BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg489788
Length=2326
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09160.1 | Symbols: | SEC14 cytosolic factor family protein... 3147 0.0
AT1G72160.1 | Symbols: | Sec14p-like phosphatidylinositol tran... 459 7e-128
> AT4G09160.1 | Symbols: | SEC14 cytosolic factor family protein
/ phosphoglyceride transfer family protein | chr4:5839683-5842394
FORWARD LENGTH=2321
Length=2321
Score = 3147 bits (1704), Expect = 0.0
Identities = 2126/2319 (92%), Gaps = 71/2319 (3%)
Strand=Plus/Plus
Query 47 tctctctctccctttcttctgcttttttcAAGAA-AATaaaaaaaTGCT-TCAAGATTCT 104
||||||| |||||||||||| ||||||||||||| |||||||||||| | ||||||||||
Sbjct 35 TCTCTCTGTCCCTTTCTTCTTCTTTTTTCAAGAACAATAAAAAAATG-TCTCAAGATTCT 93
Query 105 GCAACTACTACTACTACTCCGCCGCCACCTTTAACCTCCGACGTTTCAATGCCTTCCGGT 164
| | | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 94 G---C-A--ACTACTACTCCGCCGCCACCTTTAACCTCCGACGTTTCAATGCCTTCCGGT 147
Query 165 GAAGAACAAGAGCCAAAGCATGTTACTTTGGAAGAAGAGGCACCGGTGACTTCGGAGCCA 224
|||||| | |||||||||||||| || | |||||||||||||||||||||||||||| ||
Sbjct 148 GAAGAAGATGAGCCAAAGCATGTAACATCGGAAGAAGAGGCACCGGTGACTTCGGAGACA 207
Query 225 AATCTGCAA-CTACCTTTAATGCCGGAGCTAGAGGAGTCAAATCATGCGGCGGAGGTTGA 283
|||||| || |||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 208 AATCTG-AAGCTACCTTTGATGCCGGAGCTAGAGGAGTCAAATCATACGGCGGAGGTTGT 266
Query 284 TTCAGAGAAGTCACATCAAGTGACGCCGGATACGGTGACTTCGGTGTCAGAGGGTCTTAA 343
|||||||||| ||||||||||| ||| |||||| || |||||| ||||| ||
Sbjct 267 TTCAGAGAAG---------GTGACGCCGGAGACGATGACTTTGGAGTCAGAAGGTCTCAA 317
Query 344 CCACGCGGCGGAGGATTCAGAGCTGACACATGAAGTGACGCCGGAGACAGAGACTTCGAA 403
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 318 CCACGCGGCGGAGGATTCAGAGCAGACACATGAAGTGACGCCGGAGACAGAGACTGCGAA 377
Query 404 GCCAGAGGTTCTCAACCATGCGGCGGAGGATTCAGAGAAGCCACATCAAATGACGCCGGA 463
|| ||||||||||||||| ||||||||||||||||| || ||||| || ||||||||||
Sbjct 378 GCTAGAGGTTCTCAACCACACGGCGGAGGATTCAGAGCAGACACATGAAGTGACGCCGGA 437
Query 464 GACAGAGACTTTGAAGCCAGAGGTTCCCAACCATGCAGCGGAGGATTCAGAGCAGATACA 523
|| ||||||| |||| ||||| ||| |||||| | ||||||||||||||||||| |||
Sbjct 438 GAAAGAGACTGTGAAATCAGAGTTTCTCAACCACGTGGCGGAGGATTCAGAGCAGACACA 497
Query 524 ACAAATAACGCCGGAGACAGAGACTTTGAAGCCAGAGGTTCTTAACCACGCGGCGGCGGA 583
|| | |||||||||||||||||| ||||| |||||||||| ||||| ||||||| |||
Sbjct 498 TGAAGTGACGCCGGAGACAGAGACTGTGAAGTCAGAGGTTCTCAACCATGCGGCGGAGGA 557
Query 584 TTCAGTGCAGCCACATGGAGTGACGCCGACGCCGGAGAAAGAAACTTCGGAGACAGACAC 643
||||| |||||||| ||||||||| ||||||||||||| |||||| |||||| |||||||
Sbjct 558 TTCAGAGCAGCCACGTGGAGTGACACCGACGCCGGAGACAGAAACATCGGAGGCAGACAC 617
