BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489785
Length=725
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09110.1 | Symbols: | RING/U-box superfamily protein | chr4... 946 0.0
AT4G09120.1 | Symbols: | RING/U-box superfamily protein | chr4... 529 2e-149
AT4G09130.1 | Symbols: | RING/U-box superfamily protein | chr4... 351 4e-96
> AT4G09110.1 | Symbols: | RING/U-box superfamily protein | chr4:5812488-5813396
FORWARD LENGTH=909
Length=909
Score = 946 bits (512), Expect = 0.0
Identities = 660/730 (90%), Gaps = 16/730 (2%)
Strand=Plus/Plus
Query 1 ATGGCTATCTTCGCGAGAGATCTCATCTATGGGATCGAAGC-AAGGGTTTTGTTGCCGCT 59
||| |||| ||||||||||||||||||||| |||||||| | || |||||||||||||||
Sbjct 1 ATGACTATATTCGCGAGAGATCTCATCTATAGGATCGAAACGAA-GGTTTTGTTGCCGCT 59
Query 60 CTTCCTTGTCCATTTTTTGCCTTACGTAACATGCCAACAAGAGTCAAAATCCGCAGACCG 119
||||||||||||||| || ||||| ||||||||||| ||||||||| |||||| ||||||
Sbjct 60 CTTCCTTGTCCATTTGTTACCTTATGTAACATGCCAGCAAGAGTCAGAATCCGTAGACCG 119
Query 120 CAACAGAAATACCAATTTTCCGACGGAATCGGTAATTGCAATCATTGCGCTTGCAATGTT 179
||| ||||| |||||||| || |||||| ||||||| |||||||||| ||||||||| ||
Sbjct 120 CAATAGAAAAACCAATTTCCCAACGGAAACGGTAATCGCAATCATTGTGCTTGCAATATT 179
Query 180 TATCTCAATAACCACGCTCGCTTGTTTCTTGCACAACACATTCTATAGAGCAGAGCTTGA 239
||||||| ||| || | ||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 180 TATCTCATTAAGCATGGTCGCTTGTTTCTTGCACAAAACATTCTATAGAGCAGAGGTTGA 239
Query 240 GGCCGCAAGCCAAGAAGTGTTTCACAGTAGAGCGAGGAGTGGGCTCGAGAAGGAACTCAT 299
||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 240 GGCGGCAAGCCAAGAAGTGTTTCACAGTAGAGCGAGGCGTGGGCTCGAGAAGGAACTCGT 299
Query 300 CGAGTCCTTTCC-ATTATTCCTCTATTCAGAGGTTAAAGGGTTCAAGATAGGCAAAGGCG 358
||||||||||| ||| ||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 300 TGAGTCCTTTCCAATT-TTCCTCTATTCGGAGGTTAAAGGGCTCAAGATAGGCAAAGGCG 358
Query 359 GAGTCGAATGTGCAATTTGTCTTAGTGAGTTTGAGGATCAAGAAACGCTACGTTGGATGC 418
|||| ||||||||||||||||| || ||||||| |||| ||||||| |||||||||||||
Sbjct 359 GAGTAGAATGTGCAATTTGTCTAAGCGAGTTTGTGGATAAAGAAACACTACGTTGGATGC 418
Query 419 CTCCTTGTAGCCACACTTTCCATGCTAATTGCATCGATGTGTGGCTCTCTTCTCGGTCCA 478
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 419 CTCCTTGTAGCCACACTTTCCATGCTAATTGCATTGATGTGTGGCTCTCTTCTCAGTCCA 478
Query 479 CATGTCCGGTCT-GTCGTGCAAATCTGTCTCTCAAACCTTGTGAAAGCTT-TCCATATCC 536
||||||||| || ||||||||||||||||||||||||| |||| || || |||||||||
Sbjct 479 CATGTCCGG-CTTGTCGTGCAAATCTGTCTCTCAAACCCGGTGAGAG-TTATCCATATCC 536
Query 537 GATCATGGATCTTGAAACAGGAAATGCACGAAGAGATGTACTAGAACGTTCATTGCTTCA 596
||||| |||||||||||| ||||||| || || ||| | | | |||| ||||||||||||
