BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489767
Length=725
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08685.1 | Symbols: SAH7 | Pollen Ole e 1 allergen and exten... 950 0.0
> AT4G08685.1 | Symbols: SAH7 | Pollen Ole e 1 allergen and extensin
family protein | chr4:5550429-5551370 FORWARD LENGTH=725
Length=725
Score = 950 bits (514), Expect = 0.0
Identities = 661/727 (91%), Gaps = 29/727 (4%)
Strand=Plus/Plus
Query 4 TGTTTTCACGTTTAAACGACACTTAAGTGCCCACTGGCCACTTCCATT--CACAC-TCAT 60
||||||||| |||||||||||||||||||||||||||||||||||||| ||| | | ||
Sbjct 6 TGTTTTCACATTTAAACGACACTTAAGTGCCCACTGGCCACTTCCATTGACACCCATTAT 65
Query 61 TACTCT-TCTGTGTCCTCTCTTTTAAAACCTAATCCTCTGTGAATCTTTTCCTGTTAAAA 119
|||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| |||
Sbjct 66 TACTCTGTCTGTGTCCTCTCTTTTAAAACCTAATCCTCTGTGAAACTTTTCCAGTT-AAA 124
Query 120 ATCTTTCTTGCATAATGTCTAAAGCAGTTTTATTGGTGGTTCTCTGCTTTTTACCGGTTC 179
||| || |||| |||||||||||||||| ||||||| | ||||||||||||||||| ||
Sbjct 125 ATC-TT-TTGC--AATGTCTAAAGCAGTTCTATTGGTCGCTCTCTGCTTTTTACCGGCTC 180
Query 180 TAGCCATCGCGGCTAGACCGAACAAGAACCCGTTCGTCGTGCGAGGCCGTGTCTATTGCG 239
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 TAGCCATCGCGGCTAGACCGAACAAGAACCCTTTCGTCGTGCGAGGCCGTGTCTATTGCG 240
Query 240 ACACTTGCCTCGCTGGTTTCGAAACTCCAGCCTCTACTTATATCCATGGTGCGTCCGGTG 299
||||||||||||||||||||||||||||||||||||| | || || | | |||||||
Sbjct 241 ACACTTGCCTCGCTGGTTTCGAAACTCCAGCCTCTAC-T-TA--CA---T-C-TCCGGTG 291
Query 300 CGGTGGTTAGATTGGAATGTAAAGACAGGAGGACAATGGAGTTAACGTATAGCCACGAGG 359
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 292 CAGTGGTTAGATTGGAATGTAAAGACAGGAGAACAATGGAGTTAACGTATAGCCACGAGG 351
Query 360 CGAGAACTGACTCGACAGGATCATACAAGATTTTGGTTAACGAGGATCACGATGATCAGT 419
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 352 CGAGAACTGACTCGACAGGATCATACAAGATCTTGGTTAACGAGGATCATGATGAGCAGT 411
Query 420 TCTGTGATGCAATGTTGGTTCGTAGCTCTCAGTTACGGTGTTCTAATGTCTCCCCTGGCC 479
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 412 TCTGTGATGCAATGTTGGTTCGTAGCTCTCAGTTACGGTGTTCCAATGTGTCCCCTGGTC 471
Query 480 ATGACCGTGCCCGTGTGACTCTCACTCGTTTTAACGGTATTGCTTCAGACGACCGTTTTG 539
|||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 472 ATGACCGTGCCCGTGTGACTCTCACTCGCTTCAACGGTATTGCTTCTGACGACCGTTTTG 531
Query 540 CTAACAACATGGGATTTCTGAGGGATGCTGCTATGCCGGGTTGTGCCGATATCATGAAGC 599
||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 532 CTAACAACATGGGATTTCTAAGGGATGCAGCTATGCCGGGTTGTGCGGATATCATGAAGC 591
Query 600 TATATCAAGAAACCGAGGACTAGTTT-TGGTGTTTTGTTAAGTATGTGGTATCAGGGTAT 658
|||| ||||||||||||||||||||| | |||||||||||||||||||||| | | |
Sbjct 592 TATACCAAGAAACCGAGGACTAGTTTCTC-TGTTTTGTTAAGTATGTGGTATTAAAATGT 650
Query 659 ACTGCAACCTGTGGTATGTGCATTTTATTGCACTTCTCTGTCTTGGTTTTATTACTAATC 718
| |||| | |||| |||||||||||||| | | | | | ||||||||||||||||
Sbjct 651 ATTGCAGCTTGTGTTATGTGCATTTTAT--C--TG-T--GAC--GGTTTTATTACTAATC 701
Query 719 GAAAAAA 725
|||||||
Sbjct 702 GAAAAAA 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35163902900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5