Query 644 GTCATTGCTTGTAATTTCGGAGCCAGAAGAGCCTAACCACT-TGGCGGAGGATGATTCAG 702
|||||||||||||| ||| ||| |||||||||||||||| | |||||||||| ||||
Sbjct 618 GTCATTGCTTGTAACTTCCGAGACAGAAGAGCCTAACCA-TGCGGCGGAGGATTATTC-- 674
Query 703 AGACGCCGGAGACAGAGCCATCTCAGAAACTGATGTTAGAGCACCGGAGAAAGTACATGG 762
| |||||||||||||| |||||||| ||||| ||||| |||||||||||||||
Sbjct 675 --A-----GAGACAGAGCCATCACAGAAACTAATGTTGGAGCAGAGGAGAAAGTACATGG 727
Query 763 AAGTAGAAGATTGGACAGAGCCAGAACTACCAGACGCGGCGGTGTTAGAAGCTGCAGCGT 822
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 728 AAGTAGAAGATTGGACAGAGCCAGAACTACCAGATGAAGCGGTGTTAGAAGCTGCAGCGT 787
Query 823 CAGT--CT-------------CTGAGCCTCAGGCACCACCA-C-CTACTA-CTACTGC-A 863
|||| || | ||||||||| |||||||| | | || | ||||| | |
Sbjct 788 CAGTCCCTGAGCCAAAGCAACCAGAGCCTCAGACACCACCACCACCACCATCTACTACTA 847
Query 864 C--CCACCGTTGAATCTAGATCTTTAGCGGAAATGATGAACAGAGAAGAAGCAGAAGCAG 921
| |||| |||| ||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 848 CTTCCACTGTTGCATCTAGATCTTTAGCCGAAATGATGAACAGAGAAGAAGCAGAAGTAG 907
Query 922 AAGAGAAACAAAAGATTCAGATTCCTCGTAGTCTCGGTTCATTCAAAGAAGAAACAAACA 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 AAGAGAAACAAAAGATTCAGATTCCTCGTAGTCTCGGTTCATTCAAAGAAGAAACAAACA 967
Query 982 AAATCTCCGATCTTTCAGAACCAGAGTTAAACGCACTTCACGAGCTTCGTCACCTTCTTC 1041
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 968 AAATCTCCGATCTTTCAGAAACAGAGTTAAACGCACTTCAAGAGCTTCGTCACCTTCTTC 1027
Query 1042 AAGTATCACAAGATTCAAGCAAAAGCT-TCATATGGGGTGTGCCACTTCTCAAAGACGAC 1100
|||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||
Sbjct 1028 AAGTATCACAAGATTCAAGCAAAACCTCT-ATATGGGGTGTGCCACTTCTCAAAGACGAC 1086
Query 1101 AGAACCGACGTCGTTTTGTTAAAGTTCCTAAGAGCAAGAGACTTTAAACCTCAAGAAGCT 1160
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1087 AGAACCGACGTCGTTTTGTTAAAGTTTCTAAGAGCAAGAGACTTTAAACCTCAAGAAGCT 1146
Query 1161 TACTCAATGCTCAACAAGACACTCCAATGGAGAATCGACTTCAACATCGAAGAGCTTCTC 1220
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1147 TACTCAATGCTAAACAAGACACTCCAATGGAGAATCGACTTCAACATCGAAGAGCTTCTA 1206
Query 1221 GATGAAAACCTCGGTGACGATTTAGACAAGGTTGTGTTCATGCAAGGACACGACAAAGAC 1280
|| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 1207 GACGAAAACCTCGGTGACGATTTAGACAAAGTTGTGTTCATGCAAGGACAAGACAAGGAG 1266
Query 1281 AATCATCCTGTCTGTTACAATGTCTATGGTGAGTTTCAGAACAAAGATCTTTATCAGAAA 1340
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1267 AATCATCCTGTCTGTTACAATGTCTACGGTGAGTTTCAGAACAAAGATCTTTATCAGAAA 1326
Query 1341 ACGTTTTCTGATGAAGAGAAGAGAGAACGGTTCTTGAGATGGAGGATTCAGTTTCTTGAA 1400
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 ACGTTTTCAGATGAAGAGAAGAGAGAACGGTTCTTGAGATGGAGGATTCAGTTTCTTGAA 1386
Query 1401 AAGAGTATAAGGAATCTTGATTTTGTAGCTGGTGGTGTTTCCACGATATGTCAAGTAAAT 1460
