCTCTGGAGGTTATAAGGATGACGTGGATCATGGAGAATGG 881
|||||||||||||| | || ||||||||||| | ||||| | ||||||||||||||||
Sbjct 964 GGAGCTCAATCTGTTGTGCTCGCTGGAGGTTATGATGATGATGAGGATCATGGAGAATGG 1023
Query 882 TTTCTATTCACAGGAAG-GGGAAGGA-GAAATT-TCAAT---AACGA--GGA-T--CA-G 929
||||||| ||||||||| ||| ||| ||| || |||| ||| | ||| | || |
Sbjct 1024 TTTCTATACACAGGAAGTGGG--GGAAGAA-TTCTCAAAGGCAACAAAAGGACTAACACG 1080
Query 930 G---A-G-TTT-GA--A-G-A-----A---TTGAATGAAGCTTTAAGAGTTAGTTGCGAA 971
| | | ||| || | | | | || ||||||||||||||| ||||||| ||
Sbjct 1081 GTTCAAGCTTTTGATCAAGTATTTCTAAACTTTAATGAAGCTTTAAGACTTAGTTGT-AA 1139
Query 972 A-TGGGGTATCCAGTTCGAGTTGTCAGGTCTTAC-AAGGAGAAGCATTCTGCATATGCCC 1029
| | |||||||| |||||||||||||||||| || ||||| |||| |||| |||| ||||
Sbjct 1140 ACTAGGGTATCCTGTTCGAGTTGTCAGGTCT-ACCAAGGACAAGCGTTCTCCATACGCCC 1198
Query 1030 CTGA-GGAAGGAGTG--A-GATATGATGGTGTCTACAGGATCGAGAAATGCTGGCGAAAA 1085
|| | ||| ||| | | | ||||||||||| ||| |||| |||||||||||| | | |
Sbjct 1199 CTCAAGGA-GGACTACTAAGGTATGATGGTGTTTACCGGATAGAGAAATGCTGGAGGATA 1257
Query 1086 GCTAGATTCCAGGATTCCTGTAAGGTCTGTCGTTACCTGTTTGTGAGATGTGACAATGAG 1145
| | || | ||| || || | | || || ||||||||| |||||||||||||||
Sbjct 1258 GTTGGAATACAG-AT----GT--GC-C-GT--TT-CCTGTTTGTTAGATGTGACAATGAG 1305
Query 1146 CCAGCTCCATGGAACAGTGATGAGAATGGAGATCGTCCAAGACCTTTGCCTAATATTCCA 1205
||||||||||||| |||||||||| |||||||||| |||||||||||||||||| ||||
Sbjct 1306 CCAGCTCCATGGACCAGTGATGAGCATGGAGATCGCCCAAGACCTTTGCCTAATGTTCCT 1365
Query 1206 GAGCTTGAA-ACTG-CCACAGACCTGTTTGAGAGAAAGGAAAGTCCATCTTGGGATTTTG 1263
|||||| || | || |||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1366 GAGCTT-AATA-TGGCCACAGACCTGTTTGAGAGAAAAGAAAGTCCATCATGGGATTTTG 1423
Query 1264 ATGAAGCTGAGGGCCGTTGGAGATGGATGAAGCCTCCACCTGCTA 1308
|||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct 1424 ATGAAGGTGAGGATCGTTGGAGATGGATGAAGCCACCACCTGCTA 1468
> AT5G39550.1 | Symbols: VIM3, ORTH1 | Zinc finger (C3HC4-type
RING finger) family protein | chr5:15837210-15840638 REVERSE
LENGTH=2187
Length=2187
Score = 508 bits (275), Expect = 5e-143
Identities = 789/1028 (77%), Gaps = 72/1028 (7%)
Strand=Plus/Plus
Query 332 TTGTTCT-TTGTGTAATCAATTGCCTGATAGACCCGTTACGACACAATGTGGGCACAACT 390
||||||| || || | ||||||||| || ||||| | ||||||| ||||||||||| |
Sbjct 519 TTGTTCTATT-TGCATTCAATTGCCAGAAAGACCTATCACGACACCGTGTGGGCACAATT 577
Query 391 TCTGCTTAAAATGTTTTGAGAAGT-GG-A-TTGATCGAGGGAATG-AAACGTGTGCAAAA 446
