BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489783
Length=1422
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09080.1 | Symbols: TOC75-IV, ATTOC75-IV | Outer membrane OM... 1893 0.0
AT1G35860.1 | Symbols: TOC75-I | translocon outer membrane comp... 207 2e-52
> AT4G09080.1 | Symbols: TOC75-IV, ATTOC75-IV | Outer membrane
OMP85 family protein | chr4:5803811-5806355 FORWARD LENGTH=1584
Length=1584
Score = 1893 bits (1025), Expect = 0.0
Identities = 1312/1446 (91%), Gaps = 37/1446 (3%)
Strand=Plus/Plus
Query 1 ATagagagagaaagaagtttaagagctacaagtttgaagaaatcgagtagagagagag-- 58
||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 5 ATATAGAGAGAAAGAAGTGTGAGAGCTACAAGTTTGAAGAAATCGAGTAGAGAGAGAGAC 64
Query 59 agaTCTAGA----TC--CTTC-T--TCTTCTTCGTCAACCTCTAGGATACTCGTGTAGGT 109
||||||||| || |||| | |||||||||||||||||||| | ||||||||||||
Sbjct 65 AGATCTAGATTCTTCTTCTTCTTCGTCTTCTTCGTCAACCTCTAGAAGACTCGTGTAGGT 124
Query 110 TATTGTGATGGAAGCTGTGAACGAAGCCGTGAGGAAGATTAAGTCCTTAGTCATTCCACA 169
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 125 TATTGTGATGGAAGCTGTGAAGGAAGCTGTGAGGAAGATTAAGTCCTTAGTCATACCACA 184
Query 170 TTCAGATGAGAAA-ACTAATGGTATTGTTCTTGAGATCAAGCTTGATGAGACAGATCAGA 228
| ||||||||||| | ||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 185 TGCAGATGAGAAAGA-TAATGGTATTGTTTTTGAGATCAAGCTTAATGAGACAGATCAGA 243
Query 229 GA-TCAGCAAAA-TGGAGTCTTGATCCTTCTTTGGCCTTGTTT-GAGGTAACTGGG-TCT 284
|| | || |||| ||| |||||||||||||||||| || ||| |||||||| ||| |
Sbjct 244 GAGT-AG-AAAAGTGGGGTCTTGATCCTTCTTTGG-ATTTTTTCGAGGTAACAGGGAAC- 299
Query 285 TGTACCTTGGGACG-CCAAAACT-TCGAGGGCCT-TAAT-TGCTCTCTCATGAGTGCTGT 340
|||| |||||||| || ||| | |||||| | |||| | ||||||||| || ||||
Sbjct 300 TGTAATTTGGGACGTCC-AAA-TAGCGAGGG-ATCTAATCAG-TCTCTCATGGGTTCTGT 355
Query 341 GACCACTAGCAACATCTTCGATCCTAAGCTGGATGATCTTTTGTCTAAGCTTGAGTATGT 400
||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 356 GACCATTAGGAACATCTTTAATCCTAAGCTGGATGATCTTTTGTCTAAGATTGAGTATGT 415
Query 401 ACGGTGTCTAGACGGTGATAAAAATCCTAGAAACCGTACCTTCAAAACGAGCTTCTTCAA 460
||||| ||| || | || |||||| |||||||||||||||||||||||||||||||||||
Sbjct 416 ACGGTTTCTGGAAGCTGTTAAAAAACCTAGAAACCGTACCTTCAAAACGAGCTTCTTCAA 475
Query 461 CAGCAGAAAACTTAGCCCTGTGTTCACTGGGGGACCAGGCTTTGAGGAAGTAGTGCCTCC 520
||||||||||||||||| ||||||||||| |||||||||| |||||| ||||||||||
Sbjct 476 TAGCAGAAAACTTAGCCCAGTGTTCACTGGAGGACCAGGCTATGAGGATCTAGTGCCTCC 535
Query 521 AATGTTTCTGGCTCGAGATTGTCTTAAAGCTACTATAACTGAGAACTTAACCCGTCAGAG 580
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AATGTTTGTGGGTCGAGATTGTCTTAAAGCTACTATAACTGAGAACTTAACCCGTCAGAG 595
Query 581 AGAATTCACATATGGAGTTATGTTGGAAGAGATAATAGCCCAAGATGAAAACAGG-AAAG 639
|||| ||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||
Sbjct 596 AGAACTCACATATGGAGTTATGTTTGAAGAGATAATAACCCGAGATGAAAACAGGCGAA- 654
Query 640 TCTCTGTAAATGGGCTGTCGTTTTCGCCTAG-CGGTGGAATCAGTGTTAATGGACCTCCA 698
|||||| ||||||||| | ||| |||||| | ||||||||||||| ||||||||||||||
Sbjct 655 TCTCTGAAAATGGGCTCTTGTTATCGCCT-GACGGTGGAATCAGTATTAATGGACCTCCA 713
Query 699 ACAACTCTAAGTGGTACTGGTATTGACCGCATAGCCTCTCTACAAGCCAACATAACCCGA 758
||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||||||||
Sbjct 714 ACAACTCTAAGTGGTACCGGTATTGACCACATTGCCACTCTACAAGCCAACATAACCCGA 773
Query 759 GACAACACCAAGCTTGTGAATGGGGCTATTGTTGGAGAGAGGAATGTCTTTCAGGTGGAT 818
|||||||||||||| |||||||||||| |||||||||||| |||| ||||||||||||||
Sbjct 774 GACAACACCAAGCTAGTGAATGGGGCTGTTGTTGGAGAGAAGAATATCTTTCAGGTGGAT 833