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 AAGAGTATCAGGAATCTTGATTTTGTAGCTGGTGGTGTTTCCACGATATGTCAAGTAAAT 1446
Query 1461 GATCTTAAGAATTCTCCAGGACCTGGTAAGACTGAGCTTAGGTTAGCTACTAAGCAAGCT 1520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 GATCTTAAGAATTCTCCAGGACCTGGTAAGACTGAGCTTAGGTTAGCTACTAAGCAAGCT 1506
Query 1521 CTTCATCTTCTTCAAGACAATTATCCTGAGTTTGTCTCTAAACAGATATTCATCAATGTT 1580
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1507 CTTCATCTTCTTCAAGACAATTACCCTGAGTTTGTCTCTAAACAGATATTCATCAATGTT 1566
Query 1581 CCATGGTGGTACCTTGCGTTCTATAGGATTATTAGTCCTTTTATGTCACAAAGATCAAAG 1640
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1567 CCATGGTGGTACCTTGCGTTCTATAGAATTATTAGTCCTTTTATGTCACAAAGGTCAAAG 1626
Query 1641 AGCAAACTAGTTTTCGCAGGTCCTTCAAGATCTGCAGAAACCCTTTTCAAGTACATATCG 1700
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1627 AGCAAACTAGTTTTCGCAGGTCCTTCAAGATCTGCAGAAACCCTTCTCAAGTACATATCA 1686
Query 1701 CCAGAACATGTTCCGGTTCAGTATGGTGGACTAAGTGTGGATAACTGCGACTGCAACTCC 1760
|| |||||||| |||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 1687 CCCGAACATGTCCCGGTTCAGTATGGTGGACTAAGTGTGGATAATTGCGAGTGTAACTCG 1746
Query 1761 GATTTCACACACGATGATATCGCTACCGAGATTACTATTAAACCAACTACTAAACAAACC 1820
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1747 GATTTCACACACGATGATATCGCTACCGAGATTACTGTTAAACCAACTACTAAACAAACC 1806
Query 1821 GTCGAGATTATTGTTTACGAGAAATGCACGATCGTGTGGGAGATAAGAGTAGTGGGATGG 1880
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1807 GTCGAGATTATTGTTTACGAGAAATGTACAATCGTGTGGGAGATAAGAGTAGTGGGATGG 1866
Query 1881 GAGGTTTCATATGGAGCAGAGTTTGTGCCGGAGAATAAAGAAGGGTATACGGTGATCATT 1940
|||||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1867 GAGGTTTCGTATGGAGCGGAGTTTGTGCCGGAGAACAAAGAAGGGTATACAGTGATCATT 1926
Query 1941 CAGAAACCGAGGAAGATGACTGCGAAAAATGAACCGGTAGTGTCTCAGAGCTTCAAAGTT 2000
|||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||
Sbjct 1927 CAGAAACCGAGGAAGATGACTGCGAAAAATGAACTGGTGGTGTCTCATAGCTTCAAAGTT 1986
Query 2001 GGAGAAGTTGGCAGGATTTTGCTAACCGTGGATAACCCGAATTCAACCAAGAAAATGCTT 2060
|||||||||||||||||||||||||| || |||||||||| ||| |||||||||||||||
Sbjct 1987 GGAGAAGTTGGCAGGATTTTGCTAACTGTTGATAACCCGACTTCGACCAAGAAAATGCTT 2046
Query 2061 ATCTACAGGTTCAAGGTTAAGCCTTTA-CTATGTGAGTAACAAAAGTCGCATCTTTC-T- 2117
||||||||||||||||||||||||||| || ||||||||||||||| |||||||||| |
Sbjct 2047 ATCTACAGGTTCAAGGTTAAGCCTTTAGCT-TGTGAGTAACAAAAGCCGCATCTTTCGTC 2105
Query 2118 TGAGTGTTTCTTAGGTTAGAACTTTGATCATATGATTGTTGGTTGTGtttt-ttttt-tC 2175
|||||||||||||| ||||||||| |||||||||||||||| ||||||||| ||||| ||
Sbjct 2106 TGAGTGTTTCTTAGTTTAGAACTT-GATCATATGATTGTTGATTGTGTTTTGTTTTTCTC 2164