|||| || |||||||| ||||| | || | | | || |||||| | ||| ||| | |
Sbjct 578 TCTGTTTGAAATGTTTCGAGAAATGGGCAGTAGGTCAAGGGAA-GCTAACTTGTATGATA 636
Query 447 TGTCGTAGCCCAATTCCCGATATA-ATGGCAGGCAATCCTCGTGTTAAC-TCGTCCCTCG 504
|| || ||| |||| |||| | | ||||| |||||||| | ||| | | | || |
Sbjct 637 TGCCGAAGCAAAATT-CCGAGACATGTGGCAAAAAATCCTCGCATCAACTTAG-CTCTAG 694
Query 505 TGCCTGTTATCCG-TTATGTAAAAGTTGCTAAAGGTGCTGGTGCTGG-AAATGCA---AA 559
| ||| ||| || ||| | ||| ||| | ||| || ||| || || || |||| ||
Sbjct 695 TTTCTGCTATTCGTTTA-GCAAATGTTACCAAATGTTCTGTTG-AGGCAACTGCAGCCAA 752
Query 560 ttttttttC-TTTTA-CAAGCAACCAAGGTGGTCCAGAGAATGCTTTTAGAACCAAGC-- 615
|| || | ||| | ||||||||| |||| ||||| || |||| ||| |||
Sbjct 753 -GGTTCATCATATTATC-CGCAACCAAGACCGTCCTGAGAAAGCATTTACTACCGAGCGG 810
Query 616 GC-GCAAAAACTGGGAGGGCGAATGCTGCAT-GTGG-AAGGATATATGTTACTGTACCAT 672
|| | ||||||||||| || |||||||| | | || || | | | ||| || |||| |
Sbjct 811 GCAGTAAAAACTGGGAAAGCTAATGCTGC-TAGCGGTAA-GTTTTTTGTGACAATACC-T 867
Query 673 -TTGATCACTTTGGTCCTATACCAGCTGAAAATGATCCTGTC-AGGAACCAAGGTGTTTT 730
|||||| |||||||| ||||||||||| |||||| | | || || |||||||||||
Sbjct 868 CGTGATCATTTTGGTCCCATACCAGCTGAGAATGAT-GTCACTAGAAAGCAAGGTGTTTT 926
Query 731 AGTTGGAGAATCCTGGAAGGATCGAGTC--GAATGTCGGCAGTGGGGGGCTCACTTCGCA 788
||||||||||| ||| |||| | || | || ||| |||||||||| ||||| ||| |
Sbjct 927 GGTTGGAGAATCTTGGGAGGA-C-AGGCAAGAGTGTAGGCAGTGGGGAGCTCATTTCCCG 984
Query 789 CATGTTTCTTGCATTGCTGGACAATCAGAC--TACGGAGCTCAATCTGTAGCAATCTCTG 846
||| || || ||||||| || ||||||| | | |||||||| ||||| || ||||||
Sbjct 985 CATATTGCTGGCATTGCCGGGCAATCAG-CGGT-TGGAGCTCAGTCTGTGGCCCTCTCTG 1042
Query 847 GAGGTTATAAGGATGACGTGGATCATGGAGAATGGTTTCTATTCACAGGAA--GG-GGAA 903
|||||||| | ||||| | ||||||||| ||||||||||| | |||||||| || ||||
Sbjct 1043 GAGGTTATGACGATGATGAGGATCATGGTGAATGGTTTCTCTACACAGGAAGTGGTGGAA 1102
Query 904 -GG-----A---G-------A-AATT-TCAA-TAAC-G-AG---GATCAGGAGTTTGAAG 939
|| | | | |||| ||| ||| | | || |||| |||| ||
Sbjct 1103 GGGATCTCAGTGGAAACAAAAGAATTAACAAGAAACAGTCGTCTGACCAGGCGTTT-AAA 1161
Query 940 AA-TTGAATGAAGCTTTAAGAGTTAGTTGCGAAATGGGGTATCCAGTTCGAGTTGTCAGG 998
|| |||||||| || ||||| |||||||| ||||||| ||||| || ||||||||||||
Sbjct 1162 AACATGAATGAATCTCTAAGACTTAGTTGCAAAATGGGCTATCCTGTCCGAGTTGTCAGG 1221
Query 999 TCTTACAAGGAGAAGCATTCTGCATATGCCCCTGAGGAAGGAGTGAGATATGATGGTGTC 1058
|||| |||||||||| ||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 1222 TCTTGGAAGGAGAAGCGTTCTGCATATGCCCCTGCTGAAGGTGTGAGATATGATGGGGTC 1281