Sbjct 537 GATCACGGATCTTGAAACGGGAAATGAAC-AA-AGA-G-A-T-GAACATTCATTGCTTCA 590
Query 597 ACTAGGTAAGAATCTAGATCGGTTCACACTACAGTTACCAAAGGAGATGCAAAGA-AGAT 655
|||||||| |||||||||||| |||||||| ||||||||| |||||||||||||| | ||
Sbjct 591 ACTAGGTACGAATCTAGATCGATTCACACTTCAGTTACCAGAGGAGATGCAAAGACA-AT 649
Query 656 TGGTTAGCTTGAATCTGATAAGGATGAGAAACACGGCCTTACCTCGAGCCATGAGTTCGA 715
|||||||||||||||||||||||| || |||| | ||||||||||||||||||||||||
Sbjct 650 TGGTTAGCTTGAATCTGATAAGGACAAGCAACATGACCTTACCTCGAGCCATGAGTTCGA 709
Query 716 GACAGGGCTA 725
||||||||||
Sbjct 710 GACAGGGCTA 719
> AT4G09120.1 | Symbols: | RING/U-box superfamily protein | chr4:5813998-5815035
FORWARD LENGTH=1038
Length=1038
Score = 529 bits (286), Expect = 2e-149
Identities = 472/561 (84%), Gaps = 16/561 (3%)
Strand=Plus/Plus
Query 6 TATCTTCGCGAGAGATC-TCAT-CTATGGGATCGAAGCAAGG-GTTTTGTTGCCGCTCTT 62
||||||| ||||| ||| | | || ||| ||| | | ||| ||| | |||||||||||
Sbjct 6 TATCTTCACGAGATATCACCTTCCT-CGGG-TCGTATC-AGGTGTTATATTGCCGCTCTT 62
Query 63 CCTTGTCCATTTTTTGCCTTACGTAACATGCCAACAAGAGTCAAAATCC-GCAGACCGCA 121
|||| ||||| ||||||||||||| ||||| || |||||||| | || || || |||
Sbjct 63 CCTTTTCCATCTTTTGCCTTACGTTACATGTCAGCAAGAGTCGGTA-CCAACAAACAGCA 121
Query 122 ACAGA-AATACCAAT-TTTCCGACGGAATCGGTAATTGCAATCATTGCGCTTGCAATGTT 179
||| || |||||| | || | | || || ||||||||||| ||| ||||||||| ||
Sbjct 122 TTAGACAA-ACCAATCTCTCAG-CTGACTCAATAATTGCAATCGTTGTGCTTGCAATATT 179
Query 180 TATCTCAATAACCACGCTCGCTTGTTTCTTGCACAACACATTCTATAGAGCAGAGCTTGA 239
||| ||| || || | || |||||| ||||||| || ||||||||| | |||| |||
Sbjct 180 TATATCATTAGGCATGGTCTCTTGTTGCTTGCACTGCATATTCTATAGGGAAGAGATTGG 239
Query 240 GGCCGCAAGCCAAGAAGTGTTTCACAGTAGAGCGAGGAGTGGGCTCGAGAAGGAACTCAT 299
||| ||| | ||||| || || ||||||||||| ||| ||||||||||||||||| ||||
Sbjct 240 GGCGGCAGGTCAAGATGTATTACACAGTAGAGCAAGGCGTGGGCTCGAGAAGGAAGTCAT 299
Query 300 CGAGTCCTTTCC-ATTATTCCTCTATTCAGAGGTTAAAGGGTTCAAGATAGGCAAAGGCG 358
|||||| ||||| | | ||||| |||||||| ||||||||| ||||||||||||||||||
Sbjct 300 CGAGTCTTTTCCAACT-TTCCTTTATTCAGAAGTTAAAGGGCTCAAGATAGGCAAAGGCG 358
Query 359 GAGTCGAATGTGCAATTTGTCTTAGTGAGTTTGAGGATCAAGAAACGCTACGTTGGATGC 418
| || ||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 359 GTGTAGAATGTGCAATTTGTCTGAGCGAGTTTGAGGATCAAGAAACGCTACGTTGGATGC 418
Query 419 CTCCTTGTAGCCACACTTTCCATGCTAATTGCATCGATGTGTGGCTCTCTTCTCGGTCCA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 419 CTCCTTGTAGCCACACTTTCCATGCTAATTGCATCGATGTGTGGCTCTCTTCTTGGTCCA 478
Query 479 CATGTCCGGTCTGTCGTGCAAATCTGTCTCTCAAACCTTGTGAAAGCTT-TCCATATCCG 537
|||||||||| |||||||||||||||||||||||||| |||| || || |||||||| |