Query 819 CAAGGCTTGGGTATAGGAAGCAATTTCCCGCTCTTCAACCGCCATCAACTAACACTT-AC 877
|||||||| |||||||||| ||||| ||||||||||||||||| |||||| || || ||
Sbjct 834 CAAGGCTTAGGTATAGGAAATAATTTTCCGCTCTTCAACCGCCACCAACTATCA-TTAAC 892
Query 878 AAGATTCATTCAGCTGAAGCAAGTAGAAGAAGGATCCGGTAATCCACGACCACCAGTTCT 937
||| |||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||
Sbjct 893 AAGTTTCATTCAGCTGAAGCAAGTAGAAGAAGGATCCGATAAACCACAACCACCAGTTCT 952
Query 938 AGTCCTCCACGGTCATTACGGTGGCTGCATAGGCGATCTTCCAAACTATGATGCTTTTGC 997
||||||||| |||| ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 953 AGTCCTCCATGGTCGTTACGGTGGCTGCATAGGCGATCTTCCAAGCTATGATGTTTTTGC 1012
Query 998 TCTTGGTGGACCTAACTCTGTTCGAGGCTACAGCATCGGAGAGCTCGGTGCAGCTAAACA 1057
|||||||||||||||||| |||||||| |||||||| ||||| || |||||||||||| |
Sbjct 1013 TCTTGGTGGACCTAACTCCGTTCGAGGATACAGCATGGGAGAACTTGGTGCAGCTAAAAA 1072
Query 1058 CATTCTCGAGCTTAGTGCTGAGATTAGAATCCCTGTGAAGAACACACATGTTTATACATT 1117
||||||||||||| |||||||||||||||| ||||| |||||||||||||| ||| ||||
Sbjct 1073 CATTCTCGAGCTTGGTGCTGAGATTAGAATTCCTGTCAAGAACACACATGTGTATGCATT 1132
Query 1118 TGCTGAGCATGGAAACGATTTGGGAAGTTCAAAGGATGTGAAAGGGAATCCGACAGCGG- 1176
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1133 TGCTGAGCATGGAAACGATTTGGGAAGTTCAAAGGATGTGAAAGGGAATCCAACAG-GGC 1191
Query 1177 TTTACCGGAAAATGGGACATGGTTCATCGTACGGTTTGGGTGTGAAACTCGGTAAGGTGC 1236
||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1192 TTTACAGGAAAATGGGACATGGTTCATCGTATGGTTTGGGTGTGAAACTCGGTATGGTGC 1251
Query 1237 GAGCTGAATATACTGTACGTCACAATCGTGGAACCGGTGCTCTGTTTCTCAGGCTCGGAG 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1252 GAGCTGAATATACTGTACGTCACAATCGTGGAACCGGTGCTCTGTTTCTCAGGTTCGGGG 1311
Query 1297 AGAGATACTAAAGTGATGCCCTGAAGACTTTGTGCTCCTTCCTTTCTTAACTCTAATACT 1356
||||||||||| || ||||| ||||||||||||||| ||| |||||||||||||||||||
Sbjct 1312 AGAGATACTAAGGTCATGCCATGAAGACTTTGTGCTGCTTTCTTTCTTAACTCTAATACT 1371
Query 1357 TTGGTTTATAATCCTGATACTCTAGTTATGTAAATGCGTGCATAGCAAGTCATTGAGTTT 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 TTGGTTTATAATCCTGATACTCTAGTTATGTAAATGCGTGCATAGCAAGTCATTGAGTTT 1431
Query 1417 AAGCAT 1422
| ||||
Sbjct 1432 AGGCAT 1437
> AT1G35860.1 | Symbols: TOC75-I | translocon outer membrane complex
75-I | chr1:13332047-13334050 REVERSE LENGTH=1200
Length=1200
Score = 207 bits (112), Expect = 2e-52
Identities = 226/278 (81%), Gaps = 19/278 (7%)
Strand=Plus/Plus
Query 963 TGCATAGGCGATCTTCCAAACTATGATGCTTTTGCTCTTGGTGGACCTAACTCTGTTCGA 1022
||| |||| ||||| ||| ||||||||||||| ||||||| || ||||||| |||||
Sbjct 928 TGCTTAGGTGATCTACCAGGCTATGATGCTTTTTCTCTTGGAGGTCCTAACTATGTTC-- 985
Query 1023 GGCTACAGC-ATCGGAGAGCTCGGTGCAGCTA-AACACATTCTCGAGC------TTAGTG 1074
|||||| | | |||||||| |||||||||| || ||||| |||||| || |||
Sbjct 986 -GCTACA-CTAAGGGAGAGCTTGGTGCAGCTAGAA-ACATTGTCGAGCTAAAGGTTGGTG 1042
Query 1075 CTGAGATTAGAATCCCTGTGAAGAACACACATGTTTATACATTTGCTGAGCATGGAAACG 1134
||||| ||||| | ||||||||| ||||| | ||| |||||||||||||||||||||
Sbjct 1043 CTGAGCTTAGAGTAAATGTGAAGAATACACAAGGGTATGCATTTGCTGAGCATGGAAACG 1102
Query 1135 ATTTGGGAAGTTCAAAGGATGTGAAAGGGAATCCGACAGCGG-TTTACCGGAA-A-ATGG 1191
|||||||||| ||||||||| |||||||||||||||| |||| ||| | | || | | ||
Sbjct 1103 ATTTGGGAAGCTCAAAGGATATGAAAGGGAATCCGACCGCGGCTTT-CAG-AAGAGA-GG 1159
Query 1192 GACATGGTTCATCGTACGGTTTGGGTGTGAAACTCGGT 1229
||||||||||||| || ||| ||||| ||||||| |||
Sbjct 1160 GACATGGTTCATCTTATGGTGTGGGTATGAAACTTGGT 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70079960820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5