BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489775
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08770.1 | Symbols: Prx37 | Peroxidase superfamily protein |... 1618 0.0
AT4G08780.1 | Symbols: | Peroxidase superfamily protein | chr4... 1602 0.0
AT5G19890.1 | Symbols: | Peroxidase superfamily protein | chr5... 86.1 6e-16
> AT4G08770.1 | Symbols: Prx37 | Peroxidase superfamily protein
| chr4:5598115-5600312 REVERSE LENGTH=1235
Length=1235
Score = 1618 bits (876), Expect = 0.0
Identities = 987/1042 (95%), Gaps = 2/1042 (0%)
Strand=Plus/Plus
Query 1 ATGTATTCCTCTTTGATAAAATTGGGATttcttcttcttcttcttcAGGTATCATTGTCT 60
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 51 ATGCATTCCTCTTTGATAAAATTGGGATTTCTTCTTCTTCTTATTCAGGTATCATTGTCT 110
Query 61 CATGCTCAACTAAGCCCTTCCTTTTACGATAAAACATGTCCGCAAGTCTTTGACATTGTA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 111 CATGCTCAACTAAGCCCTTCCTTTTACGATAAAACATGTCCGCAAGTCTTTGACATTGCA 170
Query 121 ACCAATACCATTGTCAATGCTCTGAGATCAGACCCTCGCATCGCTGCAAGCATCCTTCGT 180
|||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 171 ACCACTACCATTGTCAATGCTCTAAGATCGGACCCTCGCATCGCTGCAAGCATCCTTCGT 230
Query 181 CTTCATTTCCACGACTGCTTTGTTAATGGATGTGATGCATCGATATTGTTAGACAACACA 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 CTTCATTTCCACGACTGCTTTGTTAATGGATGTGATGCATCGATATTGTTAGACAACACC 290
Query 241 ACATCGTTTAGGACGGAGAAAGACGCCTTTGGGAACGCTAATTCCGCTCGAGGTTTCGAT 300
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 291 ACATCGTTTAGGACGGAGAAAGATGCGTTTGGGAACGCTAATTCCGCTCGAGGTTTCGAT 350
Query 301 GTGATCGACAAAATGAAAGCCGCCGTGGAGAAAGCATGTCCTGGAACCGTTTCGTGTGCT 360
||||||||||||||||| || ||||||||||||||||||||| ||| ||||| ||||||
Sbjct 351 GTGATCGACAAAATGAAGGCTGCCGTGGAGAAAGCATGTCCTAAAACTGTTTCATGTGCT 410
Query 361 GATATGCTCGCCATCGCAGCTCAAGAATCTGTCGTTTTGGCAGGAGGTCCTTCATGGAGG 420
||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 411 GATTTGCTCGCCATCGCGGCTCAAGAATCTGTCGTTTTGGCGGGAGGTCCTTCATGGAGG 470
Query 421 GTTCCAAATGGAAGAAGAGACAGCTTAAGAGGGTTTATGGATCTTGCTAATAATAACCTT 480
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 471 GTTCCAAATGGAAGAAGAGACAGCTTAAGAGGGTTCATGGATCTTGCTAATGATAACCTT 530
Query 481 CCAGGTCCATCCTCTACCCTTCAAG-AACTTAAGGATAGATTCAAAAATGTCGGACTAGA 539
|||| ||||| || ||||||| || |||||||||||||||||||||| |||||||| ||
Sbjct 531 CCAGCTCCATTCTTTACCCTT-AACCAACTTAAGGATAGATTCAAAAACGTCGGACTCGA 589
Query 540 CCGTCCTTCTGATCTCGTTGCTCTTTCCGGTGGTCACACCTTTGGCAAAAACCAATGTCA 599
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 590 CCGTGCTTCTGATCTCGTTGCTCTTTCTGGTGGTCACACCTTTGGCAAAAACCAATGTCA 649
Query 600 GTTCATAATAGATCGCCTTTACAACTTCGGTGATACCGGTTTACCCGACCCAACCCTTGA 659
|||||||| ||||| ||||| |||||| || | || |||||||||||||||||||||||
Sbjct 650 ATTCATAATGGATCGGCTTTATAACTTCAGTAACACTGGTTTACCCGACCCAACCCTTGA 709