Sbjct 479 CATGTCCGGTTTGTCGTGCAAATCTGTCTCTCAAACCCGGTGAGAG-TTATCCATATCTG 537
Query 538 ATCATGGATCTTGAAACAGGA 558
| ||||||| ||||||| |||
Sbjct 538 AACATGGATGTTGAAACGGGA 558
> AT4G09130.1 | Symbols: | RING/U-box superfamily protein | chr4:5815849-5816922
FORWARD LENGTH=1074
Length=1074
Score = 351 bits (190), Expect = 4e-96
Identities = 463/592 (78%), Gaps = 29/592 (5%)
Strand=Plus/Plus
Query 1 ATGGCTATCTTCGCGAGAGATCTCATCTATGGGATCGAAGCAAGGGTTTTGTTGCCGCTC 60
||| |||||||| | |||||| ||| | || ||||| |||| | ||||| ||||| |||
Sbjct 1 ATGACTATCTTCACAAGAGATTTCAGCCATCGGATCCTAGCATGTGTTTTATTGCCACTC 60
Query 61 TTCCTTGTCCATTTTTTGCCTTACGTAACATGCCAACAAGAGTCAAAATCCGCAGACCGC 120
|||||| |||| | ||||||||||||||| ||||| |||| ||| |||| |||| |||
Sbjct 61 TTCCTTTTCCAATGTTTGCCTTACGTAACTTGCCAGCAAGGGTCGGAATCAGCAGGTCGC 120
Query 121 AACAGAAATACCAATTTTCCGACGGAATCGGTAATTGCAATCATTGCGCTTGCAATGTTT 180
|| | || | || | || | |||| |||||| ||| || |||| | || ||
Sbjct 121 AA-TGGAA-A--AA-GTAAAGA-GTCATCGATAATTGGGATCGTTTTGCTTTCGTTG-TT 173
Query 181 ATCTCAATAAC-CACGCTCGCTTGTTTCTTGCAC-A-ACACATTCTATAGAGCAGAGCTT 237
||| | || | ||| || || ||| || | | || ||| || |||| |
Sbjct 174 -CCTC--TTACTTTTGGTCGTTTATTGCTTAAACTATGGATGTTGTATTGA--AGAGAAT 228
Query 238 GAGGCCGCAAGCCAAGAAGTGTTTCACAGTAGAGCGAGGAGTGGGCTCGAGAAGGAAC-T 296
||| | | | | || |||||||| |||||||||| |||| ||||| | || |||| || |
Sbjct 229 GAGACAGGAGGTCATGAAGTGTTACACAGTAGAGTGAGGCGTGGGATTGACAAGG-ACGT 287
Query 297 CATCGAGTCCTTTCC-ATTATTCCTCTATTCAGAGGTTAAAGGGTTCAAGATAGGCAAAG 355
||||||||||||||| | ||||| |||||||||||||||| ||||||||||||||| |
Sbjct 288 CATCGAGTCCTTTCCGGCT-TTCCTATATTCAGAGGTTAAAGCGTTCAAGATAGGCAACG 346
Query 356 GCGGAGTCGAATGTGCAATTTGTCTTA-GTGAGTTTGAGGATC-AAGAAACGCTACGTTG 413
||||||| |||||||||||||||| || | |||||||| || | |||| ||||||||||
Sbjct 347 GCGGAGTTGAATGTGCAATTTGTC-TATGCGAGTTTGAAGA-CGAAGAGCCGCTACGTTG 404
Query 414 GATGCCTCCTTGTAGCCACACTTTCCATGCTAATTGCATCGATGTGTGGCTCTCTTCTCG 473
|||||||||||||||||| |||||||||||||||||||| || | ||||||||||||||
Sbjct 405 GATGCCTCCTTGTAGCCATACTTTCCATGCTAATTGCATTGACGAATGGCTCTCTTCTCG 464
Query 474 GTCCACATGTCCGGTCTGTCGTGCAAATCTGTCTCTCAAA-CCTTGTGAAAGCTTTCCAT 532
|||||||||||| ||||| ||||||||| ||||||| || || |||| |||||||||
Sbjct 465 GTCCACATGTCCCGTCTGCCGTGCAAATTTGTCTCTGAAGTCCG-GTGACAGCTTTCCAC 523
Query 533 ATCCGA-TCATGGATCTTGAAACAGGAAATGCAC-GAAGAGATGTACTAGAA 582
|||||| | |||||| ||||||| |||||||||| || ||| ||| | ||||
Sbjct 524 ATCCGAGT-ATGGATGTTGAAACGGGAAATGCACAGA-GAGGTGTTCAAGAA 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35163902900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5