BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489770
Length=1114
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08700.1 | Symbols: ATPUP13 | Drug/metabolite transporter su... 1533 0.0
AT5G41160.1 | Symbols: ATPUP12, PUP12 | purine permease 12 | ch... 1421 0.0
> AT4G08700.1 | Symbols: ATPUP13 | Drug/metabolite transporter
superfamily protein | chr4:5565853-5567458 REVERSE LENGTH=1403
Length=1403
Score = 1533 bits (830), Expect = 0.0
Identities = 994/1071 (93%), Gaps = 20/1071 (2%)
Strand=Plus/Plus
Query 60 TTGGTGGATTCTTGTCTTCATAAGCATCTTCTTCCTCATCTCTGCTCAAGCCATTGCTGT 119
|||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 271 TTGGTGGATTCTTGTCTTTATAAGTATCTTCTTCCTCATCTCTGCACAAGCCATTGCTGT 330
Query 120 TCTTCTTGGTCGGTTTTATTACAACGAAGGTGGAAACAGTAAATGGATCTCTACTCTTGT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 TCTTCTTGGTCGGTTTTATTACAACGAAGGTGGAAACAGTAAATGGATCTCTACTCTTGT 390
Query 180 CCAAACGGGTGGCTTTCCGAttctttatcttcctctttgtctccttcctgcttcacaatc 239
|||||| |||| ||||||||||| ||||| ||||||||| |||||||||||||||| ||
Sbjct 391 CCAAACTTGTGGTTTTCCGATTCTCTATCTCCCTCTTTGTTTCCTTCCTGCTTCACACTC 450
Query 240 ttcttcatcttcttgttctttcAAGACTCTGGTTTGGATTTATCTTTCGCTTGGTTTTGC 299
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 451 TTCTTCATCTTCTTGTTCTTTCAAGACTCTGGTTTGGATTTATCTTTCTCTTGGTTTTGC 510
Query 300 TATTGGTTTAGACAATCTTTTATACTCTATTGGGCTTTTGTATCACTCTGCTTCGACTTA 359
|||||||||||||||||||||||||||| |||| |||||||||| ||||||||| |||||
Sbjct 511 TATTGGTTTAGACAATCTTTTATACTCTTTTGGTCTTTTGTATCTCTCTGCTTCAACTTA 570
Query 360 TTCGATTCTATGTGCTTCACAGTTAGCTTTCAATGGTGTCTTCTCTTATTACATCAATTC 419
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 TTCGATTCTTTGTTCTTCACAGTTAGCTTTCAATGGTGTCTTCTCTTATTACATCAATTC 630
Query 420 TCAGAAAATCACTTGTTTGATTCTCTTCTCAGTGTTGTTTCTCTCTATCTCTGCTGTGTT 479
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 631 TCAGAAAATCACTTGTTTGATTCTCTTCTCTGTGTTGTTTCTCTCTGTCTCTGCTGTGTT 690
Query 480 GGTTTCTCTTGACGATGATTCCAATAGCCCATCAGGAGATTCTAAGTGGAGTTACTTGAT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 GGTTTCTCTTGACGATGATTCCAATAGCCCATCAGGAGATTCTAAGTGGAGTTACTTGAT 750
Query 540 TGGTTGTTTCTGTACAGTTTTGGCTTCTCTTATCTATTCTCTTCAGCTCTCTCTTATGCA 599
||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 751 TGGTTGTTTATGTACTGTTTTTGCTTCTCTTATCTATTCTCTTCAGCTCTCTCTTATGCA 810
Query 600 GTTTTCGTTCGAGAATGTTCTCAAGAGTGAGACTTTCGCTATGGTTCTCGAGATGCAGAT 659
|||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| ||
Sbjct 811 GTTTTCTTTCGAGAATGTTCTCAAGAGTGAGACGTTCTCTATGGTTCTCGAGATGCAAAT 870
Query 660 CTATACGTCACTTGTGGCTTCTTGTGTTGCGGTTATCGGGTTGTTTGCGAGCGGGGAATG 719