Query 660 TAAATCTTACCTCGCAACACTCAGAAAACAATGTCCACGTAATGGAAACAAGAGTGTCTT 719
||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 710 TAAATCTTACCTCTCCACACTCAGAAAACAATGTCCACGTAATGGAAACCAGAGTGTATT 769
Query 720 GGTAGATTTTGATTTCCGTACACCAACAGTCTTTGACAACAAATACTATGTGAATCTCAA 779
||||||||||||||| ||||| |||||| ||||||||||||| || |||||||| |||||
Sbjct 770 GGTAGATTTTGATTTACGTACGCCAACACTCTTTGACAACAAGTATTATGTGAACCTCAA 829
Query 780 GGAGAACAAAGGACTTATCCAGACCGACCAAGAGTTATTCTCTAGCCCTGATGCTTCAGA 839
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 830 GGAGAACAAAGGACTTATCCAGAGCGACCAAGAGTTATTCTCTAGCCCTGATGCTTCAGA 889
Query 840 CACTCTCCCTTTAGTCCGAGAATACGCTGATGGTCAAGGGAAATTTTTCGATGCGTTCGC 899
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 CACTCTTCCTTTAGTCCGAGAATACGCTGATGGTCAAGGGAAATTTTTCGATGCGTTCGC 949
Query 900 GAAGGCAATGATAAGAATGAGTAGTCTTTCACCTTTAACAGGGAAACAAGGAGAAATTAG 959
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 950 GAAGGCAATGATAAGGATGAGTAGTCTTTCACCTTTAACAGGGAAACAAGGAGAAATAAG 1009
Query 960 ATTGAACTGTAGAGTGGTGAATTCGAAATCTAGAATCATGGATGTGGTAGAAGATGCTAT 1019
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1010 ATTGAACTGTAGAGTGGTGAATTCGAAATCTAAAATCATGGATGTGGTAGAAGATGCTCT 1069
Query 1020 TGAATTTGCTAGCTCAATGTGA 1041
||||||||| ||||||||||||
Sbjct 1070 TGAATTTGCAAGCTCAATGTGA 1091
> AT4G08780.1 | Symbols: | Peroxidase superfamily protein | chr4:5604153-5608202
FORWARD LENGTH=1041
Length=1041
Score = 1602 bits (867), Expect = 0.0
Identities = 983/1041 (94%), Gaps = 0/1041 (0%)
Strand=Plus/Plus
Query 1 ATGTATTCCTCTTTGATAAAATTGGGATttcttcttcttcttcttcAGGTATCATTGTCT 60
||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1 ATGCATTCCTCTTTGATAAAATTGGGATTTCTTCTTCTCCTTCTTCAGGTCTCATTGTCT 60
Query 61 CATGCTCAACTAAGCCCTTCCTTTTACGATAAAACATGTCCGCAAGTCTTTGACATTGTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CATGCTCAACTAAGCCCTTCCTTTTACGATAAAACATGTCCGCAAGTCTTTGATATTGTA 120
Query 121 ACCAATACCATTGTCAATGCTCTGAGATCAGACCCTCGCATCGCTGCAAGCATCCTTCGT 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACCAATACCATTGTCAATGCGCTGAGATCAGACCCTCGCATCGCTGCAAGCATCCTTCGT 180
Query 181 CTTCATTTCCACGACTGCTTTGTTAATGGATGTGATGCATCGATATTGTTAGACAACACA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTCATTTCCACGACTGCTTTGTTAATGGATGTGATGCATCGATATTGTTAGACAACACA 240
Query 241 ACATCGTTTAGGACGGAGAAAGACGCCTTTGGGAACGCTAATTCCGCTCGAGGTTTCGAT 300
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 241 ACATCGTTTAGGACGGAGAAAGATGCGTTTGGGAACGCTAATTCAGCTCGAGGTTTCGAT 300
Query 301 GTGATCGACAAAATGAAAGCCGCCGTGGAGAAAGCATGTCCTGGAACCGTTTCGTGTGCT 360
|| |||||||||||||| || ||| | ||||||||||||||| |||||||||| ||||||
Sbjct 301 GTAATCGACAAAATGAAGGCTGCCATCGAGAAAGCATGTCCTAGAACCGTTTCATGTGCT 360
Query 361 GATATGCTCGCCATCGCAGCTCAAGAATCTGTCGTTTTGGCAGGAGGTCCTTCATGGAGG 420
||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||| |
