BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489778
Length=1836
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08810.1 | Symbols: SUB1 | calcium ion binding | chr4:561605... 2512 0.0
> AT4G08810.1 | Symbols: SUB1 | calcium ion binding | chr4:5616052-5617939
REVERSE LENGTH=1888
Length=1888
Score = 2512 bits (1360), Expect = 0.0
Identities = 1679/1827 (92%), Gaps = 46/1827 (3%)
Strand=Plus/Plus
Query 24 ATGAAGGAATCAGATCTAACCACCGAACCAATCGCTCAGAATCTAATCAAGCTTATCAGC 83
||||||||||||||||||||||||||||||||||| || |||||||||||||| || |||
Sbjct 78 ATGAAGGAATCAGATCTAACCACCGAACCAATCGCACAAAATCTAATCAAGCTAATAAGC 137
Query 84 AATGTCTGTTTCTCAGTCTTCGTCTTCACAGTTCTCATATTCACAGTAATTGCCGTCACT 143
||||||||||||||||||||||| |||||||||||||| ||||||||||| || || |||
Sbjct 138 AATGTCTGTTTCTCAGTCTTCGTTTTCACAGTTCTCATCTTCACAGTAATCGCAGTAACT 197
Query 144 TACCAACCACCAGATCCATGGCTTGAATCTGCTCCAGCTCTCACCAAACTCCTAACCGAA 203
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 198 TACCAACCACCAGATCCATGGCTTGAATCTGCTCCAGCACTCACCAAACTCCTAACCGAA 257
Query 204 ACCGAAAACGCATCTTTCAAAATCGACGGTTCGATGCTCAAAACCGGTGAAGATATCGCT 263
|||||||||||| |||||||||||||||||||||| ||||||||||| |||||| |||||
Sbjct 258 ACCGAAAACGCAACTTTCAAAATCGACGGTTCGATTCTCAAAACCGGCGAAGATCTCGCT 317
Query 264 TC-T-T-C-T--TC-T--CCGGTTTC-AGCTCCGGCGGGGCTAGTTACGGAGGCGACGAT 313
|| | | | | || | || || | |||| | | || ||| ||||||||||||||
Sbjct 318 TCATCTCCGTCATCATCACCTCCGTCGAACTCC-ACAGAGCAAGTCACGGAGGCGACGAT 376
Query 314 TGAGAAATCCGAGGAGAGAATCGGGAATATGACGGTGAAGAACTCTTCTTCTGATTATTC 373
|||||||||||||| || |||||| |||||||| |||||||| | || | | | | |
Sbjct 377 TGAGAAATCCGAGGCGAAAATCGGTAATATGACTGTGAAGAA--C-TC-TAT-A-GA-T- 428
Query 374 TATGGATTGTGATGATTTGAAGATTGTGAATTGTTCGGATCCGAGAGTTTTAGTTGCTGT 433
| | || ||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 429 TGT-GA---TGAGGATTTGAAGATTGTGAATTGTTCTGATCCGAGAGTTTTAGTTGCTGT 484
Query 434 TGAAAGGTTTAATTTGAAGGTTTTTAAGTCTATTGTGTTCTTAGAGTACGAAACTCCGGT 493
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 485 TGAGAGGTTTAATTTGAAGGTTTTTAAATCTATTGTGTTCTTAGAGTACGAAACTCCGGT 544
Query 494 TAACGGATCGAATTTAGACGAATGCGATGTTTCGTGGAGGTTTAGGAATAAGAAGGAGAA 553
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 545 TAACGGATCGAAACTAGACGAATGCGATGTTTCTTGGAGGTTTAGGAATAAGAAGGAGAA 604
Query 554 GTCATGGAGGAGATATAGAGATTTCAGGAGGTTTAAGTTTGGATTTGGTGAGAATTGTAC 613
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 605 GTCATGGAGGAGATACAGAGATTTCAGGAGGTTTAGGTTTGGATTTGGTGAGAATTGTAC 664
Query 614 TTATAAAGTGTTTCATACTAGTGGTTGGCATTCTGGTGTTAATGCTCGTAGGCCTAGGA- 672
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 TTATAAAGTGTTTCATACTAGTGGTTGGCATTCTGGTGTTAATGCTCGTAGGCCTAGGAT 724
Query 673 T--TAGACCGAGCTCGAGTAGAGGCGGTGGACCGAAGGTTGTGCGTGGTGGTGATCCCGA 730
| |||||||||||||||| | || | | | | || ||||||||| | ||
Sbjct 725 TAGTAGACCGAGCTCGAGT-----C----GA--GGA-G--CT-CGCGGTGGTGATTCGGA 769
Query 731 GATTAATGATACGATTCCGACTCTTGGTTCGCAGACGAATTTCAGGAGAGGGAAGTATTT 790
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 770 GATTAATGATACGATTCCGACTCTTGGTTCGCAGACGAGTTTCCGGAGAGGGAAGTATTT 829
Query 791 GTATTATTCGCGGGGAGGTGATTATTGTAAGGGGATGAATCAGTATATGTGGAGTTTCTT 850
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 830 GTATTATTCGCGGGGTGGTGATTATTGTAAGGGTATGAATCAGTATATGTGGAGTTTCTT 889
Query 851 GTGTGGTTTAGGTGAAGCAATGTATTTGAATAGGACTTTTGTTATGGATTTGAGTTTGTG 910
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 890 GTGTGGTTTAGGTGAAGCAATGTATTTGAATAGGACTTTTGTGATGGATTTGAGTTTGTG 949