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 CTATACGTCGCTTGTGGCTTCTTGTGTTGCGGTTATCGGGTTGTTTGCGAGCGGGGAATG 930
Query 720 GAAGTTGTTGAGTGTGGAGATGGAAGAGTTTCA-GAAGGGTCAAGTCATTTATGTTTTGA 778
|| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 931 GATGTTGTTGAGTGTGGAGATGGAAGAGTTTCACGA-GGGTCAAGTCATTTATGTTTTGA 989
Query 779 CTTTGGTTGGGACAGCGGTTTCGTGGCAATTGGGTTCTTTAGGAGCCGTGGCGCTTATAT 838
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 990 CTTTGGTTGGGACCGCGGTTTCGTGGCAATTGGGTTCTGTAGGAGCCGTGGCGCTTATAT 1049
Query 839 TTCTGGTGTCGTCGCTGTTCTCGAACCTTATTGGTACGCTCTCACTCATTGTAACGCCTC 898
||||||| || |||||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct 1050 TTCTGGTTTCTTCGCTGTTTTCGAACCTTATTGGTACACTCTCACTCATTGTTACGCCTC 1109
Query 899 TTGCTGCCATTGCCGTGTTCCACGACAAGCTGACTGAAGTTAAGATGGTCGCAATGCTCA 958
|||| |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1110 TTGCAGCCATTGCGGTGTTCCACGACAAGCTGACTGAGGTTAAGATGGTCGCGATGCTCA 1169
Query 959 TCGCGTTCACGGGATTCGCGTTTTATATCTACCAGAATTATCTTGATGACTTGAACGTAC 1018
| || |||| ||| |||| ||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1170 TTGCCTTCATGGGGTTCGGGTTTTATATCTACCAGAATTATCTTGATGACCTGAAAGTAC 1229
Query 1019 AAAGAGCACGAAAAACCCAGGCCGAACTA-TT-T--TA-GTT--A---GTTG-TTTTAT- 1066
||||||||||| || | ||||| ||| || || | | ||| | ||| |||| |
Sbjct 1230 AAAGAGCACGAGAAGCTCAGGCTGAA-TAGTTCTGCTGTGTTTTATTAGTTAATTTTGTT 1288
Query 1067 A--AAC-TATTGT-AGAACAAGGTAGCTACAAATGTTGTATTCTATATAGT 1113
| ||| | || | |||||||| ||||||||| ||||||||| ||||||||
Sbjct 1289 AGTAACCT-TTCTTAGAACAAGCTAGCTACAAGTGTTGTATTGTATATAGT 1338
> AT5G41160.1 | Symbols: ATPUP12, PUP12 | purine permease 12 |
chr5:16477360-16478436 FORWARD LENGTH=1077
Length=1077
Score = 1421 bits (769), Expect = 0.0
Identities = 921/994 (93%), Gaps = 11/994 (1%)
Strand=Plus/Plus
Query 61 TGGTGGATTCTTGTCTTCATAAGCATCTTCTTCCTCATCTCTGCTCAAGCCATTGCTGTT 120
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 82 TGGTGGATTCTTGTTTTCATAAGCATCTTCTTTCTCATCTCTGCTCAAGCCATTTCTGTT 141
Query 121 CTTCTTGGTCGGTTTTATTACAACGAAGGTGGAAACAGTAAATGGATCTCTACTCTTGTC 180
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 142 CTTCTTGGTCGGTTTTATTACAATGAAGGTGGAAACAGTAAATGGATCTCTACTCTTGTT 201
Query 181 CAAACGGGTGGCTTTCCGAttctttatcttcctctttgtctccttcctgcttcacaa--- 237
||||| ||||||||||| ||||||||||| ||||||| |||||||||||||||||||
Sbjct 202 CAAACTGGTGGCTTTCCCATTCTTTATCTCCCTCTTTCTCTCCTTCCTGCTTCACAATCT 261
Query 238 ------tcttcttcatcttcttgttctttcAAGACTCTGGTTTGGATTTATCTTTCGCTT 291
|||||||| ||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 262 TCTTCTTCTTCTTCTTCTTCTTCTTCTTTCAAGACTCTGGTTTGGATTTATCTTTCTCTT 321
Query 292 GGTTTTGCTATTGGTTTAGACAATCTTTTATACTCTATTGGGCTTTTGTATCACTCTGCT 351