Sbjct 361 GATATGCTCGCCATCGCAGCTAAAGAATCTATCGTTTTGGCGGGAGGTCCTTCATGGATG 420
Query 421 GTTCCAAATGGAAGAAGAGACAGCTTAAGAGGGTTTATGGATCTTGCTAATAATAACCTT 480
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 421 GTTCCAAATGGAAGAAGAGACAGCTTAAGAGGTTTTATGGATCTTGCTAATGATAACCTT 480
Query 481 CCAGGTCCATCCTCTACCCTTCAAGAACTTAAGGATAGATTCAAAAATGTCGGACTAGAC 540
||||||||||| ||||| ||| || ||||||||||||||||||||||||||||||| |||
Sbjct 481 CCAGGTCCATCTTCTACACTTAAACAACTTAAGGATAGATTCAAAAATGTCGGACTCGAC 540
Query 541 CGTCCTTCTGATCTCGTTGCTCTTTCCGGTGGTCACACCTTTGGCAAAAACCAATGTCAG 600
||| |||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 541 CGTTCTTCTGATCTAGTTGCTCTTTCCGGTGGTCACACTTTTGGCAAAAGCCAATGTCAG 600
Query 601 TTCATAATAGATCGCCTTTACAACTTCGGTGATACCGGTTTACCCGACCCAACCCTTGAT 660
|||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 601 TTCATAATGGATCGTCTTTACAACTTCGGTGAAACCGGTTTACCCGACCCAACCCTTGAT 660
Query 661 AAATCTTACCTCGCAACACTCAGAAAACAATGTCCACGTAATGGAAACAAGAGTGTCTTG 720
||||||||||| || ||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 661 AAATCTTACCTAGCCACACTAAGAAAACAATGTCCACGTAATGGAAACCAGAGTGTCTTG 720
Query 721 GTAGATTTTGATTTCCGTACACCAACAGTCTTTGACAACAAATACTATGTGAATCTCAAG 780
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 721 GTAGATTTTGATTTACGTACACCAACACTCTTTGACAACAAATACTATGTGAATCTCAAG 780
Query 781 GAGAACAAAGGACTTATCCAGACCGACCAAGAGTTATTCTCTAGCCCTGATGCTTCAGAC 840
|||||||||||||||||||| | ||||||||||| |||||||||||||||||| |||||
Sbjct 781 GAGAACAAAGGACTTATCCAAAGTGACCAAGAGTTGTTCTCTAGCCCTGATGCTGCAGAC 840
Query 841 ACTCTCCCTTTAGTCCGAGAATACGCTGATGGTCAAGGGAAATTTTTCGATGCGTTCGCG 900
|||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 841 ACTCTCCCTTTAGTTCGAGCATACGCTGATGGTCAAGGGACATTTTTCGATGCGTTCGTG 900
Query 901 AAGGCAATGATAAGAATGAGTAGTCTTTCACCTTTAACAGGGAAACAAGGAGAAATTAGA 960
|| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 901 AAAGCAATAATAAGGATGAGTAGTCTTTCACCTTTAACAGGGAAACAAGGAGAAATAAGA 960
Query 961 TTGAACTGTAGAGTGGTGAATTCGAAATCTAGAATCATGGATGTGGTAGAAGATGCTATT 1020
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||
Sbjct 961 TTGAACTGTAGAGTGGTGAATTCGAAATCTAAAATCATGGATGTGGTAGATGATGCTCTT 1020
Query 1021 GAATTTGCTAGCTCAATGTGA 1041
|||||||| |||| ||||||
Sbjct 1021 GAATTTGCCAGCTTTATGTGA 1041
> AT5G19890.1 | Symbols: | Peroxidase superfamily protein | chr5:6724115-6725923
REVERSE LENGTH=1290
Length=1290
Score = 86.1 bits (46), Expect = 6e-16
Identities = 52/55 (95%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 176 TTCGTCTTCATTTCCACGACTGCTTTGTTAATGGATGTGATGCATCGATATTGTT 230
|||||||||||||||||||||||||||||||||| |||||||| ||| |||||||
Sbjct 240 TTCGTCTTCATTTCCACGACTGCTTTGTTAATGGGTGTGATGCGTCGTTATTGTT 294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51037893352
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5