Query 1059 TA-CAGGATCGAGAAATGCTGGCGAAAAGCTAGATTCCAGGATTCCTGTAAGGTCTGTCG 1117
|| | | || ||||| |||||| | || | | || | |||| ||| | ||||||||||||
Sbjct 1282 TATC-GAATTGAGAAGTGCTGGAGTAATGTTGGAGTACAGGGTTCTTTTAAGGTCTGTCG 1340
Query 1118 TTACCTGTTTGTGAGATGTGACAATGAGCCAGCTCCATGGAACAGTGATGAGAATGGAGA 1177
|||||||||||| |||||||||||||||||||||||||||| |||||||||| |||| ||
Sbjct 1341 TTACCTGTTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCATGGCGA 1400
Query 1178 TCGTCCAAGACCTTTGCCTAATATTCCAGAGCTTGAAACTGCCACAGACCTGTTTGAGAG 1237
|||||||||||| ||||||||| |||| |||||||| ||||| | |||||||||| |||
Sbjct 1401 TCGTCCAAGACCGTTGCCTAATGTTCCGGAGCTTGAGACTGCTGCTGACCTGTTTGTGAG 1460
Query 1238 AAAGGAAAGTCCATCTTGGGATTTTGATGAAGCTGAGGGCCGTTGGAGATGGATGAAGCC 1297
|||||| |||||||| |||||||| |||||||||||||| ||||||| |||||||||| |
Sbjct 1461 AAAGGAGAGTCCATCATGGGATTTCGATGAAGCTGAGGGTCGTTGGAAATGGATGAAGTC 1520
Query 1298 TCCACCTG 1305
||| ||||
Sbjct 1521 TCCTCCTG 1528
> AT1G66050.1 | Symbols: VIM2, ORTH5 | Zinc finger (C3HC4-type
RING finger) family protein | chr1:24589487-24592747 FORWARD
LENGTH=2050
Length=2050
Score = 475 bits (257), Expect = 5e-133
Identities = 787/1032 (76%), Gaps = 80/1032 (8%)
Strand=Plus/Plus
Query 332 TTGTTCT-TTGTGTAATCAATTGCCTGATAGACCCGTTACGACACAATGTGGGCACAACT 390
||||||| || || | ||||||||| || ||||| |||||||||| ||||||||||| |
Sbjct 431 TTGTTCTATT-TGCATTCAATTGCCAGAGAGACCTGTTACGACACCGTGTGGGCACAATT 489
Query 391 TCTGCTTAAAATGTTTTGAGAAGT-GG-A-TTGATCGAGGGAATG-AAACGTGTGCAAAA 446
|||| || |||||||| ||||| | || | | | || |||||| | ||| ||| | |
Sbjct 490 TCTGTTTGAAATGTTTCGAGAAATGGGCAGTAGGTCAAGGGAA-GCTAACTTGTATGATA 548
Query 447 TGTCGTAGCCCAATTCCCGATATA-ATGGCAG-GCAATCCTCGTGTTAAC-TCGTCCCTC 503
|| || ||| |||| |||| | | |||| | |||||||| | ||| | | | ||
Sbjct 549 TGCCGAAGCAAAATT-CCGAGACATGTGGC-GAAAAATCCTCGCATCAACTTAG-CTCTA 605
Query 504 GTGCCTGTTATCCG-TTATGTAAAAGTTGCTAAAGGTGCTGGTGCTGG-AAAT---GCAA 558
|| ||| ||| || ||| | ||| ||| | ||| || |||||| || || | || |
Sbjct 606 GTTTCTGCTATTCGTTTA-GCAAATGTTACCAAATGTTCTGGTG-AGGCAACTGCGGCCA 663
Query 559 AttttttttC-TTTTA-CAAGCAACCAAGGTGGTCCAGAGAATGCTTTTAGAACCAAGC- 615
| || || | ||| | ||||||||| |||| || || || |||| ||| |||
Sbjct 664 A-GGTTCATCATATTATC-CGCAACCAAGACCGTCCTGACAAAGCATTTACTACCGAGCG 721
Query 616 -GC-GCAAAAACTGGGAGGGCGAATGCTGCAT-GTGG-AAGGATATATGTTACTGTACCA 671
|| | ||||||||||| || |||||||| | | || || | | | ||| || ||||