|||||||||||||||||||| ||| ||||||||||| |||| |||||||||| |||||||
Sbjct 322 GGTTTTGCTATTGGTTTAGATAATTTTTTATACTCTGTTGGACTTTTGTATCTCTCTGCT 381
Query 352 TCGACTTATTCGATTCTATGTGCTTCACAGTTAGCTTTCAATGGTGTCTTCTCTTATTAC 411
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 382 TCAACTTATTCGATTCTATGTGCTTCACAGTTAGCTTTCAATGGTGTCTTCTATTATTAC 441
Query 412 ATCAATTCTCAGAAAATCACTTGTTTGATTCTCTTCTCAGTGTTGTTTCTCTCTATCTCT 471
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 442 ATCAATTCTCAGAAAATCACTTGTTTGATTTTCTTCTCAGTGTTGTTTCTCTCTATCTCT 501
Query 472 GCTGTGTTGGTTTCTCTTGACGATGATTCCAATAGCCCATCAGGAGATTCTAAGTGGAGT 531
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 502 GCTGTGTTGGTTTCTCTTGACGATGATTCAAATAGCCCATCAGGAGATTCTAAGTGGAGT 561
Query 532 TACTTGATTGGTTGTTTCTGTACAGTTTTGGCTTCTCTTATCTATTCTCTTCAGCTCTCT 591
||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 562 TACTTGATTGGGTGTTTCTGTGCAGTTTTTGCTTCTCTTATCTATTCTCTTCAGCTCTCT 621
Query 592 CTTATGCAGTTTTCGTTCGAGAATGTTCTCAAGAGTGAGACTTTCGCTATGGTTCTCGAG 651
|||||||||||||| |||||||| |||||||||||||||||| || ||||||||||||||
Sbjct 622 CTTATGCAGTTTTCTTTCGAGAAGGTTCTCAAGAGTGAGACTCTCTCTATGGTTCTCGAG 681
Query 652 ATGCAGATCTATACGTCACTTGTGGCTTCTTGTGTTGCGGTTATCGGGTTGTTTGCGAGC 711
||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||| || |||
Sbjct 682 ATGCAAATCTATACGTCGCTTGTGGCTTCTTGTGTAGCGGTTATCGGATTGTTCGCAAGC 741
Query 712 GGGGAATGGAAGTTGTTGAGTGTGGAGATGGAAGAGTTTCAG-AAGGGTCAAGTCATTTA 770
|||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 742 GGGGAATGGATGTTGTTGAGTGTGGAGATGGAAGAGTTTCAGGAAGG-TCAAGTCATTTA 800
Query 771 TGTTTTGACTTTGGTTGGGACAGCGGTTTCGTGGCAATTGGGTTCTTTAGGAGCCGTGGC 830
||||||||||||||| ||| ||||||||||||| |||||||||| | ||||||||||| |
Sbjct 801 TGTTTTGACTTTGGTCGGGGCAGCGGTTTCGTGTCAATTGGGTTGTGTAGGAGCCGTGTC 860
Query 831 GCTTATATTTCTGGTGTCGTCGCTGTTCTCGAACCTTATTGGTACGCTCTCACTCATTGT 890
|||||||||||||||||| |||||||| || ||||||||| |||||||||||||||||||
Sbjct 861 GCTTATATTTCTGGTGTCTTCGCTGTTTTCAAACCTTATTAGTACGCTCTCACTCATTGT 920
Query 891 AACGCCTCTTGCTGCCATTGCCGTGTTCCACGACAAGCTGACTGAAGTTAAGATGGTCGC 950
|||||||| || |||||||| |||||||| |||||||||||||| ||||||||||| ||
Sbjct 921 TACGCCTCTCGCGGCCATTGCGGTGTTCCATGACAAGCTGACTGAGGTTAAGATGGTGGC 980
Query 951 AATGCTCATCGCGTTCACGGGATTCGCGTTTTATATCTACCAGAATTATCTTGATGACTT 1010
|||| |||||| ||||| |||||| ||||||||||||||||||| ||||||||||||||
Sbjct 981 GATGCCCATCGCCTTCACAGGATTCACGTTTTATATCTACCAGAACTATCTTGATGACTT 1040
Query 1011 GAACGTACAAAGAGCACGAAAAACCCAGGCCGAA 1044
||| ||||||||||||||| || | |||||||||
Sbjct 1041 GAAAGTACAAAGAGCACGAGAAGCTCAGGCCGAA 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54618192960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5