Query 2176 T-TTGTCACCTACTTATAtgtttgtttggttctgtttgctaaattcttttgttttatatt 2234
| || | ||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2165 TCTTTT-ACCGACTTATATGTTTGTGTGGTTCTGTTTGCTAAATTCTTTTGTTTTATATT 2223
Query 2235 tgtattttgctctcttatttttt------cattttgCTTCCAAATTTCACCGAGGTATGT 2288
|||||||||||||||||||||| || |||||||||||||||||| |||| ||||
Sbjct 2224 -GTATTTTGCTCTCTTATTTTTTATTTTTCAGTTTGCTTCCAAATTTCACTGAGGAATGT 2282
Query 2289 TTT-GACTTTTGATTGTTGAATGGCTTTTAAAGGAAACC 2326
||| ||||||||| |||||||||||||||||||||||||
Sbjct 2283 TTTTGACTTTTGAGTGTTGAATGGCTTTTAAAGGAAACC 2321
Score = 191 bits (103), Expect = 3e-47
Identities = 155/179 (87%), Gaps = 7/179 (4%)
Strand=Plus/Plus
Query 271 CGGCGGAGGTTGATTCAGAGAAGTCACATCAAGTGACGCCGGATACGGTGACT-TCGGTG 329
||||||| | ||||||||| || ||||| ||||||||||||| | | |||| | |
Sbjct 398 CGGCGGA-G--GATTCAGAGCAGACACATGAAGTGACGCCGGAGAAAGAGACTGT-GAAA 453
Query 330 TCAGAGGGTCTTAACCACGCGGCGGAGGATTCAGAGCTGACACATGAAGTGACGCCGGAG 389
|||||| ||| ||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 454 TCAGAGTTTCTCAACCACGTGGCGGAGGATTCAGAGCAGACACATGAAGTGACGCCGGAG 513
Query 390 ACAGAGACT-TCGAAGCCAGAGGTTCTCAACCATGCGGCGGAGGATTCAGAGAAGCCAC 447
||||||||| | |||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 514 ACAGAGACTGT-GAAGTCAGAGGTTCTCAACCATGCGGCGGAGGATTCAGAGCAGCCAC 571
> AT1G72160.1 | Symbols: | Sec14p-like phosphatidylinositol transfer
family protein | chr1:27153581-27155664 REVERSE LENGTH=1770
Length=1770
Score = 459 bits (248), Expect = 7e-128
Identities = 784/1032 (76%), Gaps = 80/1032 (8%)
Strand=Plus/Plus
Query 1093 AAGACGACAGAACCGACGTCGTTTTGTTAAAGTTCCTAAGAGCAAGAGACTTTAAACCT- 1151
||||||| |||| |||||||||||||||||| ||||||||||| || || || || |
Sbjct 531 AAGACGATAGAAGCGACGTCGTTTTGTTAAAATTCCTAAGAGCTAGGGA-GTTCAAGGTG 589
Query 1152 CAAGA--AGCTTACTCAATGCTCAACAAGACACTCCAA-TGGAGAATCGACTTCAACATC 1208
|||| | || || |||||||| || ||| | ||| ||||||| || ||||| |||
Sbjct 590 AAAGATTCGTTTGCT--ATGCTCAAGAACACAAT-CAAGTGGAGAAAGGAGTTCAAGATC 646
Query 1209 GAAGAGCTT-CTCGATGAAAACCTCGGT-GACGAT-TTAGACAAGGTTGTGTTCATGCAA 1265
|| || || |||| ||| | || || || ||| || |||||||||||||| |||||
Sbjct 647 GATGA-ATTGGTCGAGGAAGATCT-TGTGGATGATCTT-GACAAGGTTGTGTTTATGCAT 703
Query 1266 GGACACGACAAAGACA-ATCATCCTGTCTGTTACAATGTCTATGGTGAGTTTCAGAACAA 1324
||||| ||| ||| | ||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 704 GGACATGACCGAGA-AGGTCACCCTGTTTGTTACAATGTCTATGGTGAGTTTCAGAACAA 762
Query 1325 AGATCTTTATCAGAAAACGTTTTCTGATGAAGAGAAGAGAGAA-CGGTTCTTGAG-A-TG 1381
|| |||||| | || |||||||||||||| || ||||| ||| | |||||||| | |
Sbjct 763 GGAGCTTTATAATAAGACGTTTTCTGATGAGGAAAAGAG-GAAACATTTCTTGAGGACT- 820
Query 1382 GAGGATTCAGTTTCTTGAAAAG-AGTATAAGGAATCTTGATTTTGTAGCT--GGTGGTGT 1438