Sbjct 722 GGCAGTAAAAACTGGGAAAGCTAATGCTGC-TAGCGGTAA-GTTTTTTGTGACAATACC- 778
Query 672 T-TTGATCACTTTGGTCCTATACCAGCTGAAAATGATCCTGTC-AGGAACCAAGGTGTTT 729
| |||||| |||||||| |||||||||| |||||| | | || |||||||||||||
Sbjct 779 TCGTGATCATTTTGGTCCCATACCAGCTGCGAATGAT-GTCACTAGAAACCAAGGTGTTT 837
Query 730 TAGTTGGAGAATCCTGGAAGGATCGAGTC--GAATGTCGGCAGTGGGGGGCTCACTTCGC 787
| ||||||||||| ||| |||| | || | || ||| |||||||||| | ||| ||| |
Sbjct 838 TGGTTGGAGAATCTTGGGAGGA-C-AGGCAAGAGTGTAGGCAGTGGGGAGTTCATTTCCC 895
Query 788 ACATGTTTCTTGCATTGCTGGACAATCAGAC--TACGGAGCTCAATCTGTAGCAATCTCT 845
|||||| || ||||||| || ||| ||| | | |||||||| ||||| || |||||
Sbjct 896 GCATGTTGCTGGCATTGCCGGGCAAGCAG-CGGT-TGGAGCTCAGTCTGTGGCCCTCTCT 953
Query 846 GGAGGTTATAAGGATGACGTGGATCATGGAGAATGGTTTCTATTCACAGGAA--GG-GGA 902
||||||||| | ||||| | ||||||||| ||||||||||| | |||||||| || |||
Sbjct 954 GGAGGTTATGACGATGATGAGGATCATGGTGAATGGTTTCTCTACACAGGAAGTGGTGGA 1013
Query 903 A-GG-----A---G------AA-A-TT-TC-A-ATA-A--C-GAGGATCAGGAGTTTGAA 938
| || | | || | || | | ||| | | || |||| |||| ||
Sbjct 1014 AGGGATCTCAGTGGAAACAAAAGAGTTAACAAGATACAGTCTTCTGACCAGGCGTTT-AA 1072
Query 939 GAA-TTGAATGAAGCTTTAAGAGTTAGTTGCGAAATGGGGTATCCAGTTCGAGTTGTCAG 997
|| ||||||||||| ||||| |||||||| ||||||| ||||| || |||||||| ||
Sbjct 1073 AAACATGAATGAAGCTCTAAGACTTAGTTGCAAAATGGGCTATCCTGTCCGAGTTGTAAG 1132
Query 998 GTCTTACAAGGAGAAGCATTCTGCATATGCCCCTGAGGAAGGAGTGAGATATGATGGTGT 1057
||||| |||||||||| ||||||||||||||||| ||||||||||||||| ||||| ||
Sbjct 1133 GTCTTGGAAGGAGAAGCGTTCTGCATATGCCCCTGCGGAAGGAGTGAGATACGATGGGGT 1192
Query 1058 CTACAGGATCGAGAAA-TGCTGGCGAAAAGCTAGATTCCA-GGATTCCTGTAAGGTCTGT 1115
|||||| || || ||| |||||| | || | | | | || || || | |||| | |||
Sbjct 1193 CTACAGAATTGA-AAAGTGCTGGAGTAATGTTGGCGTACAGGGTTTGC-ATAAGATGTGT 1250
Query 1116 CGTTACCTGTTTGTGAGATGTGACAATGAGCCAGCTCCATGGAACAGTGATGAGAATGGA 1175
|||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1251 CGTTACCTGTTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCATGGC 1310
Query 1176 GATCGTCCAAGACCTTTGCCTAATATTCCAGAGCTTGA-AACTGCCACAGACCTGTTTGA 1234
||||||||||||||||||||| || |||||||||| || || ||| || ||||||||||
Sbjct 1311 GATCGTCCAAGACCTTTGCCTGATGTTCCAGAGCTGGAGAA-TGCTACTGACCTGTTTGT 1369
Query 1235 GAGAAAGGAAAGTCCATCTTGGGATTTTGATGAAGCTGAGGGCCGTTGGA-GATGGATGA 1293
||||||||| |||||||| |||| ||| |||||||||||||| ||||||| | |||||||
Sbjct 1370 GAGAAAGGAGAGTCCATCATGGGGTTTCGATGAAGCTGAGGGTCGTTGGAAG-TGGATGA 1428
Query 1294 AGCCTCCACCTG 1305
|| |||||||||