Query 911 TTTGTCTGCAAGTTATAGTTCCACGGGGAAGGATGAGGAGGGTAAGGATTTTCGGTATTA 970
||||||| | ||||||||||| | |||||| |||||||| ||||||||||||||||||||
Sbjct 950 TTTGTCTTCGAGTTATAGTTCTAAGGGGAAAGATGAGGAAGGTAAGGATTTTCGGTATTA 1009
Query 971 CTTTGATTTCGAGCATCTTAAAGAAACGGCTTCTATTGTTGAAGAGGGTGAGTTTTTGAG 1030
|||||||||||||||||||| || |||||||| |||||||||||||||||||| |||||
Sbjct 1010 TTTTGATTTCGAGCATCTTAAGGAGACGGCTTCGATTGTTGAAGAGGGTGAGTTCTTGAG 1069
Query 1031 AGATTGGAAGAAATGGAATCGGTCGCATAAACGGAAAGTTCCTGTAAGGAAGGTTAAGAC 1090
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1070 AGATTGGAAGAAATGGAATCGGTTGCATAAACGGAAAGTTCCTGTTAGGAAGGTTAAGAC 1129
Query 1091 GCATAAAGTGTCGCCTTTGCAGCTTAGTAAAGATAAGAGTACGATTATATGGAGGCAGTT 1150
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 GCATAGAGTGTCGCCTTTGCAGCTTAGTAAAGATAAGAGTACGATTATATGGAGGCAGTT 1189
Query 1151 TGATACTCCTGAACCTGAAAACTATTGGTATAGAGTGTGTGAAGGGCAAGCGTCAAAGTA 1210
|||||||||||| ||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 1190 TGATACTCCTGAGCCTGAAAACTATTGGTATAGAGTTTGTGAAGGGCAAGCATCGAAGTA 1249
Query 1211 TGTGGAGAGGCCGTGGCACGCATTGTGGAAATCGAAGAGATTGATGAACATTGTCTCTGA 1270
||| |||||||||||||| || |||||||| |||||||| |||||||| |||||||||||
Sbjct 1250 TGTTGAGAGGCCGTGGCATGCGTTGTGGAAGTCGAAGAGGTTGATGAATATTGTCTCTGA 1309
Query 1271 GATTAGTGGGAAAATGGACTGGGACTTTGATGCGGTTCATGTGGTTAGAGGCGAGAAAGC 1330
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1310 GATTAGTGGGAAAATGGACTGGGATTTTGATGCTGTTCATGTGGTTAGAGGCGAGAAAGC 1369
Query 1331 GAAGAACAAGAAGCTTTGGCCACATTTGGATGCAGACACATGGCCTGATGCAATATTGAC 1390
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1370 GAAGAACAAGAAGCTATGGCCACATTTGGATGCAGACACATGGCCTGATGCGATATTGAC 1429
Query 1391 CAAACTGAAAGGACTGGTTCAGGTGTGGAGGAATTTGTACGTCGCCACCAATGAACCGTT 1450
|||||| |||||| |||||||||||||||||||||||||||| || || |||||||||||
Sbjct 1430 CAAACTTAAAGGATTGGTTCAGGTGTGGAGGAATTTGTACGTTGCAACTAATGAACCGTT 1489
Query 1451 CTATAATTACTTTGACAAATTGAGGTCTCAGTACAAGGTTCACTTGCTTGATGACTACAG 1510
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1490 TTATAATTACTTTGACAAGTTGAGGTCTCAGTACAAGGTTCACTTGCTTGATGACTATAG 1549
Query 1511 CTACTTGTGGGGGAACAAGAGTGAGTGGTACAATGAGACAAGTCTCTTGAACAATGGTAA 1570
|||||||||||| || |||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 1550 CTACTTGTGGGGAAATAAGAGTGAATGGTACAATGAGACTAGTCTCTTGAACAATGGGAA 1609
Query 1571 ACCAGTTGAGTTTGATGGATACATGAGAGTAGCTGTTGATACAGAGGTGTTTTATAGAGG 1630
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 ACCAGTTGAGTTTGATGGGTACATGAGAGTAGCTGTTGATACAGAGGTGTTTTATAGAGG 1669
Query 1631 AAAGACTCGTGTTGAAACGTTCTATAACCTTACCACGGACTGCAAAGACGGGATCAATAC 1690
||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 AAAGACTCGCGTCGAGACGTTCTATAACCTTACCACGGACTGCAAAGACGGGATCAATAC 1729
Query 1691 ATGCTGAAATTGATCAGTCAGGTTGTTGTTATATGTTTTCATTGTTTAATTTGTTTTTGT 1750
||||| |||||||||| ||||||||| | ||||||||||||||||| |||||||| |||
Sbjct 1730 ATGCT-AAATTGATCATTCAGGTTGT-G--ATATGTTTTCATTGTTTTATTTGTTTGTGT 1785
Query 1751 ATCCTATTCAATTATGCTTGTGTTGTT-ACCTTGTGTTCTACTAGCAATTGAAGAGTGTA 1809
||| ||||| |||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1786 ATCAAATTCAGTTATGCTTGTGTTGTTTACCTTGTGTTCTACTAGCTATTGAAGAGTGTA 1845
Query 1810 CGTAACGTTTACATTTTTTGATTCATA 1836
|||||||||||||||||||||||||||
Sbjct 1846 CGTAACGTTTACATTTTTTGATTCATA 1872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90862986450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5