||||||||||| |||| | || ||||||||||| || |||||| |||| ||||| ||
Sbjct 821 -AGGATTCAGTT-CTTGGAGAGGAGTATAAGGAAGCTAGATTTT--AGCTCTGGTGGGGT 876
Query 1439 TTCCACGATATGTCAAGTAAATGATCTTAAGAATTCTCCAGGACCT-GGTAAGACTGAGC 1497
||| || || | ||| || |||||| | ||||||||||| || | || |||| ||||
Sbjct 877 TTCTACTATTTTTCAGGTTAATGATATGAAGAATTCTCCGGGGT-TAGGGAAGAAAGAGC 935
Query 1498 TTAGGTTAGCTACTAAGCAAGCTCTTCATCTT-CTTCAAGACAATTATCCTGAGTTTGTC 1556
|||| | |||||||||||||||| || | || ||||| |||||||| ||||||||||||
Sbjct 936 TTAGATCAGCTACTAAGCAAGCTGTTGAG-TTGCTTCAGGACAATTACCCTGAGTTTGTC 994
Query 1557 T-CTAAACAGA-TATTCATCAATGTTCCATGGTGGTACCTTGCGTTCTATAG-GATTATT 1613
| | |||||| | || ||||||||||| ||||||||||||| ||| |||| | | |||
Sbjct 995 TTC-AAACAGGCTTTT-ATCAATGTTCCTTGGTGGTACCTTGTGTTTTATACTG-TGATT 1051
Query 1614 AGTCCTTTTATGTCACAAAGATCAAAGAGCAAACTAGT-TTTCGCAGGTCCTTCAAGATC 1672
|||| || ||| ||| ||||||||||||||| || || ||| || |||||||| | ||
Sbjct 1052 GGTCCGTTCATGACACCAAGATCAAAGAGCAAGCTTGTGTTT-GCTGGTCCTTCGCGTTC 1110
Query 1673 TGCAGAAACCCTTTTCAAGTACATATCGCCAGAACATGTTCCGGTTCAGTATGGTGGACT 1732
|| |||||||| ||||| |||||||| || || || ||||| || || ||||||||| |
Sbjct 1111 AGCTGAAACCCTATTCAAATACATATCACCCGAGCAAGTTCCAGTACAATATGGTGGATT 1170
Query 1733 AAGTGTGGATAACT-GCGACTGCAACTCC-GA-TTTCACACACGATGATATC-GC-TACC 1787
||||| ||| || |||||||||| ||| || ||| | || ||| || || | |
Sbjct 1171 GAGTGTTGATC-CTTGCGACTGCAA-TCCAGACTTTT-CGTTGGAAGAT-TCAGCCT-CT 1225
Query 1788 GAGATTACTATTAAACCAACTACTAAACAAACCGTCGAGATTATTGTTTACGAGAAATGC 1847
||||| ||| |||| || || |||||||| || ||||| || | || ||||||||
Sbjct 1226 GAGATCACTGTTAAGCCCGGAACAAAACAAACTGTTGAGATCATAATCTATGAGAAATGT 1285
Query 1848 -A-CGATCGTGTGGGAGATAAGAGTAG-TGGGATGGGAGGTTT-C-ATATGGAGCAGAGT 1902
| | | |||||||||||||| ||| ||| |||||| || | | | || | || |
Sbjct 1286 GAACT-T-GTGTGGGAGATAAGGGTAACTGG-ATGGGAAGTGAGCTACAAGG--CTGAAT 1340
Query 1903 TTGTGCCGGA-GAATAAAGAAGGGTATACGGTGATCATTCAGAAACCGAGGAAGATGACT 1961
|||||||||| || ||||| | || |||||| | || || ||||||||||||||||
Sbjct 1341 TTGTGCCGGAAGAG-AAAGATGCTTACACGGTGGTTATACAAAAACCGAGGAAGATGAGA 1399
Query 1962 GCGAAAA-ATGAACCGGTAGTGT--CTCAGAGCTTCAAAGTTGGA-GAAG-TTGGCA-GG 2015
| | |||||||||| || | | || ||||||||||| | | || | |||||| ||
Sbjct 1400 CC-ATCCGATGAACCGGT-GT-TAACCCATAGCTTCAAAGT-GAATGA-GCTTGGCAAGG 1454
Query 2016 ATTTTGCTAACCGTGGATAACCCGAAT-TC-AACCAAGAA-AATGCTTATCTACAGGTTC 2072
|||| || || || || ||||| || || || ||||| || ||| | |||||||||
Sbjct 1455 -TTTTACTCACAGTAGACAACCC-AACCTCTAAG-AAGAAGAA-GCTCGTTTACAGGTTC 1510
Query 2073 AAGGTTAAGCCT 2084
|| || || |||
Sbjct 1511 AATGTCAAACCT 1522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115461253500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5