Sbjct 1429 AGTCTCCACCTG 1440
> AT1G66040.1 | Symbols: VIM4, ORTH4 | Zinc finger (C3HC4-type
RING finger) family protein | chr1:24583820-24586681 REVERSE
LENGTH=1869
Length=1869
Score = 470 bits (254), Expect = 2e-131
Identities = 786/1032 (76%), Gaps = 80/1032 (8%)
Strand=Plus/Plus
Query 332 TTGTTCT-TTGTGTAATCAATTGCCTGATAGACCCGTTACGACACAATGTGGGCACAACT 390
||||||| || || | ||||||||| || ||||| || ||||||| ||||||||||| |
Sbjct 384 TTGTTCTATT-TGCATTCAATTGCCAGAGAGACCTGTCACGACACCGTGTGGGCACAATT 442
Query 391 TCTGCTTAAAATGTTTTGAGAAGT-GG-A-TTGATCGAGGGAATG-AAACGTGTGCAAAA 446
|||| || |||||||| ||||| | || | | | || |||||| | ||| ||| | |
Sbjct 443 TCTGTTTGAAATGTTTCGAGAAATGGGCAGTAGGTCAAGGGAA-GCTAACTTGTATGATA 501
Query 447 TGTCGTAGCCCAATTCCCGATATA-ATGGCAG-GCAATCCTCGTGTTAAC-TCGTCCCTC 503
|| || ||| |||| |||| | | |||| | |||||||| | ||| | | | ||
Sbjct 502 TGCCGAAGCAAAATT-CCGAGACATGTGGC-GAAAAATCCTCGCATCAACTTAG-CTCTA 558
Query 504 GTGCCTGTTATCCG-TTATGTAAAAGTTGCTAAAGGTGCTGGTGCTGG-AAAT---GCAA 558
|| ||| ||| || ||| | ||| ||| | ||| || |||||| || || | || |
Sbjct 559 GTTTCTGCTATTCGTTTA-GCAAATGTTACCAAATGTTCTGGTG-AGGCAACTGCGGCCA 616
Query 559 AttttttttC-TTTTA-CAAGCAACCAAGGTGGTCCAGAGAATGCTTTTAGAACCAAGC- 615
| || || | ||| | ||||||||| |||| || || || |||| ||| |||
Sbjct 617 A-GGTTCATCATATTATC-CGCAACCAAGACCGTCCTGACAAAGCATTTACTACCGAGCG 674
Query 616 -GC-GCAAAAACTGGGAGGGCGAATGCTGCAT-GTGG-AAGGATATATGTTACTGTACCA 671
|| | ||||||||||| || |||||||| | | || || | | | ||| || ||||
Sbjct 675 GGCAGTAAAAACTGGGAAAGCTAATGCTGC-TAGCGGTAA-GTTTTTTGTGACAATACC- 731
Query 672 T-TTGATCACTTTGGTCCTATACCAGCTGAAAATGATCCTGTC-AGGAACCAAGGTGTTT 729
| |||||| |||||||| |||||||||| |||||| | | || |||||||||||||
Sbjct 732 TCGTGATCATTTTGGTCCCATACCAGCTGCGAATGAT-GTCACTAGAAACCAAGGTGTTT 790
Query 730 TAGTTGGAGAATCCTGGAAGGATCGAGTC--GAATGTCGGCAGTGGGGGGCTCACTTCGC 787
| ||||||||||| ||| |||| | || | || ||| |||||||||| | ||| ||| |
Sbjct 791 TGGTTGGAGAATCTTGGGAGGA-C-AGGCAAGAGTGTAGGCAGTGGGGAGTTCATTTCCC 848
Query 788 ACATGTTTCTTGCATTGCTGGACAATCAGAC--TACGGAGCTCAATCTGTAGCAATCTCT 845
|||||| || ||||||| || ||| ||| | | |||||||| ||||| || |||||
Sbjct 849 GCATGTTGCTGGCATTGCCGGGCAAGCAG-CGGT-TGGAGCTCAGTCTGTGGCCCTCTCT 906
Query 846 GGAGGTTATAAGGATGACGTGGATCATGGAGAATGGTTTCTATTCACAGGAA--GG-GGA 902
||||||||| | ||||| | ||||||||| ||||||||||| | |||||||| || |||
Sbjct 907 GGAGGTTATGACGATGATGAGGATCATGGTGAATGGTTTCTCTACACAGGAAGTGGTGGA 966
Query 903 A-GG-----A---G------AA-A-TT-TC-A-ATA-A--C-GAGGATCAGGAGTTTGAA 938
| || | | || | || | | ||| | | || |||| |||| ||
Sbjct 967 AGGGATCTCAGTGGAAACAAAAGAGTTAACAAGATACAGTCTTCTGACCAGGCGTTT-AA 1025
Query 939 GAA-TTGAATGAAGCTTTAAGAGTTAGTTGCGAAATGGGGTATCCAGTTCGAGTTGTCAG 997
|| ||||||||||| ||||| |||||||| ||||||| ||||| || |||||||| ||
Sbjct 1026 AAACATGAATGAAGCTCTAAGACTTAGTTGCAAAATGGGCTATCCTGTCCGAGTTGTAAG 1085
Query 998 GTCTTACAAGGAGAAGCATTCTGCATATGCCCCTGAGGAAGGAGTGAGATATGATGGTGT 1057
||||| |||||||||| ||||||||||||||||| ||||||||||||||| ||||| ||
Sbjct 1086 GTCTTGGAAGGAGAAGCGTTCTGCATATGCCCCTGCGGAAGGAGTGAGATACGATGGGGT 1145
Query 1058 CTACAGGATCGAGAAA-TGCTGGCGAAAAGCTAGATTCCA-GGATTCCTGTAAGGTCTGT 1115
|||||| || || ||| |||||| | || | | | | || || || | |||| | |||
Sbjct 1146 CTACAGAATTGA-AAAGTGCTGGAGTAATGTTGGCGTACAGGGTTTGC-ATAAGATGTGT 1203
Query 1116 CGTTACCTGTTTGTGAGATGTGACAATGAGCCAGCTCCATGGAACAGTGATGAGAATGGA 1175
|||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1204 CGTTACCTGTTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCATGGC 1263
Query 1176 GATCGTCCAAGACCTTTGCCTAATATTCCAGAGCTTGA-AACTGCCACAGACCTGTTTGA 1234
||||||||||||||||||||| || |||||||||| || || ||| || ||||||||||
Sbjct 1264 GATCGTCCAAGACCTTTGCCTGATGTTCCAGAGCTGGAGAA-TGCTACTGACCTGTTTGT 1322
Query 1235 GAGAAAGGAAAGTCCATCTTGGGATTTTGATGAAGCTGAGGGCCGTTGGA-GATGGATGA 1293
||||||||| |||||||| |||| ||| |||||||||||||| ||||||| | |||||||
Sbjct 1323 GAGAAAGGAGAGTCCATCATGGGGTTTCGATGAAGCTGAGGGTCGTTGGAAG-TGGATGA 1381
Query 1294 AGCCTCCACCTG 1305
|| |||||||||
Sbjct 1382 AGTCTCCACCTG 1393
> AT3G49080.1 | Symbols: | Ribosomal protein S5 domain 2-like
superfamily protein | chr3:18194154-18196727 REVERSE LENGTH=1709
Length=1709
Score = 139 bits (75), Expect = 7e-32
Identities = 120/140 (86%), Gaps = 9/140 (6%)
Strand=Plus/Plus
Query 1349 TCTTCTCCTTTTTGTC-ATGATCATTTTTGTTGGTTCATCATCTATCTTATACCGGGTTT 1407
|||||||||||||||| || ||||||| || | | || |||| ||||| ||||||||
Sbjct 1384 TCTTCTCCTTTTTGTCTCTG-TCATTTTCATTAG-T--TCGTCTA-CTTATCCCGGGTTT 1438
Query 1408 AGAAGAATCACCGGCAAATAACTTGTTCTTTTGGTTTGATGATCCCTTAGTTATCTTCTT 1467
|||||||||||||||||||||||||||||||||||| | ||||| |||||||||| ||
Sbjct 1439 AGAAGAATCACCGGCAAATAACTTGTTCTTTTGGTTC-A--ATCCCGTAGTTATCTTTTT 1495
Query 1468 GTACCAAAACAGTCTTCTCT 1487
||||||| ||| ||||||||
Sbjct 1496 GTACCAACACATTCTTCTCT 1515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75200416410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5